Wall clock time and date at job start Mon Mar 30 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47233 * 356.94893 * 3 2 1 5 5 C 1.53007 * 109.46995 * 116.95087 * 3 2 1 6 6 C 1.52994 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47327 * 299.99795 * 6 5 3 8 8 C 1.53002 * 109.46627 * 60.00329 * 7 6 5 9 9 C 1.53000 * 109.46685 * 236.94566 * 3 2 1 10 10 H 1.08997 * 109.47552 * 300.00131 * 9 3 2 11 11 O 1.45196 * 109.47051 * 60.00638 * 9 3 2 12 12 C 1.34234 * 116.99938 * 209.99593 * 11 9 3 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46754 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47725 * 119.99421 * 20 18 16 23 23 H 1.48500 * 109.46950 * 239.99755 * 20 18 16 24 24 H 4.18740 * 15.04119 * 0.02562 * 4 2 1 25 25 H 1.08997 * 109.46828 * 300.00136 * 5 3 2 26 26 H 1.09002 * 109.47199 * 59.99354 * 5 3 2 27 27 H 1.09002 * 109.47338 * 59.99847 * 6 5 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.46926 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.46954 * 300.00288 * 7 6 5 31 31 H 1.09001 * 109.46732 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47577 * 59.99800 * 8 7 6 33 33 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 34 34 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 35 35 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 36 36 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 37 37 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0253 0.0547 5 6 3.1557 0.6547 -1.2859 6 6 4.6857 0.6560 -1.2856 7 6 5.1949 1.4433 -0.0765 8 6 4.6852 0.7892 1.2093 9 6 3.1556 0.7877 1.2091 10 1 2.7918 1.8137 1.1544 11 8 2.6719 0.1670 2.4293 12 6 2.4684 0.9727 3.4836 13 8 2.6867 2.1573 3.3896 14 6 1.9665 0.3998 4.7839 15 6 1.8209 1.5223 5.8133 16 6 1.3184 0.9495 7.1135 17 1 1.1221 -0.1092 7.1971 18 6 1.1082 1.7772 8.1959 19 7 1.3467 3.0665 8.0939 20 14 0.4861 1.0672 9.8078 21 1 0.2978 -0.3988 9.6630 22 1 1.4756 1.3358 10.8819 23 1 -0.8105 1.6999 10.1597 24 1 -1.0500 -0.0012 -0.0004 25 1 2.7926 0.0941 -2.1472 26 1 2.7918 1.6807 -1.3406 27 1 5.0499 -0.3699 -1.2307 28 1 5.0488 1.1223 -2.2015 29 1 6.2848 1.4438 -0.0761 30 1 4.8307 2.4692 -0.1314 31 1 5.0475 1.3503 2.0706 32 1 5.0493 -0.2367 1.2642 33 1 0.9976 -0.0729 4.6228 34 1 2.6756 -0.3415 5.1521 35 1 2.7895 1.9954 5.9745 36 1 1.1114 2.2633 5.4448 37 1 1.1992 3.6488 8.8556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851536754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:52 Heat of formation + Delta-G solvation = -68.380236 kcal Electronic energy + Delta-G solvation = -17992.053254 eV Core-core repulsion = 15120.659393 eV Total energy + Delta-G solvation = -2871.393861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32806 -38.38535 -35.68923 -33.62826 -33.55757 -31.22211 -30.41557 -29.78243 -26.03598 -23.40349 -23.25284 -21.66497 -20.24611 -19.67009 -18.28528 -17.35654 -16.43056 -15.80004 -15.69786 -14.95885 -14.56201 -14.45760 -14.21183 -13.64091 -13.49572 -12.86771 -12.68620 -12.46443 -12.23692 -11.73482 -11.43062 -11.24187 -11.10048 -11.00784 -10.95979 -10.77839 -10.61852 -10.31757 -10.15904 -10.03812 -9.92138 -9.81370 -9.48785 -9.14501 -8.36994 -6.00546 -4.05263 2.79971 2.83400 2.88612 3.15163 3.31419 3.38813 3.42732 4.16306 4.44774 4.52523 4.70132 4.76868 4.95430 4.99918 5.11582 5.21258 5.22749 5.34948 5.44949 5.56613 5.65898 5.80347 5.86919 5.89064 5.92791 6.03829 6.10400 6.14963 6.19272 6.25213 6.70855 7.00465 7.64867 7.68188 7.75244 7.99417 8.28652 8.45890 9.02128 9.58792 11.10556 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.004261 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.615277 B = 6569.192282 C = 6992.727626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.028 3.972 4 H 0.100 0.900 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.095 3.905 10 H 0.086 0.914 11 O -0.358 6.358 12 C 0.456 3.544 13 O -0.506 6.506 14 C -0.103 4.103 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.217 0.783 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -6.660 -19.077 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C 0.010 3.990 4 H 0.118 0.882 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.173 4.173 9 C 0.040 3.960 10 H 0.104 0.896 11 O -0.276 6.276 12 C 0.300 3.700 13 O -0.392 6.392 14 C -0.141 4.141 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.234 0.766 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.992 -6.121 -19.035 20.609 hybrid contribution -0.569 -0.169 0.934 1.106 sum 4.424 -6.289 -18.101 19.667 Atomic orbital electron populations 1.24882 0.95889 1.00583 1.00355 1.22769 0.94034 1.00734 1.00606 1.18394 0.85113 1.01308 0.94233 0.88161 1.21546 0.95846 1.01549 0.95567 1.21601 0.94761 1.01065 0.98458 1.21521 1.00774 0.99723 0.93534 1.21947 0.93953 1.02330 0.99093 1.22552 0.93860 0.97889 0.81738 0.89628 1.86623 1.77454 1.42679 1.20861 1.24748 0.73741 0.85715 0.85775 1.90613 1.47775 1.17460 1.83377 1.21751 1.01681 1.02628 0.88036 1.19015 0.98518 0.91821 0.91048 1.21201 1.44852 0.94439 0.96058 0.92269 1.25019 0.95503 0.94805 0.98995 1.70005 1.48441 1.03424 1.30950 0.86494 0.78492 0.79245 0.83509 1.19638 1.20955 1.20969 0.76601 0.90746 0.91154 0.91408 0.91260 0.91128 0.91448 0.90654 0.90742 0.89092 0.89027 0.95600 0.95638 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 19.25 29.55 0.57 -1.97 16 2 C -0.18 -2.47 12.20 -37.12 -0.45 -2.92 16 3 C 0.03 0.33 2.32 -93.40 -0.22 0.11 16 4 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.11 -0.98 5.16 -26.73 -0.14 -1.11 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 7 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 8 C -0.14 -1.64 5.56 -26.75 -0.15 -1.79 16 9 C 0.09 1.37 1.85 -26.75 -0.05 1.32 16 10 H 0.09 1.40 7.16 -51.93 -0.37 1.03 16 11 O -0.36 -6.26 9.50 -39.27 -0.37 -6.64 16 12 C 0.46 9.39 7.93 36.01 0.29 9.68 16 13 O -0.51 -11.83 15.20 -18.75 -0.28 -12.12 16 14 C -0.10 -2.20 5.75 -27.89 -0.16 -2.36 16 15 C 0.03 0.89 4.26 -27.89 -0.12 0.77 16 16 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H 0.22 2.00 7.80 -54.09 -0.42 1.58 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -32.90 316.31 -7.16 -40.06 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.83 Total: -1.85 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.16 Total: -14.29 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.66 Total: -18.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.90 -7.16 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.322 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds