Wall clock time and date at job start Mon Mar 30 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47593 * 9.19352 * 3 2 1 5 5 C 1.53006 * 109.47177 * 249.19039 * 3 2 1 6 6 C 1.53000 * 109.47215 * 300.00345 * 5 3 2 7 7 C 1.52999 * 109.47216 * 300.00011 * 6 5 3 8 8 C 1.52996 * 109.47359 * 59.99689 * 7 6 5 9 9 C 1.53000 * 109.47210 * 300.00315 * 8 7 6 10 10 H 1.09000 * 109.46955 * 299.99604 * 9 8 7 11 11 O 1.45206 * 109.47102 * 179.97438 * 9 8 7 12 12 C 1.34224 * 117.00077 * 90.00098 * 11 9 8 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 9 15 15 C 1.52999 * 109.47581 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47581 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99778 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00242 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99823 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46719 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47130 * 119.99734 * 20 18 16 23 23 H 1.48501 * 109.47193 * 240.00108 * 20 18 16 24 24 H 4.18742 * 15.03999 * 359.97438 * 4 2 1 25 25 H 1.09000 * 109.46639 * 59.99815 * 5 3 2 26 26 H 1.09000 * 109.47156 * 180.02562 * 5 3 2 27 27 H 1.09004 * 109.47390 * 59.99843 * 6 5 3 28 28 H 1.09002 * 109.47131 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47506 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47153 * 299.99872 * 7 6 5 31 31 H 1.09000 * 109.47531 * 179.97438 * 8 7 6 32 32 H 1.09008 * 109.47250 * 60.00472 * 8 7 6 33 33 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 34 34 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 35 35 H 1.09005 * 109.46903 * 300.00018 * 15 14 12 36 36 H 1.09000 * 109.47608 * 59.99121 * 15 14 12 37 37 H 0.97002 * 119.99857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0136 -0.1642 5 6 3.1558 0.5134 1.3484 6 6 2.6451 1.9371 1.5789 7 6 3.1546 2.8489 0.4609 8 6 2.6449 2.3363 -0.8875 9 6 3.1556 0.9125 -1.1179 10 1 4.2456 0.9131 -1.1180 11 8 2.6714 0.4258 -2.3974 12 6 3.4442 0.6583 -3.4699 13 8 4.4905 1.2494 -3.3440 14 6 3.0064 0.1832 -4.8314 15 6 4.0595 0.5729 -5.8706 16 6 3.6215 0.0984 -7.2322 17 1 2.6858 -0.4289 -7.3450 18 6 4.4153 0.3373 -8.3339 19 7 5.5545 0.9798 -8.1965 20 14 3.8726 -0.2516 -10.0215 21 1 2.5635 -0.9432 -9.9070 22 1 3.7397 0.9131 -10.9331 23 1 4.8836 -1.1934 -10.5659 24 1 -1.0500 -0.0012 0.0003 25 1 2.7927 -0.1362 2.1449 26 1 4.2458 0.5143 1.3483 27 1 1.5551 1.9366 1.5789 28 1 3.0079 2.3022 2.5397 29 1 2.7912 3.8633 0.6253 30 1 4.2446 2.8495 0.4609 31 1 3.0075 2.9861 -1.6839 32 1 1.5549 2.3357 -0.8875 33 1 2.8929 -0.9009 -4.8187 34 1 2.0534 0.6453 -5.0884 35 1 4.1736 1.6569 -5.8834 36 1 5.0125 0.1105 -5.6134 37 1 6.1132 1.1476 -8.9716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851536752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:47 Heat of formation + Delta-G solvation = -83.479748 kcal Electronic energy + Delta-G solvation = -18026.693127 eV Core-core repulsion = 15154.644502 eV Total energy + Delta-G solvation = -2872.048625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78540 -39.68832 -37.16967 -35.66227 -33.98105 -33.19395 -31.46028 -30.94643 -28.02845 -24.79087 -24.15784 -23.17102 -21.70232 -21.27429 -19.10572 -18.56335 -18.07713 -17.43683 -17.23957 -16.49849 -16.18513 -15.51681 -15.33865 -14.85583 -14.66149 -14.34055 -14.01752 -13.79115 -13.60436 -13.26154 -12.87923 -12.75957 -12.49734 -12.48828 -12.09362 -12.03041 -11.86460 -11.76565 -11.64048 -11.42532 -11.37419 -11.26323 -10.91771 -10.74610 -10.59651 -8.21120 -6.35074 1.22292 1.42679 1.43880 1.57135 1.66571 1.94598 2.02645 2.42539 3.12735 3.34230 3.62592 3.74296 3.77054 3.96412 4.11586 4.12160 4.26303 4.38796 4.42085 4.44777 4.55259 4.59581 4.82685 4.86926 4.96047 5.03055 5.11140 5.18993 5.20896 5.25211 5.37434 5.44312 5.50594 5.53150 5.79206 6.12128 6.76893 6.79893 6.85861 7.35332 8.91830 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042824 B = 0.004106 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.681994 B = 6817.218988 C = 7179.548456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.025 3.975 4 H 0.101 0.899 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.133 4.133 9 C 0.087 3.913 10 H 0.081 0.919 11 O -0.352 6.352 12 C 0.464 3.536 13 O -0.541 6.541 14 C -0.095 4.095 15 C 0.040 3.960 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.279 1.279 24 H 0.243 0.757 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.112 0.888 35 H -0.011 1.011 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -0.933 20.531 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C 0.007 3.993 4 H 0.119 0.881 5 C -0.142 4.142 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.171 4.171 9 C 0.032 3.968 10 H 0.099 0.901 11 O -0.269 6.269 12 C 0.309 3.691 13 O -0.431 6.431 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.178 1.178 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.259 0.741 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.906 -0.688 20.531 22.390 hybrid contribution 0.230 0.076 -1.167 1.191 sum -8.677 -0.612 19.364 21.228 Atomic orbital electron populations 1.25554 0.96632 0.99983 0.99719 1.22869 0.94383 1.01192 1.01235 1.18507 0.86040 0.99906 0.94821 0.88142 1.21600 1.01749 0.97358 0.93481 1.21587 1.01082 0.94107 0.98768 1.21501 1.01176 0.99990 0.92328 1.21921 1.01737 0.94101 0.99317 1.22937 0.99380 0.94799 0.79661 0.90105 1.86622 1.50109 1.73237 1.16969 1.24482 0.81522 0.75313 0.87778 1.90607 1.25742 1.40199 1.86540 1.21509 1.02124 1.03853 0.85763 1.18788 0.93000 0.95246 0.92719 1.21664 1.06721 1.37167 0.92694 0.90572 1.26092 0.94767 0.95049 1.04178 1.70164 1.13410 1.42183 1.31768 0.85258 0.78882 0.78022 0.78003 1.17769 1.20529 1.20491 0.74108 0.88948 0.89615 0.91909 0.89257 0.90183 0.91391 0.93554 0.91013 0.86816 0.87027 0.99224 0.99073 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.03 19.25 74.32 1.43 -2.60 16 2 C -0.20 -4.51 9.70 31.12 0.30 -4.21 16 3 C 0.03 0.56 2.82 -12.60 -0.04 0.52 16 4 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 5 C -0.10 -1.62 5.43 30.60 0.17 -1.45 16 6 C -0.12 -1.78 5.70 30.59 0.17 -1.61 16 7 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 8 C -0.13 -3.47 5.34 30.59 0.16 -3.31 16 9 C 0.09 2.46 2.12 30.60 0.06 2.53 16 10 H 0.08 2.47 7.16 -2.39 -0.02 2.46 16 11 O -0.35 -12.19 9.49 -51.35 -0.49 -12.68 16 12 C 0.46 19.13 7.93 71.23 0.56 19.69 16 13 O -0.54 -25.90 15.20 21.94 0.33 -25.57 16 14 C -0.10 -4.01 5.75 29.85 0.17 -3.84 16 15 C 0.04 2.20 4.26 29.85 0.13 2.33 16 16 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 19 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 21 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H 0.24 3.00 7.80 -4.42 -0.03 2.96 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.02 7.23 -2.38 -0.02 1.00 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.86 7.23 -2.38 -0.02 1.85 16 33 H 0.11 4.28 8.14 -2.38 -0.02 4.26 16 34 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 35 H -0.01 -0.66 8.10 -2.38 -0.02 -0.68 16 36 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -71.80 312.58 7.19 -64.61 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.03 Total: 10.12 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 4.01 Total: -24.29 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.28 Total: -58.30 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.15 Total: -38.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.80 7.19 -64.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.874 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds