Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47396 * 349.38857 * 3 2 1 5 5 H 1.09004 * 109.46706 * 55.00015 * 4 3 2 6 6 O 1.45196 * 109.47079 * 295.00302 * 4 3 2 7 7 C 1.34234 * 116.99938 * 149.99706 * 6 4 3 8 8 O 1.20822 * 119.99973 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00068 * 179.97438 * 7 6 4 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00411 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99549 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00388 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47339 * 119.99977 * 16 14 12 19 19 H 1.48509 * 109.47101 * 239.99886 * 16 14 12 20 20 C 1.52994 * 109.47046 * 174.99935 * 4 3 2 21 21 C 1.52994 * 117.50021 * 248.74737 * 20 4 3 22 22 C 1.53004 * 117.49708 * 180.08765 * 20 4 3 23 23 H 4.44656 * 5.63289 * 180.02562 * 4 1 2 24 24 H 1.09010 * 109.47086 * 229.39180 * 3 2 1 25 25 H 1.08997 * 109.47281 * 109.39168 * 3 2 1 26 26 H 1.09004 * 109.46932 * 300.00373 * 9 7 6 27 27 H 1.08997 * 109.47392 * 59.99712 * 9 7 6 28 28 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 29 29 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 30 30 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 31 31 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 32 32 H 0.96998 * 120.00131 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.55238 * 34.42266 * 20 4 3 34 34 H 1.09003 * 117.50041 * 0.02562 * 21 20 4 35 35 H 1.09001 * 117.50068 * 145.02380 * 21 20 4 36 36 H 1.09004 * 117.50146 * 214.98158 * 22 20 4 37 37 H 1.09000 * 117.49877 * 359.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4169 0.2656 5 1 2.7224 -2.1019 -0.4626 6 8 2.7728 -1.8267 1.6046 7 6 2.5642 -3.1376 1.8044 8 8 2.6986 -3.9168 0.8909 9 6 2.1637 -3.6376 3.1685 10 6 1.9914 -5.1571 3.1244 11 6 1.5853 -5.6648 4.5095 12 6 1.4150 -7.1615 4.4658 13 1 1.5802 -7.6971 3.5428 14 6 1.0482 -7.8470 5.6045 15 7 0.8474 -7.1949 6.7287 16 14 0.8377 -9.7023 5.5506 17 1 1.1204 -10.1930 4.1778 18 1 1.7809 -10.3355 6.5070 19 1 -0.5561 -10.0535 5.9240 20 6 4.6815 -1.4411 0.1424 21 6 5.2826 -2.2011 -1.0416 22 6 5.3877 -2.7789 0.3720 23 1 -1.0498 -0.0004 -0.0001 24 1 3.0091 0.6698 0.7803 25 1 3.0092 0.3420 -0.9693 26 1 2.9381 -3.3809 3.8914 27 1 1.2228 -3.1733 3.4638 28 1 1.2171 -5.4142 2.4015 29 1 2.9325 -5.6211 2.8293 30 1 2.3599 -5.4077 5.2321 31 1 0.6443 -5.2008 4.8049 32 1 0.5890 -7.6771 7.5297 33 1 5.1943 -0.5380 0.4734 34 1 4.5917 -2.6836 -1.7330 35 1 6.1911 -1.7983 -1.4894 36 1 6.3652 -2.7559 0.8537 37 1 4.7659 -3.6416 0.6113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847658651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = -32.372834 kcal Electronic energy + Delta-G solvation = -17684.586020 eV Core-core repulsion = 14814.753558 eV Total energy + Delta-G solvation = -2869.832463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56855 -37.76679 -35.99176 -34.30889 -34.26413 -32.10204 -30.49707 -28.11003 -24.98212 -23.93018 -22.49185 -21.48949 -20.45073 -19.80704 -18.28516 -17.59912 -16.56369 -16.42273 -15.65911 -15.35265 -14.81272 -14.41352 -14.00045 -13.82711 -13.36721 -13.28934 -12.44746 -12.26605 -12.02001 -11.83789 -11.64351 -11.37832 -10.84531 -10.71723 -10.67237 -10.64587 -10.54036 -10.45298 -10.31365 -10.14833 -9.96641 -9.72962 -9.38578 -9.06933 -8.34163 -5.99294 -4.01111 2.51500 2.61191 2.71204 2.83555 3.32865 3.40278 3.45615 3.71350 4.09829 4.47828 4.52820 4.66674 4.80850 4.84895 4.98374 5.11387 5.23566 5.36951 5.48941 5.51567 5.59016 5.64302 5.71680 5.79005 5.87849 5.94528 6.09335 6.17963 6.63279 6.65913 6.83277 7.08597 7.50404 7.67765 7.79362 8.00612 8.07253 8.43487 9.05922 9.63086 11.12216 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028236 B = 0.004093 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.387280 B = 6839.721107 C = 7425.631543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C -0.002 4.002 4 C 0.121 3.879 5 H 0.088 0.912 6 O -0.351 6.351 7 C 0.462 3.538 8 O -0.508 6.508 9 C -0.113 4.113 10 C -0.098 4.098 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.180 4.180 21 C -0.167 4.167 22 C -0.178 4.178 23 H 0.218 0.782 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 15.722 -13.295 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C -0.039 4.039 4 C 0.066 3.934 5 H 0.106 0.894 6 O -0.268 6.268 7 C 0.307 3.693 8 O -0.395 6.395 9 C -0.150 4.150 10 C -0.136 4.136 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.198 4.198 21 C -0.204 4.204 22 C -0.215 4.215 23 H 0.234 0.766 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.756 15.477 -13.419 21.277 hybrid contribution -0.294 -0.976 0.014 1.020 sum 5.461 14.500 -13.405 20.489 Atomic orbital electron populations 1.24929 0.95992 0.99731 1.00908 1.22859 0.94356 1.01299 1.00633 1.18788 0.85395 0.95897 1.03794 1.22134 0.92141 0.95504 0.83603 0.89411 1.86626 1.79196 1.27630 1.33368 1.24371 0.72599 0.79879 0.92491 1.90589 1.47742 1.56323 1.44867 1.21693 1.03743 0.99939 0.89640 1.21565 1.01673 0.88842 1.01527 1.19133 0.96731 0.95939 0.89863 1.21274 1.46119 0.92502 0.95802 0.92500 1.25015 0.95478 0.98441 0.95524 1.69970 1.47760 1.35539 1.00314 0.86535 0.77681 0.85705 0.78099 1.19692 1.21007 1.21019 1.22641 0.93939 0.97715 1.05504 1.22976 1.02662 1.03343 0.91409 1.23223 1.02304 0.96937 0.98987 0.76556 0.88326 0.87541 0.88128 0.88238 0.92498 0.92459 0.96355 0.96386 0.93064 0.86860 0.88516 0.88476 0.88622 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.19 -2.26 13.10 -37.13 -0.49 -2.74 16 3 C 0.00 -0.02 5.41 -29.52 -0.16 -0.18 16 4 C 0.12 1.46 2.22 -26.73 -0.06 1.40 16 5 H 0.09 1.20 6.91 -51.93 -0.36 0.84 16 6 O -0.35 -5.16 9.61 -39.27 -0.38 -5.53 16 7 C 0.46 7.75 7.18 36.01 0.26 8.01 16 8 O -0.51 -9.53 13.03 -18.75 -0.24 -9.78 16 9 C -0.11 -1.93 5.81 -27.89 -0.16 -2.09 16 10 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.18 -1.87 5.40 -90.62 -0.49 -2.35 16 21 C -0.17 -1.62 10.18 -26.70 -0.27 -1.89 16 22 C -0.18 -2.12 9.80 -26.69 -0.26 -2.38 16 23 H 0.22 1.70 7.80 -54.10 -0.42 1.28 16 24 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.11 0.97 8.11 -51.93 -0.42 0.54 16 34 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 1.67 5.37 -51.93 -0.28 1.39 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -32.31 322.75 -7.44 -39.74 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.66 Total: -0.59 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.73 Total: -19.36 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.62 Total: -15.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.31 -7.44 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847658651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.371 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds