Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46999 * 115.18268 * 3 2 1 5 5 C 1.52998 * 109.47015 * 355.17881 * 3 2 1 6 6 C 1.53003 * 109.46981 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47115 * 59.99605 * 6 5 3 8 8 C 1.53001 * 109.47020 * 300.00229 * 7 6 5 9 9 C 1.52997 * 109.46497 * 235.17892 * 3 2 1 10 10 H 1.08999 * 109.47431 * 60.00036 * 9 3 2 11 11 O 1.45201 * 109.47206 * 299.99792 * 9 3 2 12 12 C 1.34232 * 116.99977 * 150.00328 * 11 9 3 13 13 O 1.20830 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00240 * 179.97438 * 12 11 9 15 15 H 1.09001 * 109.47188 * 300.00220 * 14 12 11 16 16 C 1.52995 * 109.46614 * 60.00033 * 14 12 11 17 17 C 1.50698 * 109.47166 * 180.02562 * 14 12 11 18 18 H 1.07997 * 119.99734 * 269.20275 * 17 14 12 19 19 C 1.37883 * 120.00034 * 89.20399 * 17 14 12 20 20 N 1.31516 * 119.99886 * 353.26948 * 19 17 14 21 21 Si 1.86793 * 119.99940 * 173.26735 * 19 17 14 22 22 H 1.48499 * 109.46856 * 90.00484 * 21 19 17 23 23 H 1.48497 * 109.47578 * 330.00217 * 21 19 17 24 24 H 1.48500 * 109.47223 * 210.00014 * 21 19 17 25 25 H 4.18746 * 15.03956 * 0.02562 * 4 2 1 26 26 H 1.08993 * 109.47254 * 60.00116 * 5 3 2 27 27 H 1.09008 * 109.47217 * 299.99784 * 5 3 2 28 28 H 1.09008 * 109.46593 * 299.99706 * 6 5 3 29 29 H 1.08996 * 109.47496 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.46560 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.46924 * 60.00716 * 7 6 5 32 32 H 1.08999 * 109.47176 * 300.00025 * 8 7 6 33 33 H 1.09005 * 109.46403 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47634 * 56.17794 * 16 14 12 35 35 H 1.09006 * 109.46784 * 176.17099 * 16 14 12 36 36 H 1.09000 * 109.47436 * 296.17267 * 16 14 12 37 37 H 0.97001 * 119.99999 * 354.49189 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.4381 -0.9300 5 6 3.1567 -1.4365 0.1212 6 6 4.6867 -1.4358 0.1219 7 6 5.1958 -0.6119 1.3064 8 6 4.6851 0.8252 1.1851 9 6 3.1556 0.8246 1.1842 10 1 2.7924 0.3872 2.1142 11 8 2.6709 2.1885 1.0691 12 6 2.4674 2.8614 2.2126 13 8 2.6874 2.3286 3.2745 14 6 1.9657 4.2819 2.1719 15 1 2.6749 4.9022 1.6240 16 6 0.6057 4.3224 1.4721 17 6 1.8234 4.8048 3.5781 18 1 0.8866 4.6929 4.1036 19 6 2.8893 5.4262 4.1937 20 7 4.0667 5.4459 3.6080 21 14 2.6610 6.2400 5.8594 22 1 2.9358 5.2530 6.9343 23 1 1.2651 6.7311 5.9834 24 1 3.6007 7.3830 5.9849 25 1 -1.0500 0.0003 0.0006 26 1 2.7937 -2.0235 -0.7224 27 1 2.7936 -1.8739 1.0513 28 1 5.0502 -0.9982 -0.8080 29 1 5.0506 -2.4596 0.2078 30 1 6.2859 -0.6110 1.3065 31 1 4.8324 -1.0494 2.2362 32 1 5.0486 1.2627 0.2552 33 1 5.0483 1.4122 2.0287 34 1 -0.0848 3.6493 1.9805 35 1 0.2115 5.3382 1.5028 36 1 0.7214 4.0086 0.4347 37 1 4.2060 4.9560 2.7824 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851536240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = -67.983206 kcal Electronic energy + Delta-G solvation = -18782.210113 eV Core-core repulsion = 15910.833468 eV Total energy + Delta-G solvation = -2871.376644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87499 -38.04464 -35.19137 -33.87370 -33.44111 -30.98656 -30.18990 -29.49660 -24.69343 -23.79698 -23.16280 -22.01147 -20.01022 -19.71842 -18.13256 -16.84127 -16.56057 -15.67132 -15.25178 -14.67534 -14.34285 -13.91297 -13.76415 -13.61462 -13.37905 -12.83342 -12.58390 -12.31158 -11.85298 -11.52603 -11.32104 -11.10526 -11.00271 -10.86565 -10.77426 -10.72281 -10.57073 -10.14727 -10.02604 -9.95539 -9.86892 -9.56559 -9.01300 -8.72683 -8.46250 -6.48130 -4.20663 2.97551 2.99538 3.42137 3.45454 3.55198 3.62392 3.66201 4.33950 4.49751 4.72927 4.89528 4.97008 5.17501 5.22074 5.33567 5.39411 5.44263 5.45128 5.68103 5.80974 5.92159 6.01142 6.05764 6.08043 6.21655 6.22028 6.26698 6.35247 6.41892 6.44508 6.63707 7.02696 7.09981 7.50720 7.80000 7.95344 8.33711 8.70603 9.13140 9.51656 10.89687 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.006416 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.602181 B = 4363.037015 C = 5024.536317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.026 3.974 4 H 0.098 0.902 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.135 4.135 9 C 0.093 3.907 10 H 0.079 0.921 11 O -0.366 6.366 12 C 0.445 3.555 13 O -0.503 6.503 14 C 0.034 3.966 15 H 0.067 0.933 16 C -0.122 4.122 17 C -0.573 4.573 18 H 0.058 0.942 19 C 0.028 3.972 20 N -0.896 5.896 21 Si 1.075 2.925 22 H -0.286 1.286 23 H -0.286 1.286 24 H -0.282 1.282 25 H 0.215 0.785 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -11.508 -8.545 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.172 4.172 3 C 0.008 3.992 4 H 0.116 0.884 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.037 3.963 10 H 0.097 0.903 11 O -0.285 6.285 12 C 0.288 3.712 13 O -0.388 6.388 14 C 0.015 3.985 15 H 0.085 0.915 16 C -0.180 4.180 17 C -0.610 4.610 18 H 0.076 0.924 19 C -0.178 4.178 20 N -0.530 5.530 21 Si 0.902 3.098 22 H -0.213 1.213 23 H -0.212 1.212 24 H -0.208 1.208 25 H 0.232 0.768 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.129 -10.786 -7.065 12.894 hybrid contribution -0.905 -1.159 -1.009 1.783 sum -1.034 -11.945 -8.074 14.455 Atomic orbital electron populations 1.24793 0.95806 1.01141 1.00949 1.22825 0.94068 0.99958 1.00334 1.18414 0.84990 0.96103 0.99687 0.88361 1.21534 0.95863 0.94171 1.02865 1.21589 0.94783 1.00293 0.99092 1.21514 1.00604 0.94751 0.98608 1.21920 0.94417 0.97428 1.03464 1.22401 0.93568 0.82171 0.98121 0.90298 1.86732 1.77615 1.25700 1.38418 1.26480 0.73125 0.90682 0.80901 1.90478 1.47475 1.69066 1.31781 1.19033 0.94777 0.85111 0.99616 0.91516 1.21612 0.97106 1.01270 0.98027 1.21712 1.00900 1.39984 0.98416 0.92391 1.25986 0.92266 0.95593 1.03981 1.70781 1.23211 1.39878 1.19144 0.83472 0.75505 0.76412 0.74402 1.21292 1.21160 1.20765 0.76769 0.90977 0.91322 0.91497 0.91443 0.91327 0.91646 0.91017 0.90679 0.94041 0.92252 0.94180 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.05 19.25 29.55 0.57 -2.48 16 2 C -0.17 -2.73 12.20 -37.12 -0.45 -3.18 16 3 C 0.03 0.38 2.32 -93.41 -0.22 0.16 16 4 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 5 C -0.11 -1.21 5.16 -26.73 -0.14 -1.35 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 7 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 8 C -0.13 -2.15 5.56 -26.75 -0.15 -2.30 16 9 C 0.09 1.68 1.85 -26.75 -0.05 1.63 16 10 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 11 O -0.37 -7.99 9.42 -39.26 -0.37 -8.36 16 12 C 0.45 11.35 7.04 36.01 0.25 11.61 16 13 O -0.50 -14.25 15.25 -18.75 -0.29 -14.54 16 14 C 0.03 0.88 2.39 -92.93 -0.22 0.66 16 15 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 16 C -0.12 -2.64 9.10 37.15 0.34 -2.30 16 17 C -0.57 -16.36 7.55 -34.44 -0.26 -16.62 16 18 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 19 C 0.03 0.80 5.45 -17.82 -0.10 0.71 16 20 N -0.90 -27.18 13.55 55.43 0.75 -26.43 16 21 Si 1.07 25.60 29.91 -169.99 -5.08 20.52 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.22 2.32 7.80 -54.09 -0.42 1.90 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.27 8.11 6.74 -40.82 -0.28 7.83 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -32.84 313.33 -6.72 -39.55 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.71 Total: 0.97 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -0.74 Total: -16.44 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.75 Total: -26.43 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.66 Total: -22.89 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.84 -6.72 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.431 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds