Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47522 * 318.37102 * 3 2 1 5 5 C 1.53007 * 109.47073 * 198.37045 * 3 2 1 6 6 C 1.52994 * 109.47000 * 299.99996 * 5 3 2 7 7 C 1.53005 * 109.47327 * 299.99795 * 6 5 3 8 8 C 1.53002 * 109.46627 * 60.00329 * 7 6 5 9 9 C 1.53000 * 109.47461 * 78.37043 * 3 2 1 10 10 H 1.08997 * 109.47552 * 179.97438 * 9 3 2 11 11 O 1.45196 * 109.47051 * 300.00187 * 9 3 2 12 12 C 1.34234 * 116.99938 * 209.99593 * 11 9 3 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 16 16 C 1.53002 * 109.47318 * 59.99727 * 14 12 11 17 17 C 1.50697 * 109.47266 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99865 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99925 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00389 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99821 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46850 * 59.99963 * 21 19 17 23 23 H 1.48498 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47393 * 300.00356 * 21 19 17 25 25 H 4.18745 * 15.03913 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.46828 * 60.00540 * 5 3 2 27 27 H 1.09002 * 109.47199 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47338 * 59.99847 * 6 5 3 29 29 H 1.09003 * 109.47089 * 180.02562 * 6 5 3 30 30 H 1.08994 * 109.46926 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.46954 * 300.00288 * 7 6 5 32 32 H 1.09001 * 109.46732 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47577 * 59.99800 * 8 7 6 34 34 H 1.08996 * 109.46989 * 300.00583 * 16 14 12 35 35 H 1.09002 * 109.46768 * 59.99928 * 16 14 12 36 36 H 1.08996 * 109.46948 * 180.02562 * 16 14 12 37 37 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0097 -0.7673 0.6827 5 6 3.1553 1.3699 0.4546 6 6 2.6448 2.4478 -0.5036 7 6 3.1550 2.1573 -1.9165 8 6 2.6456 0.7881 -2.3711 9 6 3.1562 -0.2899 -1.4129 10 1 4.2461 -0.2890 -1.4130 11 8 2.6727 -1.5893 -1.8443 12 6 3.4465 -2.2734 -2.7018 13 8 4.4932 -1.8022 -3.0789 14 6 3.0101 -3.6295 -3.1931 15 1 2.8970 -4.3043 -2.3446 16 6 1.6723 -3.5010 -3.9243 17 6 4.0481 -4.1798 -4.1369 18 1 4.9349 -3.6047 -4.3591 19 6 3.8657 -5.4173 -4.7168 20 7 2.7856 -6.1173 -4.4467 21 14 5.1520 -6.0990 -5.8873 22 1 6.4507 -6.2232 -5.1777 23 1 4.7221 -7.4354 -6.3714 24 1 5.3058 -5.1801 -7.0436 25 1 -1.0500 -0.0003 0.0009 26 1 2.7920 1.5768 1.4612 27 1 4.2453 1.3703 0.4551 28 1 1.5548 2.4473 -0.5037 29 1 3.0081 3.4233 -0.1800 30 1 2.7909 2.9250 -2.5992 31 1 4.2450 2.1578 -1.9165 32 1 3.0094 0.5809 -3.3775 33 1 1.5556 0.7876 -2.3711 34 1 0.9218 -3.1031 -3.2413 35 1 1.7854 -2.8261 -4.7728 36 1 1.3565 -4.4819 -4.2793 37 1 2.6575 -6.9881 -4.8544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851536241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = -75.772239 kcal Electronic energy + Delta-G solvation = -18603.026678 eV Core-core repulsion = 15731.312276 eV Total energy + Delta-G solvation = -2871.714402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66183 -39.61473 -37.00104 -35.93423 -33.96618 -32.73829 -31.42258 -30.79242 -27.30880 -25.45460 -24.12960 -23.42874 -21.67832 -21.33227 -18.77522 -18.33720 -18.05017 -17.61989 -16.81573 -16.63018 -15.96914 -15.35666 -15.30346 -14.87660 -14.46618 -14.11163 -14.05250 -13.58843 -13.44771 -13.00899 -12.80433 -12.73530 -12.63295 -12.48406 -12.29375 -12.07682 -12.02000 -11.80430 -11.62557 -11.34967 -11.15073 -11.09905 -10.85636 -10.71942 -10.53913 -8.20958 -6.34773 1.41385 1.42484 1.45138 1.51767 1.83006 1.96175 2.06326 2.43304 3.08866 3.36416 3.66108 3.80332 3.88992 4.01159 4.14314 4.15285 4.40646 4.42126 4.57273 4.61626 4.64929 4.85928 4.87848 4.92049 4.98153 5.04566 5.13191 5.19858 5.21878 5.26516 5.36782 5.42145 5.54399 5.68381 5.85794 6.08127 6.71420 6.79531 7.05790 7.34089 8.85511 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.005342 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.448148 B = 5240.637762 C = 5622.860820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.024 3.976 4 H 0.097 0.903 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.110 4.110 8 C -0.131 4.131 9 C 0.084 3.916 10 H 0.079 0.921 11 O -0.358 6.358 12 C 0.472 3.528 13 O -0.541 6.541 14 C 0.050 3.950 15 H 0.047 0.953 16 C -0.118 4.118 17 C -0.540 4.540 18 H 0.057 0.943 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.274 1.274 25 H 0.243 0.757 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 15.126 9.144 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.195 4.195 3 C 0.006 3.994 4 H 0.114 0.886 5 C -0.140 4.140 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.169 4.169 9 C 0.030 3.970 10 H 0.097 0.903 11 O -0.275 6.275 12 C 0.318 3.682 13 O -0.431 6.431 14 C 0.031 3.969 15 H 0.065 0.935 16 C -0.176 4.176 17 C -0.577 4.577 18 H 0.075 0.925 19 C -0.178 4.178 20 N -0.548 5.548 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.199 1.199 25 H 0.259 0.741 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.972 15.129 9.013 17.859 hybrid contribution 0.511 -0.750 -0.799 1.209 sum -2.462 14.379 8.214 16.742 Atomic orbital electron populations 1.25547 0.96649 1.00395 0.99582 1.22900 0.94448 1.00835 1.01342 1.18518 0.86014 1.00822 0.94013 0.88552 1.21590 1.01751 0.90388 1.00290 1.21586 1.01036 0.99235 0.93611 1.21499 1.01187 0.94245 0.97861 1.21907 1.01531 0.95710 0.97776 1.22901 0.99234 0.80171 0.94712 0.90309 1.86663 1.50509 1.32116 1.58240 1.24803 0.81186 0.87944 0.74294 1.90449 1.25690 1.70417 1.56506 1.18660 0.96662 0.84987 0.96622 0.93477 1.21530 0.95053 1.02565 0.98413 1.21216 1.05641 1.03329 1.27555 0.92516 1.25664 0.97800 0.96431 0.97884 1.69956 1.27339 1.13080 1.44416 0.85503 0.79063 0.77565 0.78886 1.19836 1.19790 1.19883 0.74081 0.88938 0.89539 0.92016 0.89003 0.90097 0.91259 0.93757 0.91360 0.93755 0.95387 0.90301 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.92 19.25 74.32 1.43 -3.49 16 2 C -0.20 -5.29 9.70 31.13 0.30 -4.99 16 3 C 0.02 0.63 2.82 -12.60 -0.04 0.60 16 4 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 5 C -0.10 -1.86 5.43 30.59 0.17 -1.70 16 6 C -0.12 -2.03 5.70 30.59 0.17 -1.85 16 7 C -0.11 -2.34 5.92 30.60 0.18 -2.16 16 8 C -0.13 -3.93 5.34 30.60 0.16 -3.76 16 9 C 0.08 2.79 2.12 30.60 0.06 2.86 16 10 H 0.08 2.74 7.16 -2.39 -0.02 2.72 16 11 O -0.36 -15.00 9.40 -51.46 -0.48 -15.49 16 12 C 0.47 23.21 7.22 71.24 0.51 23.73 16 13 O -0.54 -28.52 14.68 21.98 0.32 -28.20 16 14 C 0.05 2.65 2.74 -12.29 -0.03 2.62 16 15 H 0.05 2.63 8.14 -2.38 -0.02 2.61 16 16 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 17 C -0.54 -31.36 8.37 25.60 0.21 -31.15 16 18 H 0.06 3.44 6.76 -2.91 -0.02 3.42 16 19 C 0.02 1.24 5.30 84.65 0.45 1.69 16 20 N -0.91 -51.36 11.32 21.45 0.24 -51.12 16 21 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H 0.24 3.91 7.80 -4.42 -0.03 3.88 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.15 7.23 -2.39 -0.02 1.13 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.06 7.23 -2.39 -0.02 2.04 16 34 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 4.16 6.07 -2.39 -0.01 4.14 16 37 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -65.78 307.03 7.38 -58.41 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.04 Total: 12.78 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.23 Total: -22.78 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.24 Total: -51.12 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.16 Total: -43.69 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.78 7.38 -58.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.366 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds