Wall clock time and date at job start Mon Mar 30 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47593 * 9.19352 * 3 2 1 5 5 C 1.53006 * 109.47177 * 249.19039 * 3 2 1 6 6 C 1.53000 * 109.47215 * 300.00345 * 5 3 2 7 7 C 1.52999 * 109.47216 * 300.00011 * 6 5 3 8 8 C 1.52996 * 109.47359 * 59.99689 * 7 6 5 9 9 C 1.53000 * 109.47210 * 300.00315 * 8 7 6 10 10 H 1.09000 * 109.46955 * 299.99604 * 9 8 7 11 11 O 1.45206 * 109.47102 * 179.97438 * 9 8 7 12 12 C 1.34224 * 117.00077 * 90.00098 * 11 9 8 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 9 15 15 C 1.52999 * 109.47581 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47581 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99778 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00242 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99823 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46719 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47130 * 119.99734 * 20 18 16 23 23 H 1.48501 * 109.47193 * 240.00108 * 20 18 16 24 24 H 4.18742 * 15.03999 * 359.97438 * 4 2 1 25 25 H 1.09000 * 109.46639 * 59.99815 * 5 3 2 26 26 H 1.09000 * 109.47156 * 180.02562 * 5 3 2 27 27 H 1.09004 * 109.47390 * 59.99843 * 6 5 3 28 28 H 1.09002 * 109.47131 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47506 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47153 * 299.99872 * 7 6 5 31 31 H 1.09000 * 109.47531 * 179.97438 * 8 7 6 32 32 H 1.09008 * 109.47250 * 60.00472 * 8 7 6 33 33 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 34 34 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 35 35 H 1.09005 * 109.46903 * 300.00018 * 15 14 12 36 36 H 1.09000 * 109.47608 * 59.99121 * 15 14 12 37 37 H 0.97002 * 119.99857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0136 -0.1642 5 6 3.1558 0.5134 1.3484 6 6 2.6451 1.9371 1.5789 7 6 3.1546 2.8489 0.4609 8 6 2.6449 2.3363 -0.8875 9 6 3.1556 0.9125 -1.1179 10 1 4.2456 0.9131 -1.1180 11 8 2.6714 0.4258 -2.3974 12 6 3.4442 0.6583 -3.4699 13 8 4.4905 1.2494 -3.3440 14 6 3.0064 0.1832 -4.8314 15 6 4.0595 0.5729 -5.8706 16 6 3.6215 0.0984 -7.2322 17 1 2.6858 -0.4289 -7.3450 18 6 4.4153 0.3373 -8.3339 19 7 5.5545 0.9798 -8.1965 20 14 3.8726 -0.2516 -10.0215 21 1 2.5635 -0.9432 -9.9070 22 1 3.7397 0.9131 -10.9331 23 1 4.8836 -1.1934 -10.5659 24 1 -1.0500 -0.0012 0.0003 25 1 2.7927 -0.1362 2.1449 26 1 4.2458 0.5143 1.3483 27 1 1.5551 1.9366 1.5789 28 1 3.0079 2.3022 2.5397 29 1 2.7912 3.8633 0.6253 30 1 4.2446 2.8495 0.4609 31 1 3.0075 2.9861 -1.6839 32 1 1.5549 2.3357 -0.8875 33 1 2.8929 -0.9009 -4.8187 34 1 2.0534 0.6453 -5.0884 35 1 4.1736 1.6569 -5.8834 36 1 5.0125 0.1105 -5.6134 37 1 6.1132 1.1476 -8.9716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851536752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:47 Heat of formation + Delta-G solvation = -65.950902 kcal Electronic energy + Delta-G solvation = -18025.933019 eV Core-core repulsion = 15154.644502 eV Total energy + Delta-G solvation = -2871.288517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37641 -38.52878 -35.72033 -33.56856 -33.11728 -31.22615 -30.56594 -29.89664 -26.03907 -23.31915 -23.22814 -21.64833 -20.77697 -19.67606 -17.59304 -17.31652 -16.54415 -15.94996 -15.69730 -15.09360 -14.52643 -14.46498 -14.27897 -13.65011 -13.37179 -12.80847 -12.67994 -12.38833 -12.24071 -11.84940 -11.44315 -11.21074 -11.13389 -10.97304 -10.95840 -10.66579 -10.61745 -10.40831 -10.11610 -10.04427 -9.88759 -9.77307 -9.50106 -9.14927 -8.37324 -6.00951 -4.05625 2.80116 2.83118 2.88961 3.14561 3.31275 3.38695 3.42633 4.19457 4.44697 4.54800 4.67885 4.73165 4.93442 4.99252 5.14704 5.25887 5.34622 5.37425 5.43297 5.52499 5.66222 5.77636 5.89484 5.94334 5.97960 6.02628 6.11921 6.14742 6.21133 6.25918 6.70194 6.99091 7.64789 7.67780 7.74696 7.98984 8.28000 8.44777 9.01779 9.58492 11.10145 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042824 B = 0.004106 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.681994 B = 6817.218988 C = 7179.548456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C 0.023 3.977 4 H 0.099 0.901 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.115 4.115 8 C -0.136 4.136 9 C 0.095 3.905 10 H 0.092 0.908 11 O -0.357 6.357 12 C 0.455 3.545 13 O -0.506 6.506 14 C -0.104 4.104 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.215 0.785 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -0.030 19.670 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.161 4.161 3 C 0.005 3.995 4 H 0.117 0.883 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.174 4.174 9 C 0.040 3.960 10 H 0.110 0.890 11 O -0.275 6.275 12 C 0.299 3.701 13 O -0.393 6.393 14 C -0.141 4.141 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.232 0.768 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.964 0.227 19.640 20.839 hybrid contribution -0.338 -0.227 -0.979 1.060 sum -7.301 0.000 18.660 20.038 Atomic orbital electron populations 1.24765 0.95752 1.01383 1.01067 1.22556 0.93767 0.99874 0.99926 1.18461 0.85902 1.00424 0.94711 0.88312 1.21548 1.01178 0.97019 0.94794 1.21602 1.01342 0.94601 0.98482 1.21483 1.01124 0.99032 0.93655 1.21939 1.01941 0.95285 0.98203 1.22563 0.99739 0.93187 0.80536 0.89026 1.86667 1.50913 1.73585 1.16350 1.24777 0.82027 0.76099 0.87174 1.90617 1.24174 1.38542 1.85927 1.21754 1.03446 1.02363 0.86561 1.19017 0.92678 0.97932 0.90782 1.21201 1.06085 1.37234 0.92051 0.92274 1.25018 0.94901 0.95126 0.99274 1.70005 1.11854 1.40722 1.30239 0.86494 0.78682 0.78495 0.84069 1.19644 1.20960 1.20960 0.76838 0.90766 0.90515 0.91533 0.91564 0.91376 0.91467 0.90970 0.90885 0.89046 0.89055 0.95613 0.95598 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.37 19.25 29.55 0.57 -1.80 16 2 C -0.16 -1.99 9.70 -37.12 -0.36 -2.35 16 3 C 0.02 0.27 2.82 -93.40 -0.26 0.00 16 4 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.11 -0.95 5.43 -26.73 -0.15 -1.10 16 6 C -0.12 -1.07 5.70 -26.73 -0.15 -1.22 16 7 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 8 C -0.14 -1.77 5.34 -26.73 -0.14 -1.91 16 9 C 0.09 1.35 2.12 -26.73 -0.06 1.29 16 10 H 0.09 1.36 7.16 -51.93 -0.37 0.99 16 11 O -0.36 -6.18 9.49 -39.24 -0.37 -6.55 16 12 C 0.46 9.20 7.93 36.00 0.29 9.48 16 13 O -0.51 -11.57 15.20 -18.76 -0.29 -11.86 16 14 C -0.10 -2.18 5.75 -27.89 -0.16 -2.34 16 15 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.21 1.66 7.80 -54.09 -0.42 1.24 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.62 7.23 -51.93 -0.38 0.25 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.96 7.23 -51.92 -0.38 0.59 16 33 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -32.46 312.58 -7.08 -39.54 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.73 Total: -1.84 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.11 Total: -14.12 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.66 Total: -18.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.46 -7.08 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.411 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds