Wall clock time and date at job start Mon Mar 30 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 123.61600 * 3 2 1 5 5 C 1.53007 * 109.46616 * 151.94867 * 4 3 2 6 6 C 1.52999 * 109.46930 * 180.02562 * 5 4 3 7 7 C 1.50690 * 109.47228 * 179.97438 * 6 5 4 8 8 O 1.20826 * 120.00138 * 359.97438 * 7 6 5 9 9 O 1.34233 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00218 * 185.11217 * 9 7 6 11 11 C 1.50708 * 112.85091 * 296.95048 * 10 9 7 12 12 H 1.07997 * 119.99819 * 115.13141 * 11 10 9 13 13 C 1.37876 * 119.99332 * 295.40591 * 11 10 9 14 14 N 1.31506 * 120.00578 * 4.93871 * 13 11 10 15 15 Si 1.86802 * 119.99405 * 184.94092 * 13 11 10 16 16 H 1.48507 * 109.46942 * 90.00130 * 15 13 11 17 17 H 1.48497 * 109.46928 * 209.99813 * 15 13 11 18 18 H 1.48496 * 109.47381 * 329.99987 * 15 13 11 19 19 C 1.53784 * 113.61372 * 68.13994 * 10 9 7 20 20 C 1.53959 * 87.01683 * 89.23308 * 19 10 9 21 21 C 1.53775 * 113.61765 * 165.74861 * 10 9 7 22 22 H 1.09003 * 109.46927 * 264.43340 * 1 2 3 23 23 H 1.08995 * 109.47350 * 24.43789 * 1 2 3 24 24 H 1.09001 * 109.46385 * 144.43637 * 1 2 3 25 25 H 1.08995 * 109.47247 * 31.94725 * 4 3 2 26 26 H 1.08995 * 109.47107 * 271.94632 * 4 3 2 27 27 H 1.09000 * 109.46952 * 60.00023 * 5 4 3 28 28 H 1.08995 * 109.47190 * 299.99714 * 5 4 3 29 29 H 1.09004 * 109.47019 * 59.99539 * 6 5 4 30 30 H 1.09008 * 109.46944 * 300.00481 * 6 5 4 31 31 H 0.96998 * 120.00189 * 184.99853 * 14 13 11 32 32 H 1.09001 * 113.61952 * 203.74948 * 19 10 9 33 33 H 1.08997 * 113.61659 * 334.65737 * 19 10 9 34 34 H 1.09001 * 113.53259 * 270.80951 * 20 19 10 35 35 H 1.08998 * 113.74460 * 139.94569 * 20 19 10 36 36 H 1.09002 * 113.61149 * 25.35358 * 21 10 9 37 37 H 1.09001 * 113.61374 * 156.16802 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0015 -0.0005 5 6 4.6269 1.2750 -0.6791 6 6 6.1568 1.2759 -0.6803 7 6 6.6580 2.5298 -1.3492 8 8 5.8721 3.3395 -1.7811 9 8 7.9775 2.7472 -1.4652 10 6 8.3890 4.0258 -2.0166 11 6 7.9311 4.2245 -3.4386 12 1 7.2226 5.0050 -3.6736 13 6 8.4125 3.4062 -4.4384 14 7 9.1945 2.3923 -4.1390 15 14 7.9537 3.7380 -6.2186 16 1 8.9547 4.6517 -6.8257 17 1 7.9316 2.4579 -6.9708 18 1 6.6103 4.3682 -6.2744 19 6 8.0819 5.2203 -1.0980 20 6 9.4672 4.9884 -0.4675 21 6 9.8787 4.3395 -1.7995 22 1 -0.3633 -0.0997 1.0229 23 1 -0.3634 0.9355 -0.4251 24 1 -0.3632 -0.8360 -0.5977 25 1 4.4818 -0.8702 -0.5444 26 1 4.4818 -0.0331 1.0263 27 1 4.2631 2.1467 -0.1352 28 1 4.2631 1.3097 -1.7060 29 1 6.5202 0.4041 -1.2245 30 1 6.5210 1.2409 0.3465 31 1 9.5916 1.8606 -4.8464 32 1 7.9969 6.1687 -1.6285 33 1 7.2537 5.0421 -0.4121 34 1 9.4527 4.2924 0.3712 35 1 10.0076 5.9085 -0.2447 36 1 10.4989 3.4512 -1.6794 37 1 10.2861 5.0455 -2.5232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:21 Heat of formation + Delta-G solvation = -52.878109 kcal Electronic energy + Delta-G solvation = -18078.939179 eV Core-core repulsion = 15208.217541 eV Total energy + Delta-G solvation = -2870.721638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20808 -38.96996 -36.66811 -35.84579 -34.43577 -34.18553 -30.64123 -28.53779 -27.54426 -26.36335 -24.67602 -23.41744 -21.39358 -19.98548 -19.05696 -17.86433 -17.19309 -16.93286 -16.66330 -16.63622 -15.95014 -15.40079 -15.10093 -14.70446 -14.44765 -14.36958 -13.93498 -13.45942 -13.40476 -13.34644 -13.19242 -12.96264 -12.76814 -12.47305 -12.34278 -11.97996 -11.89116 -11.81752 -11.66356 -11.07334 -10.78388 -10.68954 -10.57495 -10.44339 -10.27809 -8.17070 -6.33513 1.33295 1.35720 1.45598 1.70157 1.75814 1.78319 2.34225 2.37478 3.14105 3.38821 3.86882 3.97931 4.04659 4.06357 4.15436 4.31293 4.49095 4.60799 4.62617 4.74583 4.77511 4.82033 4.84650 4.85808 4.88995 5.04230 5.08763 5.13903 5.17282 5.29042 5.36745 5.51619 5.65734 5.76540 6.00873 6.48126 6.69224 6.72779 7.32852 7.46674 8.86737 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.005430 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.718781 B = 5155.339394 C = 5942.878924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.215 4.215 3 C -0.216 4.216 4 C 0.001 3.999 5 C -0.091 4.091 6 C -0.106 4.106 7 C 0.444 3.556 8 O -0.547 6.547 9 O -0.349 6.349 10 C 0.208 3.792 11 C -0.538 4.538 12 H 0.041 0.959 13 C 0.035 3.965 14 N -0.888 5.888 15 Si 0.943 3.057 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.151 4.151 20 C -0.123 4.123 21 C -0.097 4.097 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -4.970 9.727 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.215 4.215 3 C -0.216 4.216 4 C -0.035 4.035 5 C -0.129 4.129 6 C -0.143 4.143 7 C 0.289 3.711 8 O -0.438 6.438 9 O -0.266 6.266 10 C 0.174 3.826 11 C -0.575 4.575 12 H 0.059 0.941 13 C -0.168 4.168 14 N -0.526 5.526 15 Si 0.768 3.232 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.208 1.208 19 C -0.189 4.189 20 C -0.161 4.161 21 C -0.135 4.135 22 H 0.114 0.886 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.583 -4.895 9.511 13.112 hybrid contribution -0.279 0.338 -1.464 1.529 sum -7.862 -4.557 8.047 12.138 Atomic orbital electron populations 1.19067 0.82388 1.03974 1.04320 1.23436 0.95442 1.01028 1.01590 1.22988 0.94771 1.02026 1.01811 1.18712 0.83557 0.97948 1.03309 1.21185 0.92689 0.98125 1.00854 1.21441 0.96166 0.93320 1.03382 1.24172 0.81447 0.88891 0.76633 1.90543 1.57684 1.48957 1.46602 1.86370 1.24773 1.41242 1.74170 1.20831 0.93601 0.77745 0.90438 1.21413 1.26928 1.16362 0.92841 0.94077 1.25647 0.94963 0.93778 1.02429 1.70120 1.31777 1.17132 1.33548 0.85801 0.78616 0.77885 0.80881 1.18829 1.20503 1.20769 1.23424 0.97217 0.99544 0.98695 1.22879 0.95618 1.01031 0.96529 1.22676 0.95386 0.99013 0.96400 0.88558 0.89512 0.88866 0.87938 0.86998 0.92196 0.93532 0.87060 0.85161 0.92722 0.90358 0.93613 0.89944 0.89581 0.93022 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.66 10.32 70.18 0.72 0.07 16 2 C -0.21 -5.42 14.13 31.13 0.44 -4.98 16 3 C -0.22 -5.83 13.34 31.13 0.42 -5.42 16 4 C 0.00 0.02 5.70 28.79 0.16 0.19 16 5 C -0.09 -2.73 4.46 30.60 0.14 -2.59 16 6 C -0.11 -3.33 5.81 29.84 0.17 -3.16 16 7 C 0.44 20.46 7.34 71.23 0.52 20.98 16 8 O -0.55 -28.87 14.20 21.96 0.31 -28.56 16 9 O -0.35 -17.63 9.83 -51.45 -0.51 -18.13 16 10 C 0.21 10.69 0.33 -11.01 0.00 10.68 16 11 C -0.54 -31.09 7.16 25.60 0.18 -30.91 16 12 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 13 C 0.03 1.95 5.38 84.66 0.46 2.41 16 14 N -0.89 -50.95 12.79 21.45 0.27 -50.67 16 15 Si 0.94 45.07 29.54 68.60 2.03 47.10 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 19 C -0.15 -6.67 6.97 31.18 0.22 -6.45 16 20 C -0.12 -4.57 8.03 31.18 0.25 -4.32 16 21 C -0.10 -4.41 7.08 31.12 0.22 -4.19 16 22 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 28 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 29 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 30 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 31 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 32 H 0.08 3.42 8.09 -2.39 -0.02 3.40 16 33 H 0.05 2.01 7.55 -2.39 -0.02 1.99 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 3.47 8.09 -2.39 -0.02 3.45 16 Total: -1.00 -71.60 321.24 7.04 -64.56 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.04 Total: 13.39 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.90 Total: -27.68 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.27 Total: -50.67 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.19 Total: -46.69 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.60 7.04 -64.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.679 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds