Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47150 * 146.81566 * 3 2 1 5 5 C 1.52998 * 109.47356 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47356 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47694 * 175.76389 * 6 5 4 8 8 O 1.20827 * 119.99532 * 5.67442 * 7 6 5 9 9 O 1.34227 * 120.00591 * 185.67292 * 7 6 5 10 10 C 1.45199 * 116.99946 * 174.88200 * 9 7 6 11 11 C 1.50698 * 112.84720 * 65.01548 * 10 9 7 12 12 H 1.08008 * 119.99884 * 244.59759 * 11 10 9 13 13 C 1.37874 * 120.00214 * 64.60353 * 11 10 9 14 14 N 1.31521 * 120.00010 * 186.60499 * 13 11 10 15 15 Si 1.86799 * 119.99880 * 6.60248 * 13 11 10 16 16 H 1.48499 * 109.47203 * 93.05186 * 15 13 11 17 17 H 1.48509 * 109.47120 * 213.04680 * 15 13 11 18 18 H 1.48497 * 109.47405 * 333.04579 * 15 13 11 19 19 C 1.53774 * 113.61465 * 293.81659 * 10 9 7 20 20 C 1.53952 * 87.02202 * 220.04767 * 19 10 9 21 21 C 1.53784 * 113.61245 * 196.20874 * 10 9 7 22 22 H 4.44653 * 5.63363 * 180.02562 * 4 1 2 23 23 H 1.09004 * 109.46828 * 26.81667 * 3 2 1 24 24 H 1.08995 * 109.47099 * 266.81627 * 3 2 1 25 25 H 1.08998 * 109.47187 * 59.99578 * 4 3 2 26 26 H 1.09005 * 109.47323 * 299.99962 * 4 3 2 27 27 H 1.09004 * 109.46655 * 60.00081 * 5 4 3 28 28 H 1.08995 * 109.47067 * 300.00167 * 5 4 3 29 29 H 1.09007 * 109.47067 * 295.76959 * 6 5 4 30 30 H 1.08999 * 109.47300 * 55.76000 * 6 5 4 31 31 H 0.97004 * 119.99752 * 179.97438 * 14 13 11 32 32 H 1.09002 * 113.61681 * 334.56920 * 19 10 9 33 33 H 1.08998 * 113.61587 * 105.47463 * 19 10 9 34 34 H 1.08998 * 113.53836 * 270.81401 * 20 19 10 35 35 H 1.08997 * 113.74459 * 139.94194 * 20 19 10 36 36 H 1.08994 * 113.61256 * 254.52850 * 21 10 9 37 37 H 1.08998 * 113.61001 * 25.34956 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.2081 -0.7895 5 6 4.6854 1.2092 -0.7890 6 6 5.1949 2.4170 -1.5780 7 6 6.6981 2.4766 -1.4904 8 8 7.3075 1.5846 -0.9493 9 8 7.3601 3.5206 -2.0134 10 6 8.7945 3.5690 -1.7930 11 6 9.5282 2.4369 -2.4645 12 1 10.0480 1.7014 -1.8684 13 6 9.5361 2.3400 -3.8398 14 7 10.0636 1.2851 -4.4218 15 14 8.7974 3.7071 -4.8766 16 1 9.8606 4.6736 -5.2515 17 1 8.1993 3.1277 -6.1063 18 1 7.7451 4.4065 -4.0966 19 6 9.1848 3.7678 -0.3190 20 6 10.2895 4.7145 -0.8227 21 6 9.4130 4.9506 -2.0641 22 1 -1.0502 -0.0002 0.0004 23 1 3.0097 -0.9164 -0.4636 24 1 3.0093 0.0579 1.0260 25 1 2.7917 2.1251 -0.3260 26 1 2.7922 1.1509 -1.8156 27 1 5.0495 0.2922 -1.2524 28 1 5.0484 1.2666 0.2372 29 1 4.8952 2.3219 -2.6217 30 1 4.7701 3.3296 -1.1598 31 1 10.0687 1.2168 -5.3894 32 1 8.4176 4.2676 0.2723 33 1 9.5664 2.8646 0.1572 34 1 11.2297 4.2087 -1.0419 35 1 10.4208 5.6033 -0.2055 36 1 9.9784 5.0009 -2.9945 37 1 8.7078 5.7742 -1.9522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = -26.776465 kcal Electronic energy + Delta-G solvation = -18218.375804 eV Core-core repulsion = 15348.786018 eV Total energy + Delta-G solvation = -2869.589786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58834 -37.55320 -36.05839 -34.41003 -33.10052 -32.32627 -29.91275 -26.71857 -25.25862 -24.95794 -22.83342 -21.36129 -19.78647 -18.56043 -18.12563 -17.10495 -15.96558 -15.71606 -15.38479 -15.20183 -14.55184 -14.34220 -13.82016 -13.41085 -13.24280 -12.77121 -12.52400 -11.86909 -11.79719 -11.67794 -11.32437 -11.20268 -11.00670 -10.94406 -10.61930 -10.56298 -10.27209 -10.18552 -10.14303 -9.97563 -9.79264 -9.38736 -8.99128 -8.74138 -8.52515 -6.19010 -4.24766 2.68685 2.72358 3.25777 3.30213 3.41453 3.50664 3.81522 4.26841 4.39365 4.95885 4.96974 5.10052 5.21356 5.40158 5.47168 5.50928 5.56927 5.63969 5.74324 5.77640 5.84665 5.93222 5.95221 5.99297 6.25603 6.32267 6.36410 6.39287 6.46907 6.64441 6.84333 6.94127 7.25823 7.49506 7.54791 7.86664 8.42754 8.88083 9.04684 9.43005 10.91570 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.005167 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.254602 B = 5417.643411 C = 5823.404944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C -0.017 4.017 4 C -0.113 4.113 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.454 3.546 8 O -0.494 6.494 9 O -0.371 6.371 10 C 0.200 3.800 11 C -0.504 4.504 12 H 0.084 0.916 13 C 0.083 3.917 14 N -0.881 5.881 15 Si 0.864 3.136 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.235 1.235 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.134 4.134 22 H 0.215 0.785 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.266 0.734 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 3.444 6.581 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.178 4.178 3 C -0.053 4.053 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.157 4.157 7 C 0.295 3.705 8 O -0.381 6.381 9 O -0.289 6.289 10 C 0.166 3.834 11 C -0.540 4.540 12 H 0.102 0.898 13 C -0.122 4.122 14 N -0.517 5.517 15 Si 0.691 3.309 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.158 1.158 19 C -0.184 4.184 20 C -0.162 4.162 21 C -0.171 4.171 22 H 0.232 0.768 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.492 3.100 6.571 14.451 hybrid contribution -0.481 0.514 -0.793 1.061 sum -12.973 3.614 5.778 14.654 Atomic orbital electron populations 1.24872 0.95957 1.01517 1.01744 1.23306 0.94710 0.99929 0.99848 1.18808 0.84303 1.00129 1.02096 1.21552 0.95580 0.97380 1.00560 1.21392 0.93536 0.98238 1.01337 1.21388 0.90694 1.00484 1.03169 1.23011 0.90294 0.80949 0.76203 1.90604 1.69849 1.37389 1.40293 1.86546 1.26806 1.45565 1.69999 1.21613 0.74585 0.94324 0.92842 1.20791 1.31873 1.09721 0.91646 0.89811 1.25009 0.93789 0.95418 0.97973 1.69942 1.43962 1.27461 1.10381 0.87069 0.80972 0.82965 0.79910 1.20520 1.21879 1.15848 1.23353 0.97864 0.99384 0.97781 1.22512 0.98094 0.98593 0.96978 1.23277 0.98150 0.97031 0.98649 0.76820 0.89256 0.89359 0.91543 0.91432 0.90594 0.90924 0.88740 0.89043 0.92402 0.91930 0.91201 0.89579 0.92458 0.91394 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.18 -1.98 13.34 -37.12 -0.50 -2.47 16 3 C -0.02 -0.17 5.70 -29.52 -0.17 -0.34 16 4 C -0.11 -1.20 5.17 -26.73 -0.14 -1.34 16 5 C -0.11 -1.44 4.51 -26.73 -0.12 -1.56 16 6 C -0.12 -1.83 5.81 -27.89 -0.16 -1.99 16 7 C 0.45 9.79 7.51 36.00 0.27 10.06 16 8 O -0.49 -12.16 14.45 -18.75 -0.27 -12.43 16 9 O -0.37 -8.66 8.15 -39.25 -0.32 -8.98 16 10 C 0.20 4.82 0.24 -90.96 -0.02 4.79 16 11 C -0.50 -14.32 7.63 -34.44 -0.26 -14.58 16 12 H 0.08 2.65 8.05 -52.48 -0.42 2.23 16 13 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 14 N -0.88 -26.92 13.96 55.43 0.77 -26.15 16 15 Si 0.86 21.44 24.59 -169.99 -4.18 17.27 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.24 -5.60 5.61 56.52 0.32 -5.29 16 19 C -0.15 -3.07 6.65 -25.83 -0.17 -3.25 16 20 C -0.12 -2.36 7.81 -25.83 -0.20 -2.57 16 21 C -0.13 -2.82 6.04 -25.91 -0.16 -2.98 16 22 H 0.21 1.35 7.80 -54.08 -0.42 0.93 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.11 8.13 -51.93 -0.42 0.68 16 28 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 29 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.50 5.67 -51.93 -0.29 1.20 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -32.85 311.64 -6.30 -39.16 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.85 Total: 2.01 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.16 Total: -15.57 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.59 Total: -21.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.18 Total: 17.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.85 -6.30 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.381 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds