Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47522 * 318.37102 * 3 2 1 5 5 C 1.53007 * 109.47073 * 198.37045 * 3 2 1 6 6 C 1.52994 * 109.47000 * 299.99996 * 5 3 2 7 7 C 1.53005 * 109.47327 * 299.99795 * 6 5 3 8 8 C 1.53002 * 109.46627 * 60.00329 * 7 6 5 9 9 C 1.53000 * 109.47461 * 78.37043 * 3 2 1 10 10 H 1.08997 * 109.47552 * 179.97438 * 9 3 2 11 11 O 1.45196 * 109.47051 * 300.00187 * 9 3 2 12 12 C 1.34234 * 116.99938 * 209.99593 * 11 9 3 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 16 16 C 1.53002 * 109.47318 * 59.99727 * 14 12 11 17 17 C 1.50697 * 109.47266 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99865 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99925 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00389 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99821 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46850 * 59.99963 * 21 19 17 23 23 H 1.48498 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47393 * 300.00356 * 21 19 17 25 25 H 4.18745 * 15.03913 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.46828 * 60.00540 * 5 3 2 27 27 H 1.09002 * 109.47199 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47338 * 59.99847 * 6 5 3 29 29 H 1.09003 * 109.47089 * 180.02562 * 6 5 3 30 30 H 1.08994 * 109.46926 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.46954 * 300.00288 * 7 6 5 32 32 H 1.09001 * 109.46732 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47577 * 59.99800 * 8 7 6 34 34 H 1.08996 * 109.46989 * 300.00583 * 16 14 12 35 35 H 1.09002 * 109.46768 * 59.99928 * 16 14 12 36 36 H 1.08996 * 109.46948 * 180.02562 * 16 14 12 37 37 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0097 -0.7673 0.6827 5 6 3.1553 1.3699 0.4546 6 6 2.6448 2.4478 -0.5036 7 6 3.1550 2.1573 -1.9165 8 6 2.6456 0.7881 -2.3711 9 6 3.1562 -0.2899 -1.4129 10 1 4.2461 -0.2890 -1.4130 11 8 2.6727 -1.5893 -1.8443 12 6 3.4465 -2.2734 -2.7018 13 8 4.4932 -1.8022 -3.0789 14 6 3.0101 -3.6295 -3.1931 15 1 2.8970 -4.3043 -2.3446 16 6 1.6723 -3.5010 -3.9243 17 6 4.0481 -4.1798 -4.1369 18 1 4.9349 -3.6047 -4.3591 19 6 3.8657 -5.4173 -4.7168 20 7 2.7856 -6.1173 -4.4467 21 14 5.1520 -6.0990 -5.8873 22 1 6.4507 -6.2232 -5.1777 23 1 4.7221 -7.4354 -6.3714 24 1 5.3058 -5.1801 -7.0436 25 1 -1.0500 -0.0003 0.0009 26 1 2.7920 1.5768 1.4612 27 1 4.2453 1.3703 0.4551 28 1 1.5548 2.4473 -0.5037 29 1 3.0081 3.4233 -0.1800 30 1 2.7909 2.9250 -2.5992 31 1 4.2450 2.1578 -1.9165 32 1 3.0094 0.5809 -3.3775 33 1 1.5556 0.7876 -2.3711 34 1 0.9218 -3.1031 -3.2413 35 1 1.7854 -2.8261 -4.7728 36 1 1.3565 -4.4819 -4.2793 37 1 2.6575 -6.9881 -4.8544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851536241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = -60.348201 kcal Electronic energy + Delta-G solvation = -18602.357841 eV Core-core repulsion = 15731.312276 eV Total energy + Delta-G solvation = -2871.045566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06058 -38.26903 -35.32717 -33.85201 -32.95525 -30.75897 -30.38138 -29.57383 -25.18260 -23.73355 -23.12646 -21.97894 -20.61123 -19.60121 -17.41473 -16.73292 -16.15633 -16.02778 -15.12118 -15.11121 -14.54162 -14.24560 -13.91617 -13.48966 -12.88264 -12.66278 -12.53784 -12.48785 -11.69313 -11.55943 -11.24335 -11.03645 -10.98223 -10.83908 -10.75232 -10.67305 -10.48790 -10.32093 -10.16801 -10.03990 -9.91113 -9.56688 -9.05106 -9.02460 -8.42442 -6.08276 -4.13768 3.00306 3.01821 3.33028 3.35871 3.36530 3.39225 3.54990 4.35960 4.42895 4.70792 4.84119 4.88774 5.12230 5.16102 5.24869 5.35750 5.42549 5.53201 5.59977 5.71063 5.88444 5.90782 6.04694 6.12076 6.18363 6.25448 6.29129 6.44766 6.69617 6.91210 6.92298 7.29441 7.47021 7.76555 7.82207 7.96947 8.17023 8.88863 8.96805 9.51548 10.99093 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.005342 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.448148 B = 5240.637762 C = 5622.860820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.023 3.977 4 H 0.098 0.902 5 C -0.107 4.107 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.135 4.135 9 C 0.093 3.907 10 H 0.088 0.912 11 O -0.356 6.356 12 C 0.464 3.536 13 O -0.518 6.518 14 C 0.057 3.943 15 H 0.063 0.937 16 C -0.132 4.132 17 C -0.512 4.512 18 H 0.075 0.925 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.214 0.786 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 13.897 8.520 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.158 4.158 3 C 0.005 3.995 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.173 4.173 9 C 0.038 3.962 10 H 0.106 0.894 11 O -0.275 6.275 12 C 0.309 3.691 13 O -0.405 6.405 14 C 0.039 3.961 15 H 0.080 0.920 16 C -0.190 4.190 17 C -0.550 4.550 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.231 0.769 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.114 0.886 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.665 13.890 8.367 16.433 hybrid contribution 0.496 -0.399 -0.663 0.919 sum -2.169 13.491 7.704 15.687 Atomic orbital electron populations 1.24730 0.95731 1.01593 1.01203 1.22554 0.93768 0.99584 0.99892 1.18456 0.85896 0.98732 0.96443 0.88423 1.21536 1.01066 0.92531 0.99350 1.21595 1.01329 0.98070 0.94956 1.21485 1.00978 0.96411 0.96369 1.21926 1.01883 0.93969 0.99487 1.22462 0.99487 0.82012 0.92276 0.89420 1.86727 1.51161 1.30117 1.59447 1.25345 0.81447 0.88250 0.74040 1.90474 1.24770 1.69842 1.55459 1.18738 0.96288 0.83865 0.97257 0.91959 1.21715 0.95352 1.03589 0.98340 1.21096 1.05338 1.02523 1.26074 0.90722 1.24935 0.95887 0.96476 0.96684 1.69872 1.26324 1.12842 1.44060 0.86439 0.81508 0.77813 0.80994 1.20095 1.21221 1.20116 0.76906 0.90916 0.90651 0.91547 0.91728 0.91564 0.91616 0.91097 0.90967 0.95813 0.95090 0.88633 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.81 19.25 29.55 0.57 -2.24 16 2 C -0.16 -2.25 9.70 -37.12 -0.36 -2.61 16 3 C 0.02 0.31 2.82 -93.40 -0.26 0.04 16 4 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.11 -1.10 5.43 -26.73 -0.15 -1.25 16 6 C -0.12 -1.23 5.70 -26.73 -0.15 -1.38 16 7 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 8 C -0.13 -2.03 5.34 -26.73 -0.14 -2.17 16 9 C 0.09 1.54 2.12 -26.73 -0.06 1.48 16 10 H 0.09 1.50 7.16 -51.93 -0.37 1.13 16 11 O -0.36 -7.36 9.40 -39.27 -0.37 -7.73 16 12 C 0.46 11.12 7.22 36.01 0.26 11.38 16 13 O -0.52 -13.26 14.68 -18.75 -0.28 -13.53 16 14 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 15 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 16 C -0.13 -3.22 8.90 37.16 0.33 -2.89 16 17 C -0.51 -14.56 8.37 -34.44 -0.29 -14.85 16 18 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.21 2.03 7.80 -54.09 -0.42 1.61 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.71 7.23 -51.93 -0.38 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.10 7.23 -51.93 -0.38 0.73 16 34 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -30.46 307.03 -6.74 -37.20 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.57 Total: 0.39 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.76 Total: -13.11 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.64 Total: -21.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.46 -6.74 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.150 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds