Wall clock time and date at job start Mon Mar 30 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46754 * 216.32194 * 3 2 1 5 5 H 1.09005 * 109.47475 * 304.99795 * 4 3 2 6 6 O 1.45196 * 109.47521 * 65.00131 * 4 3 2 7 7 C 1.34228 * 117.00460 * 210.00165 * 6 4 3 8 8 O 1.20825 * 119.99860 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00447 * 179.97438 * 7 6 4 10 10 C 1.52996 * 109.47298 * 179.97438 * 9 7 6 11 11 C 1.53009 * 109.46981 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46688 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00401 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99636 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99879 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47050 * 90.00112 * 16 14 12 18 18 H 1.48493 * 109.47329 * 209.99712 * 16 14 12 19 19 H 1.48494 * 109.47697 * 330.00341 * 16 14 12 20 20 C 1.53003 * 109.46999 * 185.00240 * 4 3 2 21 21 C 1.53001 * 117.51964 * 111.28362 * 20 4 3 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 4 23 23 H 4.44648 * 5.63255 * 179.97438 * 4 1 2 24 24 H 1.08998 * 109.46783 * 96.32078 * 3 2 1 25 25 H 1.08999 * 109.47251 * 336.32046 * 3 2 1 26 26 H 1.09006 * 109.46880 * 299.99778 * 9 7 6 27 27 H 1.09002 * 109.47088 * 59.99630 * 9 7 6 28 28 H 1.08992 * 109.47343 * 299.99809 * 10 9 7 29 29 H 1.09002 * 109.47054 * 59.99976 * 10 9 7 30 30 H 1.09000 * 109.46720 * 300.00058 * 11 10 9 31 31 H 1.08993 * 109.46623 * 59.99899 * 11 10 9 32 32 H 0.96998 * 119.99852 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.54973 * 325.58146 * 20 4 3 34 34 H 1.09001 * 117.49733 * 214.97413 * 21 20 4 35 35 H 1.08995 * 117.49577 * 359.97438 * 21 20 4 36 36 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 37 37 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.1631 0.8544 5 1 2.7204 2.0959 0.4954 6 8 2.7715 0.9511 2.2385 7 6 2.5618 2.0453 2.9873 8 8 2.6951 3.1438 2.5023 9 6 2.1600 1.9036 4.4328 10 6 1.9865 3.2917 5.0523 11 6 1.5779 3.1478 6.5198 12 6 1.4064 4.5151 7.1298 13 1 1.5726 5.3983 6.5310 14 6 1.0384 4.6384 8.4529 15 7 0.8365 3.5628 9.1822 16 14 0.8265 6.3331 9.2093 17 1 -0.5786 6.7810 9.0346 18 1 1.1503 6.2730 10.6572 19 1 1.7389 7.2928 8.5374 20 6 4.6803 1.2398 0.7542 21 6 5.2809 2.4391 0.0180 22 6 5.3852 2.3462 1.5416 23 1 -1.0502 -0.0002 -0.0004 24 1 3.0093 0.1140 -1.0214 25 1 3.0098 -0.9403 0.4127 26 1 1.2192 1.3567 4.4965 27 1 2.9342 1.3590 4.9734 28 1 2.9273 3.8382 4.9887 29 1 1.2125 3.8366 4.5118 30 1 0.6369 2.6014 6.5830 31 1 2.3516 2.6027 7.0605 32 1 0.5779 3.6495 10.1131 33 1 5.1940 0.2830 0.6607 34 1 6.1897 2.2712 -0.5599 35 1 4.5897 3.1734 -0.3955 36 1 4.7626 3.0196 2.1307 37 1 6.3628 2.1171 1.9661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847658649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:50 Heat of formation + Delta-G solvation = -32.342913 kcal Electronic energy + Delta-G solvation = -17684.557271 eV Core-core repulsion = 14814.726106 eV Total energy + Delta-G solvation = -2869.831165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56875 -37.76805 -35.99398 -34.30827 -34.26357 -32.10075 -30.49789 -28.10898 -24.98186 -23.92893 -22.48835 -21.48926 -20.45092 -19.80662 -18.28346 -17.59888 -16.56377 -16.42097 -15.65703 -15.35346 -14.81221 -14.41760 -14.00011 -13.82642 -13.36728 -13.28944 -12.44364 -12.26181 -12.01902 -11.84064 -11.64254 -11.37645 -10.82730 -10.71972 -10.67631 -10.64524 -10.55733 -10.45242 -10.31397 -10.14930 -9.96686 -9.72638 -9.38199 -9.08284 -8.33661 -5.99079 -4.00936 2.51533 2.61259 2.71293 2.83566 3.34096 3.40075 3.44501 3.71443 4.09779 4.47890 4.52798 4.66681 4.80969 4.85002 4.98367 5.11422 5.23574 5.37078 5.48954 5.51556 5.59044 5.64349 5.71690 5.78983 5.87747 5.94553 6.09363 6.17981 6.63362 6.65964 6.83317 7.08662 7.50443 7.67649 7.79495 8.00723 8.07289 8.43582 9.05813 9.63131 11.12410 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028233 B = 0.004093 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.495929 B = 6839.289773 C = 7425.506534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C -0.002 4.002 4 C 0.121 3.879 5 H 0.088 0.912 6 O -0.351 6.351 7 C 0.462 3.538 8 O -0.508 6.508 9 C -0.113 4.113 10 C -0.098 4.098 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.180 4.180 21 C -0.167 4.167 22 C -0.178 4.178 23 H 0.218 0.782 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -8.394 -18.777 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C -0.039 4.039 4 C 0.066 3.934 5 H 0.106 0.894 6 O -0.268 6.268 7 C 0.307 3.693 8 O -0.395 6.395 9 C -0.150 4.150 10 C -0.136 4.136 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.198 4.198 21 C -0.204 4.204 22 C -0.214 4.214 23 H 0.235 0.765 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.781 -8.123 -18.777 21.259 hybrid contribution -0.301 0.883 0.422 1.024 sum 5.479 -7.240 -18.354 20.477 Atomic orbital electron populations 1.24934 0.95995 1.00020 1.00612 1.22860 0.94357 1.01203 1.00733 1.18788 0.85397 0.99364 1.00318 1.22134 0.92144 0.99399 0.79703 0.89412 1.86624 1.79183 1.37593 1.23418 1.24369 0.72601 0.82239 0.90129 1.90589 1.47770 1.27590 1.73579 1.21695 1.03731 1.03311 0.86278 1.21565 1.01664 0.91492 0.98888 1.19127 0.96714 0.97388 0.88396 1.21236 1.46216 0.92663 0.95660 0.92560 1.25015 0.95471 0.96660 0.97291 1.69962 1.47640 1.28009 1.07974 0.86583 0.78465 0.84585 0.78329 1.20662 1.21231 1.19840 1.22644 0.93947 0.95294 1.07928 1.22965 1.02661 0.99425 0.95332 1.23214 1.02313 1.01303 0.94618 0.76548 0.87541 0.88327 0.88235 0.88129 0.92455 0.92504 0.96397 0.96356 0.93008 0.86857 0.88476 0.88519 0.87017 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.19 -2.26 13.10 -37.12 -0.49 -2.74 16 3 C 0.00 -0.02 5.41 -29.52 -0.16 -0.18 16 4 C 0.12 1.46 2.22 -26.73 -0.06 1.40 16 5 H 0.09 1.20 6.91 -51.93 -0.36 0.84 16 6 O -0.35 -5.16 9.61 -39.25 -0.38 -5.53 16 7 C 0.46 7.76 7.18 36.00 0.26 8.02 16 8 O -0.51 -9.53 13.03 -18.75 -0.24 -9.78 16 9 C -0.11 -1.93 5.81 -27.89 -0.16 -2.09 16 10 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.18 -1.87 5.40 -90.61 -0.49 -2.36 16 21 C -0.17 -1.62 10.18 -26.73 -0.27 -1.89 16 22 C -0.18 -2.12 9.80 -26.73 -0.26 -2.38 16 23 H 0.22 1.70 7.80 -54.08 -0.42 1.28 16 24 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.11 0.97 8.11 -51.93 -0.42 0.54 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.11 1.67 5.37 -51.93 -0.28 1.39 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -32.29 322.75 -7.44 -39.72 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.66 Total: -0.55 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.73 Total: -19.37 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.62 Total: -15.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.29 -7.44 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847658649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds