Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47275 * 307.48063 * 3 2 1 5 5 O 1.45206 * 109.47027 * 67.48098 * 3 2 1 6 6 C 1.34232 * 116.99998 * 269.99582 * 5 3 2 7 7 O 1.20825 * 119.99673 * 0.02562 * 6 5 3 8 8 C 1.50695 * 119.99791 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47053 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47312 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47312 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47057 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00760 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00181 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99941 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47329 * 59.99871 * 16 14 12 18 18 H 1.48502 * 109.47227 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47644 * 299.99929 * 16 14 12 20 20 C 1.53002 * 109.47212 * 187.48056 * 3 2 1 21 21 C 1.52998 * 117.50041 * 128.74960 * 20 3 2 22 22 C 1.53002 * 117.49740 * 60.08326 * 20 3 2 23 23 H 4.18739 * 15.04013 * 359.97438 * 4 2 1 24 24 H 1.08994 * 109.47325 * 300.00431 * 8 6 5 25 25 H 1.09007 * 109.47169 * 60.00364 * 8 6 5 26 26 H 1.09002 * 109.46963 * 299.99930 * 9 8 6 27 27 H 1.08999 * 109.47282 * 59.99694 * 9 8 6 28 28 H 1.09002 * 109.46723 * 299.99678 * 10 9 8 29 29 H 1.09007 * 109.47365 * 59.99726 * 10 9 8 30 30 H 1.09002 * 109.46963 * 299.99531 * 11 10 9 31 31 H 1.08999 * 109.47282 * 59.99295 * 11 10 9 32 32 H 0.96997 * 119.99957 * 180.02562 * 15 14 12 33 33 H 1.09002 * 115.54829 * 274.42362 * 20 3 2 34 34 H 1.09001 * 117.49742 * 359.97438 * 21 20 3 35 35 H 1.08994 * 117.49777 * 145.02659 * 21 20 3 36 36 H 1.08997 * 117.49961 * 214.98023 * 22 20 3 37 37 H 1.08996 * 117.49679 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6245 0.8155 5 8 3.1302 -0.5234 -1.2646 6 6 3.3340 -1.8482 -1.3373 7 8 3.1146 -2.5467 -0.3762 8 6 3.8354 -2.4643 -2.6179 9 6 3.9803 -3.9762 -2.4340 10 6 4.4899 -4.6017 -3.7340 11 6 4.6354 -6.1136 -3.5498 12 6 5.1379 -6.7295 -4.8301 13 1 5.3336 -6.1052 -5.6893 14 6 5.3470 -8.0903 -4.9048 15 7 5.1083 -8.8507 -3.8587 16 14 5.9692 -8.8538 -6.4920 17 1 7.2892 -8.2685 -6.8387 18 1 6.1106 -10.3213 -6.3132 19 1 5.0032 -8.5788 -7.5857 20 6 3.1554 1.4311 0.1878 21 6 4.1916 1.6734 1.2870 22 6 2.7524 2.1619 1.4702 23 1 -1.0500 0.0000 0.0009 24 1 3.1258 -2.2626 -3.4203 25 1 4.8041 -2.0345 -2.8730 26 1 4.6897 -4.1783 -1.6315 27 1 3.0115 -4.4057 -2.1790 28 1 3.7807 -4.3997 -4.5367 29 1 5.4589 -4.1721 -3.9885 30 1 5.3448 -6.3152 -2.7472 31 1 3.6667 -6.5435 -3.2950 32 1 5.2557 -9.8080 -3.9112 33 1 3.2403 2.0233 -0.7234 34 1 4.5102 0.8138 1.8767 35 1 4.9580 2.4253 1.0992 36 1 2.5727 3.2348 1.4028 37 1 2.1240 1.6237 2.1798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805902461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -31.174461 kcal Electronic energy + Delta-G solvation = -17061.691850 eV Core-core repulsion = 14191.911353 eV Total energy + Delta-G solvation = -2869.780497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65821 -38.18192 -36.31651 -34.97502 -33.26558 -32.65888 -30.05085 -28.17689 -25.72120 -22.90553 -22.71619 -21.66798 -20.60513 -20.01983 -18.73023 -17.76717 -16.70346 -16.35525 -16.16764 -15.44875 -14.82800 -14.64015 -14.40822 -13.87515 -13.20062 -12.69120 -12.40851 -12.28117 -11.95598 -11.73480 -11.68215 -11.30433 -11.07513 -10.99252 -10.82838 -10.60185 -10.58368 -10.54236 -10.46143 -10.43105 -10.29729 -9.64298 -9.28109 -9.02727 -8.30927 -5.95881 -3.98554 2.03293 2.25703 2.50777 3.00656 3.34707 3.35507 3.39856 3.42190 4.03965 4.32643 4.48184 4.49857 4.53471 4.81656 4.97165 5.11942 5.25493 5.27572 5.27959 5.39531 5.48572 5.61160 5.67771 5.71412 5.80154 6.06011 6.19684 6.37619 6.47794 6.77088 6.95112 7.16629 7.29257 7.72400 7.77724 7.87570 8.04918 8.46575 9.08861 9.65183 11.15462 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050245 B = 0.003006 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.134506 B = 9313.933200 C = 9474.151238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.207 4.207 3 C 0.230 3.770 4 H 0.106 0.894 5 O -0.346 6.346 6 C 0.460 3.540 7 O -0.501 6.501 8 C -0.110 4.110 9 C -0.109 4.109 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.165 4.165 23 H 0.222 0.778 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 22.533 8.674 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.208 4.208 3 C 0.176 3.824 4 H 0.124 0.876 5 O -0.264 6.264 6 C 0.303 3.697 7 O -0.387 6.387 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.170 4.170 21 C -0.208 4.208 22 C -0.202 4.202 23 H 0.239 0.761 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.402 22.146 9.056 24.528 hybrid contribution 0.022 -0.550 -0.745 0.926 sum -5.380 21.596 8.310 23.757 Atomic orbital electron populations 1.24996 0.95849 0.99618 0.97859 1.23005 0.94261 1.01225 1.02273 1.18740 0.83598 0.93779 0.86295 0.87630 1.86677 1.76697 1.25752 1.37235 1.24338 0.73941 0.79942 0.91484 1.90670 1.47460 1.61858 1.38726 1.21629 1.03398 0.97903 0.91865 1.21588 1.02713 0.89896 1.00436 1.21652 0.99411 0.99538 0.94149 1.19090 0.97175 0.88424 0.96985 1.21240 1.44081 0.92403 0.98266 0.92732 1.25041 0.95719 0.97451 0.96332 1.69962 1.49078 1.05161 1.29306 0.86660 0.79389 0.78063 0.83882 1.20258 1.21320 1.20264 1.22074 1.05079 0.94489 0.95387 1.23162 0.92620 1.03873 1.01190 1.22983 0.98196 1.00671 0.98301 0.76083 0.87803 0.87682 0.91482 0.91549 0.93194 0.93153 0.96541 0.96561 0.92964 0.86046 0.88245 0.87904 0.87968 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.21 -2.54 12.54 -37.12 -0.47 -3.00 16 3 C 0.23 2.75 2.65 -29.52 -0.08 2.67 16 4 H 0.11 1.32 6.91 -51.93 -0.36 0.96 16 5 O -0.35 -4.62 9.85 -39.26 -0.39 -5.01 16 6 C 0.46 6.87 7.91 36.00 0.28 7.16 16 7 O -0.50 -8.95 15.20 -18.75 -0.29 -9.24 16 8 C -0.11 -1.51 5.81 -27.89 -0.16 -1.68 16 9 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.15 -1.37 5.48 -90.62 -0.50 -1.86 16 21 C -0.17 -1.26 10.18 -26.69 -0.27 -1.53 16 22 C -0.16 -1.18 9.86 -26.69 -0.26 -1.44 16 23 H 0.22 1.41 7.80 -54.09 -0.42 0.99 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -33.12 328.51 -7.51 -40.63 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.81 Total: -2.84 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.69 Total: -18.61 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.67 Total: -14.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.12 -7.51 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805902461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.455 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds