Wall clock time and date at job start Mon Mar 30 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47396 * 349.38857 * 3 2 1 5 5 H 1.09004 * 109.46706 * 55.00015 * 4 3 2 6 6 O 1.45196 * 109.47079 * 295.00302 * 4 3 2 7 7 C 1.34234 * 116.99938 * 149.99706 * 6 4 3 8 8 O 1.20822 * 119.99973 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00068 * 179.97438 * 7 6 4 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00411 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99549 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00388 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47339 * 119.99977 * 16 14 12 19 19 H 1.48509 * 109.47101 * 239.99886 * 16 14 12 20 20 C 1.52994 * 109.47046 * 174.99935 * 4 3 2 21 21 C 1.52994 * 117.50021 * 248.74737 * 20 4 3 22 22 C 1.53004 * 117.49708 * 180.08765 * 20 4 3 23 23 H 4.44656 * 5.63289 * 180.02562 * 4 1 2 24 24 H 1.09010 * 109.47086 * 229.39180 * 3 2 1 25 25 H 1.08997 * 109.47281 * 109.39168 * 3 2 1 26 26 H 1.09004 * 109.46932 * 300.00373 * 9 7 6 27 27 H 1.08997 * 109.47392 * 59.99712 * 9 7 6 28 28 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 29 29 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 30 30 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 31 31 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 32 32 H 0.96998 * 120.00131 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.55238 * 34.42266 * 20 4 3 34 34 H 1.09003 * 117.50041 * 0.02562 * 21 20 4 35 35 H 1.09001 * 117.50068 * 145.02380 * 21 20 4 36 36 H 1.09004 * 117.50146 * 214.98158 * 22 20 4 37 37 H 1.09000 * 117.49877 * 359.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4169 0.2656 5 1 2.7224 -2.1019 -0.4626 6 8 2.7728 -1.8267 1.6046 7 6 2.5642 -3.1376 1.8044 8 8 2.6986 -3.9168 0.8909 9 6 2.1637 -3.6376 3.1685 10 6 1.9914 -5.1571 3.1244 11 6 1.5853 -5.6648 4.5095 12 6 1.4150 -7.1615 4.4658 13 1 1.5802 -7.6971 3.5428 14 6 1.0482 -7.8470 5.6045 15 7 0.8474 -7.1949 6.7287 16 14 0.8377 -9.7023 5.5506 17 1 1.1204 -10.1930 4.1778 18 1 1.7809 -10.3355 6.5070 19 1 -0.5561 -10.0535 5.9240 20 6 4.6815 -1.4411 0.1424 21 6 5.2826 -2.2011 -1.0416 22 6 5.3877 -2.7789 0.3720 23 1 -1.0498 -0.0004 -0.0001 24 1 3.0091 0.6698 0.7803 25 1 3.0092 0.3420 -0.9693 26 1 2.9381 -3.3809 3.8914 27 1 1.2228 -3.1733 3.4638 28 1 1.2171 -5.4142 2.4015 29 1 2.9325 -5.6211 2.8293 30 1 2.3599 -5.4077 5.2321 31 1 0.6443 -5.2008 4.8049 32 1 0.5890 -7.6771 7.5297 33 1 5.1943 -0.5380 0.4734 34 1 4.5917 -2.6836 -1.7330 35 1 6.1911 -1.7983 -1.4894 36 1 6.3652 -2.7559 0.8537 37 1 4.7659 -3.6416 0.6113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847658651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:52 Heat of formation + Delta-G solvation = -48.944724 kcal Electronic energy + Delta-G solvation = -17685.304632 eV Core-core repulsion = 14814.753558 eV Total energy + Delta-G solvation = -2870.551074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78943 -38.84020 -37.08038 -36.18342 -35.14914 -34.09719 -31.42619 -29.92207 -26.39824 -25.33393 -23.35065 -23.00488 -21.61044 -21.27779 -19.09460 -18.92093 -18.44072 -17.74277 -17.06658 -16.44642 -16.27822 -15.93194 -15.13897 -14.91459 -14.51653 -14.30970 -14.20935 -13.83702 -13.46473 -13.21809 -12.96570 -12.69837 -12.54977 -12.42219 -12.40005 -11.75259 -11.61531 -11.58183 -11.49498 -11.45371 -11.27518 -11.14714 -11.04701 -10.89875 -10.55496 -8.20857 -6.31049 1.19236 1.39770 1.40134 1.53354 1.58814 1.81869 1.90023 2.41425 2.83828 3.12598 3.31103 3.66824 3.79706 3.83022 3.96429 4.04990 4.13887 4.15974 4.28644 4.44136 4.58500 4.74857 4.79264 4.82160 4.87588 4.95389 5.02147 5.10598 5.12420 5.17729 5.21933 5.46377 5.52656 5.71023 5.84738 6.25080 6.67305 6.77676 6.84577 7.37876 8.91039 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028236 B = 0.004093 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.387280 B = 6839.721107 C = 7425.631543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.220 4.220 3 C 0.002 3.998 4 C 0.115 3.885 5 H 0.067 0.933 6 O -0.349 6.349 7 C 0.469 3.531 8 O -0.532 6.532 9 C -0.107 4.107 10 C -0.083 4.083 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.276 1.276 20 C -0.172 4.172 21 C -0.150 4.150 22 C -0.203 4.203 23 H 0.239 0.761 24 H 0.115 0.885 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.003 0.997 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 16.632 -14.097 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.220 4.220 3 C -0.034 4.034 4 C 0.061 3.939 5 H 0.085 0.915 6 O -0.266 6.266 7 C 0.314 3.686 8 O -0.422 6.422 9 C -0.144 4.144 10 C -0.121 4.121 11 C -0.012 4.012 12 C -0.584 4.584 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.240 4.240 23 H 0.256 0.744 24 H 0.133 0.867 25 H 0.155 0.845 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.404 16.410 -14.228 22.644 hybrid contribution -0.512 -1.214 0.240 1.340 sum 5.892 15.195 -13.989 21.478 Atomic orbital electron populations 1.25705 0.97083 0.99127 1.00654 1.23558 0.95560 1.01872 1.01054 1.18946 0.84268 0.94252 1.05956 1.22430 0.93494 0.96498 0.81510 0.91511 1.86588 1.78860 1.25983 1.35204 1.24068 0.72188 0.80520 0.91792 1.90590 1.48917 1.57142 1.45575 1.21502 1.05190 0.97001 0.90749 1.21245 1.00607 0.91871 0.98372 1.19017 0.95411 0.94851 0.91927 1.21683 1.46583 0.94190 0.95966 0.92837 1.25901 0.94892 1.03592 0.95041 1.70074 1.48247 1.37621 1.01007 0.85441 0.77998 0.79485 0.78383 1.19122 1.20089 1.20148 1.22729 0.92667 0.97878 1.05734 1.23056 1.03328 1.02021 0.90310 1.23162 1.02619 0.96708 1.01476 0.74434 0.86692 0.84545 0.86461 0.86879 0.93541 0.93278 0.97818 0.97978 0.92644 0.84105 0.89365 0.85665 0.87440 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.40 19.25 74.32 1.43 -2.97 16 2 C -0.22 -4.89 13.10 31.12 0.41 -4.48 16 3 C 0.00 0.03 5.41 28.79 0.16 0.18 16 4 C 0.12 2.62 2.22 30.59 0.07 2.69 16 5 H 0.07 1.81 6.91 -2.39 -0.02 1.80 16 6 O -0.35 -9.96 9.61 -51.46 -0.49 -10.46 16 7 C 0.47 15.74 7.18 71.24 0.51 16.25 16 8 O -0.53 -20.44 13.03 21.98 0.29 -20.16 16 9 C -0.11 -3.66 5.81 29.85 0.17 -3.48 16 10 C -0.08 -3.61 4.44 30.59 0.14 -3.48 16 11 C 0.02 1.32 4.97 29.85 0.15 1.47 16 12 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 16 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 C -0.17 -3.20 5.40 -10.80 -0.06 -3.26 16 21 C -0.15 -2.62 10.18 30.62 0.31 -2.30 16 22 C -0.20 -4.67 9.80 30.62 0.30 -4.37 16 23 H 0.24 3.42 7.80 -4.43 -0.03 3.39 16 24 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16 27 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.05 2.08 8.10 -2.38 -0.02 2.06 16 29 H 0.05 2.18 8.10 -2.38 -0.02 2.16 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.14 1.87 8.11 -2.39 -0.02 1.85 16 34 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 2.36 5.37 -2.39 -0.01 2.35 16 Total: -1.00 -70.20 322.75 7.41 -62.79 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.03 Total: 11.61 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 4.28 Total: -34.71 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.06 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.21 Total: -30.61 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.20 7.41 -62.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847658651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -70.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds