Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 123.61600 * 3 2 1 5 5 C 1.53007 * 109.46616 * 151.94867 * 4 3 2 6 6 C 1.52999 * 109.46930 * 180.02562 * 5 4 3 7 7 C 1.50690 * 109.47228 * 179.97438 * 6 5 4 8 8 O 1.20826 * 120.00138 * 359.97438 * 7 6 5 9 9 O 1.34233 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00218 * 185.11217 * 9 7 6 11 11 C 1.50708 * 112.85091 * 296.95048 * 10 9 7 12 12 H 1.07997 * 119.99819 * 115.13141 * 11 10 9 13 13 C 1.37876 * 119.99332 * 295.40591 * 11 10 9 14 14 N 1.31506 * 120.00578 * 4.93871 * 13 11 10 15 15 Si 1.86802 * 119.99405 * 184.94092 * 13 11 10 16 16 H 1.48507 * 109.46942 * 90.00130 * 15 13 11 17 17 H 1.48497 * 109.46928 * 209.99813 * 15 13 11 18 18 H 1.48496 * 109.47381 * 329.99987 * 15 13 11 19 19 C 1.53784 * 113.61372 * 68.13994 * 10 9 7 20 20 C 1.53959 * 87.01683 * 89.23308 * 19 10 9 21 21 C 1.53775 * 113.61765 * 165.74861 * 10 9 7 22 22 H 1.09003 * 109.46927 * 264.43340 * 1 2 3 23 23 H 1.08995 * 109.47350 * 24.43789 * 1 2 3 24 24 H 1.09001 * 109.46385 * 144.43637 * 1 2 3 25 25 H 1.08995 * 109.47247 * 31.94725 * 4 3 2 26 26 H 1.08995 * 109.47107 * 271.94632 * 4 3 2 27 27 H 1.09000 * 109.46952 * 60.00023 * 5 4 3 28 28 H 1.08995 * 109.47190 * 299.99714 * 5 4 3 29 29 H 1.09004 * 109.47019 * 59.99539 * 6 5 4 30 30 H 1.09008 * 109.46944 * 300.00481 * 6 5 4 31 31 H 0.96998 * 120.00189 * 184.99853 * 14 13 11 32 32 H 1.09001 * 113.61952 * 203.74948 * 19 10 9 33 33 H 1.08997 * 113.61659 * 334.65737 * 19 10 9 34 34 H 1.09001 * 113.53259 * 270.80951 * 20 19 10 35 35 H 1.08998 * 113.74460 * 139.94569 * 20 19 10 36 36 H 1.09002 * 113.61149 * 25.35358 * 21 10 9 37 37 H 1.09001 * 113.61374 * 156.16802 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0015 -0.0005 5 6 4.6269 1.2750 -0.6791 6 6 6.1568 1.2759 -0.6803 7 6 6.6580 2.5298 -1.3492 8 8 5.8721 3.3395 -1.7811 9 8 7.9775 2.7472 -1.4652 10 6 8.3890 4.0258 -2.0166 11 6 7.9311 4.2245 -3.4386 12 1 7.2226 5.0050 -3.6736 13 6 8.4125 3.4062 -4.4384 14 7 9.1945 2.3923 -4.1390 15 14 7.9537 3.7380 -6.2186 16 1 8.9547 4.6517 -6.8257 17 1 7.9316 2.4579 -6.9708 18 1 6.6103 4.3682 -6.2744 19 6 8.0819 5.2203 -1.0980 20 6 9.4672 4.9884 -0.4675 21 6 9.8787 4.3395 -1.7995 22 1 -0.3633 -0.0997 1.0229 23 1 -0.3634 0.9355 -0.4251 24 1 -0.3632 -0.8360 -0.5977 25 1 4.4818 -0.8702 -0.5444 26 1 4.4818 -0.0331 1.0263 27 1 4.2631 2.1467 -0.1352 28 1 4.2631 1.3097 -1.7060 29 1 6.5202 0.4041 -1.2245 30 1 6.5210 1.2409 0.3465 31 1 9.5916 1.8606 -4.8464 32 1 7.9969 6.1687 -1.6285 33 1 7.2537 5.0421 -0.4121 34 1 9.4527 4.2924 0.3712 35 1 10.0076 5.9085 -0.2447 36 1 10.4989 3.4512 -1.6794 37 1 10.2861 5.0455 -2.5232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -35.910105 kcal Electronic energy + Delta-G solvation = -18078.203392 eV Core-core repulsion = 15208.217541 eV Total energy + Delta-G solvation = -2869.985850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37477 -37.22532 -35.49537 -33.99596 -33.12000 -32.30981 -29.57545 -26.80319 -26.19614 -24.55833 -22.98386 -21.94152 -19.79914 -18.14136 -17.16915 -16.56297 -15.67513 -15.34189 -14.93583 -14.71668 -14.31458 -13.96696 -13.81837 -13.61968 -13.44972 -13.10915 -12.51797 -12.18269 -11.86758 -11.54857 -11.33303 -11.23832 -11.01307 -10.86466 -10.64348 -10.43245 -10.07963 -9.96520 -9.91215 -9.71357 -9.64834 -9.20977 -8.75730 -8.46900 -8.33366 -6.05057 -4.15330 2.72936 2.76241 3.28694 3.36097 3.42278 3.54266 3.96514 4.32139 4.41160 5.19585 5.22176 5.25903 5.34492 5.43119 5.51031 5.56168 5.68827 5.71058 5.74213 5.79251 5.85415 5.94094 5.97017 6.26250 6.36162 6.43945 6.48360 6.53232 6.79010 6.84035 7.18934 7.27006 7.55763 7.70160 7.84337 7.97389 8.39199 8.87263 9.26590 9.54284 10.99793 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.005430 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.718781 B = 5155.339394 C = 5942.878924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.208 4.208 3 C -0.175 4.175 4 C -0.008 4.008 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.458 3.542 8 O -0.509 6.509 9 O -0.338 6.338 10 C 0.234 3.766 11 C -0.518 4.518 12 H 0.065 0.935 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.097 4.097 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -4.271 8.614 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.208 4.208 3 C -0.175 4.175 4 C -0.044 4.044 5 C -0.138 4.138 6 C -0.156 4.156 7 C 0.300 3.700 8 O -0.398 6.398 9 O -0.254 6.254 10 C 0.200 3.800 11 C -0.555 4.555 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.504 5.504 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.190 4.190 20 C -0.189 4.189 21 C -0.134 4.134 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.436 -4.191 8.392 11.970 hybrid contribution -0.235 0.113 -1.119 1.149 sum -7.671 -4.078 7.272 11.330 Atomic orbital electron populations 1.18801 0.84885 1.02906 1.02639 1.22368 0.93946 1.02107 1.02416 1.22428 0.93707 1.00741 1.00615 1.18739 0.84225 0.99437 1.02040 1.21309 0.93517 0.96669 1.02314 1.21338 0.95740 0.96573 1.01936 1.22899 0.82418 0.87384 0.77279 1.90569 1.57221 1.47146 1.44890 1.86393 1.23349 1.41404 1.74210 1.20575 0.91889 0.76505 0.91019 1.21251 1.27126 1.16590 0.90527 0.91701 1.25048 0.94937 0.93905 0.99149 1.70055 1.31079 1.16673 1.32556 0.86629 0.79251 0.77699 0.84781 1.20416 1.21186 1.19666 1.23479 0.95500 1.00917 0.99145 1.23020 0.98092 0.99730 0.98099 1.22727 0.97138 0.99250 0.94316 0.90531 0.90300 0.90493 0.89441 0.89564 0.90954 0.90677 0.88447 0.88921 0.92944 0.90145 0.93207 0.91382 0.92921 0.91907 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.21 -2.74 14.13 -37.12 -0.52 -3.27 16 3 C -0.17 -2.44 13.34 -37.12 -0.50 -2.94 16 4 C -0.01 -0.10 5.70 -29.51 -0.17 -0.27 16 5 C -0.10 -1.53 4.46 -26.73 -0.12 -1.65 16 6 C -0.12 -1.94 5.81 -27.89 -0.16 -2.10 16 7 C 0.46 10.50 7.34 36.00 0.26 10.77 16 8 O -0.51 -13.08 14.20 -18.75 -0.27 -13.34 16 9 O -0.34 -8.50 9.83 -39.27 -0.39 -8.88 16 10 C 0.23 5.96 0.33 -90.96 -0.03 5.93 16 11 C -0.52 -14.61 7.16 -34.44 -0.25 -14.86 16 12 H 0.06 1.89 7.82 -52.49 -0.41 1.48 16 13 C 0.07 2.09 5.38 -17.82 -0.10 1.99 16 14 N -0.87 -24.69 12.79 55.43 0.71 -23.98 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.15 -3.40 6.97 -25.82 -0.18 -3.58 16 20 C -0.15 -2.98 8.03 -25.83 -0.21 -3.18 16 21 C -0.10 -2.22 7.08 -25.92 -0.18 -2.40 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 28 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 32 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16 33 H 0.05 1.10 7.55 -51.93 -0.39 0.71 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -32.41 321.24 -7.77 -40.18 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.85 Total: 0.03 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.79 Total: -15.52 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.71 Total: -23.98 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.65 Total: -22.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.41 -7.77 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.266 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds