Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47150 * 146.81566 * 3 2 1 5 5 C 1.52998 * 109.47356 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47356 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47694 * 175.76389 * 6 5 4 8 8 O 1.20827 * 119.99532 * 5.67442 * 7 6 5 9 9 O 1.34227 * 120.00591 * 185.67292 * 7 6 5 10 10 C 1.45199 * 116.99946 * 174.88200 * 9 7 6 11 11 C 1.50698 * 112.84720 * 65.01548 * 10 9 7 12 12 H 1.08008 * 119.99884 * 244.59759 * 11 10 9 13 13 C 1.37874 * 120.00214 * 64.60353 * 11 10 9 14 14 N 1.31521 * 120.00010 * 186.60499 * 13 11 10 15 15 Si 1.86799 * 119.99880 * 6.60248 * 13 11 10 16 16 H 1.48499 * 109.47203 * 93.05186 * 15 13 11 17 17 H 1.48509 * 109.47120 * 213.04680 * 15 13 11 18 18 H 1.48497 * 109.47405 * 333.04579 * 15 13 11 19 19 C 1.53774 * 113.61465 * 293.81659 * 10 9 7 20 20 C 1.53952 * 87.02202 * 220.04767 * 19 10 9 21 21 C 1.53784 * 113.61245 * 196.20874 * 10 9 7 22 22 H 4.44653 * 5.63363 * 180.02562 * 4 1 2 23 23 H 1.09004 * 109.46828 * 26.81667 * 3 2 1 24 24 H 1.08995 * 109.47099 * 266.81627 * 3 2 1 25 25 H 1.08998 * 109.47187 * 59.99578 * 4 3 2 26 26 H 1.09005 * 109.47323 * 299.99962 * 4 3 2 27 27 H 1.09004 * 109.46655 * 60.00081 * 5 4 3 28 28 H 1.08995 * 109.47067 * 300.00167 * 5 4 3 29 29 H 1.09007 * 109.47067 * 295.76959 * 6 5 4 30 30 H 1.08999 * 109.47300 * 55.76000 * 6 5 4 31 31 H 0.97004 * 119.99752 * 179.97438 * 14 13 11 32 32 H 1.09002 * 113.61681 * 334.56920 * 19 10 9 33 33 H 1.08998 * 113.61587 * 105.47463 * 19 10 9 34 34 H 1.08998 * 113.53836 * 270.81401 * 20 19 10 35 35 H 1.08997 * 113.74459 * 139.94194 * 20 19 10 36 36 H 1.08994 * 113.61256 * 254.52850 * 21 10 9 37 37 H 1.08998 * 113.61001 * 25.34956 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.2081 -0.7895 5 6 4.6854 1.2092 -0.7890 6 6 5.1949 2.4170 -1.5780 7 6 6.6981 2.4766 -1.4904 8 8 7.3075 1.5846 -0.9493 9 8 7.3601 3.5206 -2.0134 10 6 8.7945 3.5690 -1.7930 11 6 9.5282 2.4369 -2.4645 12 1 10.0480 1.7014 -1.8684 13 6 9.5361 2.3400 -3.8398 14 7 10.0636 1.2851 -4.4218 15 14 8.7974 3.7071 -4.8766 16 1 9.8606 4.6736 -5.2515 17 1 8.1993 3.1277 -6.1063 18 1 7.7451 4.4065 -4.0966 19 6 9.1848 3.7678 -0.3190 20 6 10.2895 4.7145 -0.8227 21 6 9.4130 4.9506 -2.0641 22 1 -1.0502 -0.0002 0.0004 23 1 3.0097 -0.9164 -0.4636 24 1 3.0093 0.0579 1.0260 25 1 2.7917 2.1251 -0.3260 26 1 2.7922 1.1509 -1.8156 27 1 5.0495 0.2922 -1.2524 28 1 5.0484 1.2666 0.2372 29 1 4.8952 2.3219 -2.6217 30 1 4.7701 3.3296 -1.1598 31 1 10.0687 1.2168 -5.3894 32 1 8.4176 4.2676 0.2723 33 1 9.5664 2.8646 0.1572 34 1 11.2297 4.2087 -1.0419 35 1 10.4208 5.6033 -0.2055 36 1 9.9784 5.0009 -2.9945 37 1 8.7078 5.7742 -1.9522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = -46.112199 kcal Electronic energy + Delta-G solvation = -18219.214265 eV Core-core repulsion = 15348.786018 eV Total energy + Delta-G solvation = -2870.428246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34521 -39.21001 -37.07147 -36.16789 -34.52421 -34.08588 -30.93446 -28.68911 -26.64872 -26.51694 -24.50437 -22.48577 -21.26039 -20.47522 -18.97292 -18.85486 -17.40958 -17.38764 -17.20647 -16.80156 -15.97706 -15.60935 -15.13963 -14.90862 -14.79483 -14.39124 -13.77410 -13.52338 -13.33423 -12.95716 -12.83056 -12.75491 -12.57029 -12.33927 -12.16527 -11.96499 -11.78221 -11.66940 -11.60634 -11.24634 -11.07786 -10.97565 -10.95530 -10.58789 -10.51378 -8.40492 -6.51667 1.30578 1.33226 1.55669 1.68786 1.89509 1.95295 2.22808 2.32630 2.99306 3.51731 3.80568 3.86528 3.93480 4.03173 4.04600 4.15475 4.34811 4.41609 4.48334 4.64831 4.73246 4.78220 4.82939 4.86535 4.90001 5.04570 5.10295 5.14328 5.22547 5.22925 5.32430 5.43284 5.55955 5.65203 5.93007 6.37987 6.58206 6.74210 7.17579 7.30210 8.74922 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.005167 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.254602 B = 5417.643411 C = 5823.404944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.217 4.217 3 C -0.018 4.018 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.110 4.110 7 C 0.441 3.559 8 O -0.537 6.537 9 O -0.373 6.373 10 C 0.179 3.821 11 C -0.508 4.508 12 H 0.025 0.975 13 C 0.025 3.975 14 N -0.936 5.936 15 Si 0.929 3.071 16 H -0.262 1.262 17 H -0.295 1.295 18 H -0.213 1.213 19 C -0.142 4.142 20 C -0.111 4.111 21 C -0.128 4.128 22 H 0.244 0.756 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 6.389 6.842 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.217 4.217 3 C -0.054 4.054 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.148 4.148 7 C 0.285 3.715 8 O -0.426 6.426 9 O -0.291 6.291 10 C 0.145 3.855 11 C -0.545 4.545 12 H 0.044 0.956 13 C -0.174 4.174 14 N -0.575 5.575 15 Si 0.752 3.248 16 H -0.187 1.187 17 H -0.222 1.222 18 H -0.135 1.135 19 C -0.180 4.180 20 C -0.148 4.148 21 C -0.165 4.165 22 H 0.261 0.739 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.068 6.059 6.851 17.626 hybrid contribution 0.299 -0.532 -0.769 0.981 sum -14.769 5.528 6.083 16.902 Atomic orbital electron populations 1.25701 0.96882 0.99999 1.00309 1.23641 0.95404 1.01374 1.01242 1.18781 0.84372 0.99887 1.02374 1.21427 0.93000 0.98264 1.01108 1.21336 0.95569 0.96598 1.00433 1.21546 0.85689 1.02858 1.04689 1.24312 0.92681 0.79721 0.74747 1.90600 1.71276 1.38645 1.42092 1.86514 1.25967 1.46108 1.70468 1.21651 0.74627 0.94561 0.94674 1.20854 1.31989 1.10052 0.91599 0.95634 1.25932 0.94310 0.97884 0.99293 1.70094 1.46501 1.30047 1.10810 0.86063 0.81025 0.79936 0.77815 1.18745 1.22189 1.13521 1.23341 0.99343 0.99160 0.96173 1.22461 0.96382 0.99449 0.96484 1.23309 0.98530 0.95729 0.98958 0.73923 0.89434 0.88829 0.90175 0.91008 0.92672 0.91506 0.87273 0.85472 0.92260 0.89263 0.94030 0.91283 0.87811 0.92429 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.68 19.25 74.32 1.43 -2.25 16 2 C -0.22 -4.44 13.34 31.13 0.42 -4.03 16 3 C -0.02 -0.34 5.70 28.79 0.16 -0.17 16 4 C -0.10 -1.93 5.17 30.59 0.16 -1.77 16 5 C -0.10 -2.61 4.51 30.59 0.14 -2.47 16 6 C -0.11 -3.13 5.81 29.85 0.17 -2.96 16 7 C 0.44 18.74 7.51 71.23 0.53 19.28 16 8 O -0.54 -27.22 14.45 21.96 0.32 -26.91 16 9 O -0.37 -16.73 8.15 -51.39 -0.42 -17.15 16 10 C 0.18 8.50 0.24 -11.02 0.00 8.50 16 11 C -0.51 -30.05 7.63 25.60 0.20 -29.86 16 12 H 0.03 1.74 8.05 -2.91 -0.02 1.72 16 13 C 0.03 1.51 5.47 84.65 0.46 1.97 16 14 N -0.94 -59.77 13.96 21.45 0.30 -59.47 16 15 Si 0.93 44.02 24.59 68.60 1.69 45.71 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 H -0.21 -9.26 5.61 99.48 0.56 -8.70 16 19 C -0.14 -5.87 6.65 31.18 0.21 -5.67 16 20 C -0.11 -3.95 7.81 31.18 0.24 -3.70 16 21 C -0.13 -5.01 6.04 31.12 0.19 -4.82 16 22 H 0.24 2.27 7.80 -4.41 -0.03 2.24 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 28 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 29 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 30 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 32 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.06 2.38 5.67 -2.39 -0.01 2.36 16 37 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -75.64 311.64 7.07 -68.57 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.88 Total: 17.20 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.31 Total: -27.95 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.10 Total: -44.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.69 Total: 45.71 kcal Total: -75.64 7.07 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.457 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds