Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47275 * 307.48063 * 3 2 1 5 5 O 1.45206 * 109.47027 * 67.48098 * 3 2 1 6 6 C 1.34232 * 116.99998 * 269.99582 * 5 3 2 7 7 O 1.20825 * 119.99673 * 0.02562 * 6 5 3 8 8 C 1.50695 * 119.99791 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47053 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47312 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47312 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47057 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00760 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00181 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99941 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47329 * 59.99871 * 16 14 12 18 18 H 1.48502 * 109.47227 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47644 * 299.99929 * 16 14 12 20 20 C 1.53002 * 109.47212 * 187.48056 * 3 2 1 21 21 C 1.52998 * 117.50041 * 128.74960 * 20 3 2 22 22 C 1.53002 * 117.49740 * 60.08326 * 20 3 2 23 23 H 4.18739 * 15.04013 * 359.97438 * 4 2 1 24 24 H 1.08994 * 109.47325 * 300.00431 * 8 6 5 25 25 H 1.09007 * 109.47169 * 60.00364 * 8 6 5 26 26 H 1.09002 * 109.46963 * 299.99930 * 9 8 6 27 27 H 1.08999 * 109.47282 * 59.99694 * 9 8 6 28 28 H 1.09002 * 109.46723 * 299.99678 * 10 9 8 29 29 H 1.09007 * 109.47365 * 59.99726 * 10 9 8 30 30 H 1.09002 * 109.46963 * 299.99531 * 11 10 9 31 31 H 1.08999 * 109.47282 * 59.99295 * 11 10 9 32 32 H 0.96997 * 119.99957 * 180.02562 * 15 14 12 33 33 H 1.09002 * 115.54829 * 274.42362 * 20 3 2 34 34 H 1.09001 * 117.49742 * 359.97438 * 21 20 3 35 35 H 1.08994 * 117.49777 * 145.02659 * 21 20 3 36 36 H 1.08997 * 117.49961 * 214.98023 * 22 20 3 37 37 H 1.08996 * 117.49679 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6245 0.8155 5 8 3.1302 -0.5234 -1.2646 6 6 3.3340 -1.8482 -1.3373 7 8 3.1146 -2.5467 -0.3762 8 6 3.8354 -2.4643 -2.6179 9 6 3.9803 -3.9762 -2.4340 10 6 4.4899 -4.6017 -3.7340 11 6 4.6354 -6.1136 -3.5498 12 6 5.1379 -6.7295 -4.8301 13 1 5.3336 -6.1052 -5.6893 14 6 5.3470 -8.0903 -4.9048 15 7 5.1083 -8.8507 -3.8587 16 14 5.9692 -8.8538 -6.4920 17 1 7.2892 -8.2685 -6.8387 18 1 6.1106 -10.3213 -6.3132 19 1 5.0032 -8.5788 -7.5857 20 6 3.1554 1.4311 0.1878 21 6 4.1916 1.6734 1.2870 22 6 2.7524 2.1619 1.4702 23 1 -1.0500 0.0000 0.0009 24 1 3.1258 -2.2626 -3.4203 25 1 4.8041 -2.0345 -2.8730 26 1 4.6897 -4.1783 -1.6315 27 1 3.0115 -4.4057 -2.1790 28 1 3.7807 -4.3997 -4.5367 29 1 5.4589 -4.1721 -3.9885 30 1 5.3448 -6.3152 -2.7472 31 1 3.6667 -6.5435 -3.2950 32 1 5.2557 -9.8080 -3.9112 33 1 3.2403 2.0233 -0.7234 34 1 4.5102 0.8138 1.8767 35 1 4.9580 2.4253 1.0992 36 1 2.5727 3.2348 1.4028 37 1 2.1240 1.6237 2.1798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805902461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -48.622378 kcal Electronic energy + Delta-G solvation = -17062.448449 eV Core-core repulsion = 14191.911353 eV Total energy + Delta-G solvation = -2870.537096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77195 -39.02783 -37.32960 -36.63043 -34.68175 -34.06984 -31.73681 -29.21719 -27.45621 -24.55374 -23.36623 -22.44188 -22.05915 -21.47353 -19.60050 -18.87908 -18.38708 -17.71685 -17.41505 -16.51958 -16.33879 -15.94720 -15.41743 -15.07391 -14.57411 -14.27116 -13.87317 -13.61409 -13.38759 -13.08433 -12.80986 -12.51127 -12.39416 -12.32469 -12.21308 -12.19917 -11.98941 -11.63724 -11.41598 -11.39171 -11.30769 -11.27641 -11.17676 -11.03484 -10.53736 -8.18363 -6.30291 1.05281 1.13358 1.41184 1.44914 1.52731 1.67233 2.08277 2.42619 2.69449 3.14584 3.25647 3.55563 3.77549 3.83112 3.90514 4.06512 4.09220 4.13482 4.33978 4.55787 4.62360 4.72121 4.75962 4.84939 4.88027 4.94947 5.05748 5.13167 5.17844 5.26264 5.31774 5.39585 5.56365 5.77742 5.88354 6.25681 6.46722 6.63596 6.88131 7.39334 8.93709 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050245 B = 0.003006 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.134506 B = 9313.933200 C = 9474.151238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.257 4.257 3 C 0.225 3.775 4 H 0.091 0.909 5 O -0.342 6.342 6 C 0.463 3.537 7 O -0.539 6.539 8 C -0.101 4.101 9 C -0.100 4.100 10 C -0.096 4.096 11 C 0.019 3.981 12 C -0.543 4.543 13 H 0.066 0.934 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.165 4.165 21 C -0.168 4.168 22 C -0.154 4.154 23 H 0.257 0.743 24 H 0.128 0.872 25 H 0.134 0.866 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.065 0.935 30 H -0.013 1.013 31 H -0.014 1.014 32 H 0.263 0.737 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 24.468 7.227 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.257 4.257 3 C 0.171 3.829 4 H 0.108 0.892 5 O -0.259 6.259 6 C 0.308 3.692 7 O -0.428 6.428 8 C -0.138 4.138 9 C -0.138 4.138 10 C -0.133 4.133 11 C -0.018 4.018 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.183 4.183 21 C -0.204 4.204 22 C -0.191 4.191 23 H 0.273 0.727 24 H 0.146 0.854 25 H 0.152 0.848 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.005 0.995 31 H 0.004 0.996 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.408 24.120 7.600 25.860 hybrid contribution -0.045 -1.134 -0.222 1.157 sum -5.453 22.985 7.378 24.749 Atomic orbital electron populations 1.25908 0.96732 0.97818 0.95750 1.23392 0.95042 1.03015 1.04230 1.18928 0.84059 0.95024 0.84936 0.89169 1.86649 1.76389 1.24636 1.38257 1.24506 0.73080 0.80308 0.91265 1.90661 1.49264 1.62779 1.40123 1.21528 1.05664 0.94725 0.91898 1.21363 1.01140 0.92854 0.98463 1.21442 1.00782 0.95245 0.95870 1.19046 0.94534 0.92763 0.95465 1.21736 1.43960 0.93128 0.99260 0.91534 1.26076 0.95816 0.98181 1.00251 1.70119 1.50275 1.05537 1.31910 0.85451 0.79300 0.76899 0.79097 1.18907 1.21112 1.18957 1.22075 1.06807 0.93023 0.96443 1.23258 0.93128 1.04067 0.99995 1.23072 0.97877 1.01449 0.96683 0.72682 0.85360 0.84812 0.92943 0.93308 0.91864 0.91645 0.99467 0.99598 0.92846 0.85483 0.88813 0.86160 0.86050 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.26 -6.16 12.54 31.13 0.39 -5.77 16 3 C 0.22 5.36 2.65 28.79 0.08 5.44 16 4 H 0.09 2.37 6.91 -2.38 -0.02 2.35 16 5 O -0.34 -8.94 9.85 -51.43 -0.51 -9.45 16 6 C 0.46 13.69 7.91 71.23 0.56 14.25 16 7 O -0.54 -19.79 15.20 21.97 0.33 -19.45 16 8 C -0.10 -2.59 5.81 29.85 0.17 -2.42 16 9 C -0.10 -3.52 4.50 30.59 0.14 -3.39 16 10 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 11 C 0.02 1.03 4.97 29.85 0.15 1.18 16 12 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 14 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 15 N -0.94 -58.84 13.29 21.45 0.28 -58.55 16 16 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 20 C -0.17 -2.82 5.48 -10.79 -0.06 -2.88 16 21 C -0.17 -2.26 10.18 30.62 0.31 -1.95 16 22 C -0.15 -1.99 9.86 30.62 0.30 -1.69 16 23 H 0.26 2.54 7.80 -4.42 -0.03 2.51 16 24 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 25 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 27 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 30 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.28 328.51 7.49 -65.79 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.02 Total: 8.18 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.33 Total: -33.21 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.28 Total: -58.55 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.17 Total: -28.90 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.28 7.49 -65.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805902461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.163 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds