Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46999 * 115.18268 * 3 2 1 5 5 C 1.52998 * 109.47015 * 355.17881 * 3 2 1 6 6 C 1.53003 * 109.46981 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47115 * 59.99605 * 6 5 3 8 8 C 1.53001 * 109.47020 * 300.00229 * 7 6 5 9 9 C 1.52997 * 109.46497 * 235.17892 * 3 2 1 10 10 H 1.08999 * 109.47431 * 60.00036 * 9 3 2 11 11 O 1.45201 * 109.47206 * 299.99792 * 9 3 2 12 12 C 1.34232 * 116.99977 * 150.00328 * 11 9 3 13 13 O 1.20830 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00240 * 179.97438 * 12 11 9 15 15 H 1.09001 * 109.47188 * 300.00220 * 14 12 11 16 16 C 1.52995 * 109.46614 * 60.00033 * 14 12 11 17 17 C 1.50698 * 109.47166 * 180.02562 * 14 12 11 18 18 H 1.07997 * 119.99734 * 269.20275 * 17 14 12 19 19 C 1.37883 * 120.00034 * 89.20399 * 17 14 12 20 20 N 1.31516 * 119.99886 * 353.26948 * 19 17 14 21 21 Si 1.86793 * 119.99940 * 173.26735 * 19 17 14 22 22 H 1.48499 * 109.46856 * 90.00484 * 21 19 17 23 23 H 1.48497 * 109.47578 * 330.00217 * 21 19 17 24 24 H 1.48500 * 109.47223 * 210.00014 * 21 19 17 25 25 H 4.18746 * 15.03956 * 0.02562 * 4 2 1 26 26 H 1.08993 * 109.47254 * 60.00116 * 5 3 2 27 27 H 1.09008 * 109.47217 * 299.99784 * 5 3 2 28 28 H 1.09008 * 109.46593 * 299.99706 * 6 5 3 29 29 H 1.08996 * 109.47496 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.46560 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.46924 * 60.00716 * 7 6 5 32 32 H 1.08999 * 109.47176 * 300.00025 * 8 7 6 33 33 H 1.09005 * 109.46403 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47634 * 56.17794 * 16 14 12 35 35 H 1.09006 * 109.46784 * 176.17099 * 16 14 12 36 36 H 1.09000 * 109.47436 * 296.17267 * 16 14 12 37 37 H 0.97001 * 119.99999 * 354.49189 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.4381 -0.9300 5 6 3.1567 -1.4365 0.1212 6 6 4.6867 -1.4358 0.1219 7 6 5.1958 -0.6119 1.3064 8 6 4.6851 0.8252 1.1851 9 6 3.1556 0.8246 1.1842 10 1 2.7924 0.3872 2.1142 11 8 2.6709 2.1885 1.0691 12 6 2.4674 2.8614 2.2126 13 8 2.6874 2.3286 3.2745 14 6 1.9657 4.2819 2.1719 15 1 2.6749 4.9022 1.6240 16 6 0.6057 4.3224 1.4721 17 6 1.8234 4.8048 3.5781 18 1 0.8866 4.6929 4.1036 19 6 2.8893 5.4262 4.1937 20 7 4.0667 5.4459 3.6080 21 14 2.6610 6.2400 5.8594 22 1 2.9358 5.2530 6.9343 23 1 1.2651 6.7311 5.9834 24 1 3.6007 7.3830 5.9849 25 1 -1.0500 0.0003 0.0006 26 1 2.7937 -2.0235 -0.7224 27 1 2.7936 -1.8739 1.0513 28 1 5.0502 -0.9982 -0.8080 29 1 5.0506 -2.4596 0.2078 30 1 6.2859 -0.6110 1.3065 31 1 4.8324 -1.0494 2.2362 32 1 5.0486 1.2627 0.2552 33 1 5.0483 1.4122 2.0287 34 1 -0.0848 3.6493 1.9805 35 1 0.2115 5.3382 1.5028 36 1 0.7214 4.0086 0.4347 37 1 4.2060 4.9560 2.7824 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851536240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = -85.970652 kcal Electronic energy + Delta-G solvation = -18782.990107 eV Core-core repulsion = 15910.833468 eV Total energy + Delta-G solvation = -2872.156638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61068 -39.49964 -36.97386 -35.98980 -34.56833 -32.99449 -31.34180 -30.73093 -26.79334 -25.58023 -24.26656 -23.50385 -21.64964 -21.07987 -19.36216 -18.88241 -18.44437 -17.36611 -16.88631 -15.98239 -15.76133 -15.64583 -15.37124 -15.12304 -14.72385 -14.26334 -13.85193 -13.80886 -13.70715 -13.11679 -12.90633 -12.70323 -12.65103 -12.45792 -12.11794 -12.01142 -11.86013 -11.84494 -11.63425 -11.39291 -11.23051 -10.99969 -10.91402 -10.80334 -10.59873 -8.76487 -6.49373 1.50170 1.51361 1.56779 1.75715 1.77599 1.82826 1.97923 2.52634 3.13860 3.25723 3.60012 3.84113 3.86913 3.93554 4.10277 4.15178 4.31078 4.34192 4.36885 4.39554 4.54249 4.72529 4.73566 4.76955 4.93148 4.99862 5.06915 5.09065 5.13659 5.20566 5.21423 5.27149 5.39234 5.60063 5.81476 6.05588 6.41973 6.65069 7.13203 7.31153 8.61698 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.006416 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.602181 B = 4363.037015 C = 5024.536317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.216 4.216 3 C 0.031 3.969 4 H 0.110 0.890 5 C -0.101 4.101 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.133 4.133 9 C 0.087 3.913 10 H 0.051 0.949 11 O -0.364 6.364 12 C 0.452 3.548 13 O -0.541 6.541 14 C 0.023 3.977 15 H 0.053 0.947 16 C -0.111 4.111 17 C -0.587 4.587 18 H 0.052 0.948 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.118 2.882 22 H -0.285 1.285 23 H -0.261 1.261 24 H -0.274 1.274 25 H 0.246 0.754 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -12.688 -9.704 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C 0.013 3.987 4 H 0.128 0.872 5 C -0.139 4.139 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.170 4.170 9 C 0.032 3.968 10 H 0.070 0.930 11 O -0.282 6.282 12 C 0.296 3.704 13 O -0.430 6.430 14 C 0.003 3.997 15 H 0.071 0.929 16 C -0.169 4.169 17 C -0.624 4.624 18 H 0.071 0.929 19 C -0.222 4.222 20 N -0.557 5.557 21 Si 0.939 3.061 22 H -0.211 1.211 23 H -0.185 1.185 24 H -0.199 1.199 25 H 0.262 0.738 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.711 -11.978 -8.271 14.574 hybrid contribution -0.775 -0.874 -0.732 1.378 sum -1.486 -12.852 -9.003 15.762 Atomic orbital electron populations 1.25674 0.96821 0.99823 0.99369 1.23363 0.95083 1.01316 1.01795 1.18501 0.84801 0.97411 0.98002 0.87205 1.21572 0.96823 0.91929 1.03560 1.21594 0.93591 1.01458 0.98351 1.21531 1.01695 0.92203 0.99612 1.21931 0.92906 0.99879 1.02321 1.22789 0.94998 0.80016 0.98961 0.93038 1.86642 1.77292 1.27870 1.36363 1.26123 0.72389 0.90804 0.81070 1.90451 1.49231 1.70084 1.33224 1.19092 0.96769 0.85008 0.98846 0.92918 1.21513 0.94462 1.02217 0.98684 1.22000 1.00603 1.40175 0.99615 0.92944 1.27428 0.91770 0.96087 1.06952 1.70908 1.24221 1.41232 1.19289 0.82950 0.76985 0.75864 0.70337 1.21113 1.18498 1.19946 0.73786 0.88462 0.92102 0.89957 0.88632 0.89458 0.92565 0.89683 0.94738 0.94025 0.90994 0.92021 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.44 19.25 74.32 1.43 -4.01 16 2 C -0.22 -6.57 12.20 31.13 0.38 -6.19 16 3 C 0.03 0.86 2.32 -12.60 -0.03 0.83 16 4 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 5 C -0.10 -2.06 5.16 30.59 0.16 -1.90 16 6 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 7 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 8 C -0.13 -4.30 5.56 30.58 0.17 -4.13 16 9 C 0.09 3.20 1.85 30.58 0.06 3.26 16 10 H 0.05 2.17 7.16 -2.39 -0.02 2.15 16 11 O -0.36 -16.20 9.42 -51.44 -0.48 -16.69 16 12 C 0.45 23.75 7.04 71.24 0.50 24.25 16 13 O -0.54 -32.01 15.25 21.95 0.33 -31.67 16 14 C 0.02 1.18 2.39 -12.29 -0.03 1.15 16 15 H 0.05 2.91 6.94 -2.39 -0.02 2.89 16 16 C -0.11 -4.72 9.10 71.98 0.66 -4.06 16 17 C -0.59 -34.08 7.55 25.60 0.19 -33.89 16 18 H 0.05 3.03 7.82 -2.91 -0.02 3.00 16 19 C -0.02 -1.34 5.45 84.66 0.46 -0.88 16 20 N -0.92 -57.41 13.55 21.45 0.29 -57.12 16 21 Si 1.12 51.67 29.91 68.60 2.05 53.72 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 H 0.25 4.60 7.80 -4.42 -0.03 4.57 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.25 16.04 6.74 -92.71 -0.62 15.41 16 Total: -1.00 -73.48 313.33 7.67 -65.81 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.17 Total: 15.68 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 4.31 Total: -29.73 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.29 Total: -57.12 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.15 Total: -48.36 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -73.48 7.67 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.160 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds