Wall clock time and date at job start Mon Mar 30 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47233 * 356.94893 * 3 2 1 5 5 C 1.53007 * 109.46995 * 116.95087 * 3 2 1 6 6 C 1.52994 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47327 * 299.99795 * 6 5 3 8 8 C 1.53002 * 109.46627 * 60.00329 * 7 6 5 9 9 C 1.53000 * 109.46685 * 236.94566 * 3 2 1 10 10 H 1.08997 * 109.47552 * 300.00131 * 9 3 2 11 11 O 1.45196 * 109.47051 * 60.00638 * 9 3 2 12 12 C 1.34234 * 116.99938 * 209.99593 * 11 9 3 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46754 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47725 * 119.99421 * 20 18 16 23 23 H 1.48500 * 109.46950 * 239.99755 * 20 18 16 24 24 H 4.18740 * 15.04119 * 0.02562 * 4 2 1 25 25 H 1.08997 * 109.46828 * 300.00136 * 5 3 2 26 26 H 1.09002 * 109.47199 * 59.99354 * 5 3 2 27 27 H 1.09002 * 109.47338 * 59.99847 * 6 5 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.46926 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.46954 * 300.00288 * 7 6 5 31 31 H 1.09001 * 109.46732 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47577 * 59.99800 * 8 7 6 33 33 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 34 34 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 35 35 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 36 36 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 37 37 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0253 0.0547 5 6 3.1557 0.6547 -1.2859 6 6 4.6857 0.6560 -1.2856 7 6 5.1949 1.4433 -0.0765 8 6 4.6852 0.7892 1.2093 9 6 3.1556 0.7877 1.2091 10 1 2.7918 1.8137 1.1544 11 8 2.6719 0.1670 2.4293 12 6 2.4684 0.9727 3.4836 13 8 2.6867 2.1573 3.3896 14 6 1.9665 0.3998 4.7839 15 6 1.8209 1.5223 5.8133 16 6 1.3184 0.9495 7.1135 17 1 1.1221 -0.1092 7.1971 18 6 1.1082 1.7772 8.1959 19 7 1.3467 3.0665 8.0939 20 14 0.4861 1.0672 9.8078 21 1 0.2978 -0.3988 9.6630 22 1 1.4756 1.3358 10.8819 23 1 -0.8105 1.6999 10.1597 24 1 -1.0500 -0.0012 -0.0004 25 1 2.7926 0.0941 -2.1472 26 1 2.7918 1.6807 -1.3406 27 1 5.0499 -0.3699 -1.2307 28 1 5.0488 1.1223 -2.2015 29 1 6.2848 1.4438 -0.0761 30 1 4.8307 2.4692 -0.1314 31 1 5.0475 1.3503 2.0706 32 1 5.0493 -0.2367 1.2642 33 1 0.9976 -0.0729 4.6228 34 1 2.6756 -0.3415 5.1521 35 1 2.7895 1.9954 5.9745 36 1 1.1114 2.2633 5.4448 37 1 1.1992 3.6488 8.8556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851536754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:52 Heat of formation + Delta-G solvation = -86.349530 kcal Electronic energy + Delta-G solvation = -17992.832461 eV Core-core repulsion = 15120.659393 eV Total energy + Delta-G solvation = -2872.173068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77543 -39.54800 -37.13745 -35.67238 -34.54700 -33.20329 -31.35448 -30.80431 -28.03733 -24.81301 -24.23571 -23.19220 -21.44733 -20.99974 -19.27326 -19.10310 -18.22222 -17.32315 -17.21259 -16.49537 -16.00054 -15.56835 -15.22290 -14.88672 -14.64521 -14.34620 -14.10118 -13.86804 -13.66589 -13.26087 -12.88704 -12.72457 -12.49088 -12.47568 -12.13206 -12.04648 -11.85266 -11.76844 -11.59205 -11.48604 -11.38954 -11.28449 -11.00126 -10.85787 -10.60405 -8.21580 -6.35801 1.21406 1.42347 1.43728 1.56901 1.63925 1.81891 1.89807 2.42174 3.12211 3.26876 3.60803 3.72782 3.87229 3.91789 4.12227 4.18561 4.23694 4.37386 4.38705 4.41063 4.46502 4.75724 4.77596 4.81968 5.00518 5.04822 5.11210 5.13495 5.24854 5.25564 5.37762 5.43841 5.50591 5.51585 5.78277 6.11136 6.66123 6.77405 6.84598 7.34699 8.91454 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.004261 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.615277 B = 6569.192282 C = 6992.727626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.216 4.216 3 C 0.030 3.970 4 H 0.115 0.885 5 C -0.103 4.103 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.133 4.133 9 C 0.088 3.912 10 H 0.059 0.941 11 O -0.351 6.351 12 C 0.464 3.536 13 O -0.544 6.544 14 C -0.095 4.095 15 C 0.040 3.960 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.976 3.024 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.242 0.758 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.116 0.884 35 H -0.010 1.010 36 H -0.013 1.013 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -9.003 -19.906 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.216 4.216 3 C 0.012 3.988 4 H 0.133 0.867 5 C -0.141 4.141 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.171 4.171 9 C 0.033 3.967 10 H 0.077 0.923 11 O -0.269 6.269 12 C 0.309 3.691 13 O -0.434 6.434 14 C -0.132 4.132 15 C 0.003 3.997 16 C -0.582 4.582 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.259 0.741 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.009 0.991 36 H 0.006 0.994 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.084 -8.498 -19.894 22.223 hybrid contribution -0.604 0.586 1.113 1.395 sum 4.480 -7.912 -18.782 20.867 Atomic orbital electron populations 1.25697 0.96932 0.99789 0.99463 1.23404 0.95149 1.01567 1.01509 1.18535 0.84468 1.01836 0.93915 0.86683 1.21576 0.96959 1.00971 0.94550 1.21601 0.93421 1.01875 0.98290 1.21544 1.01838 0.99141 0.92765 1.21965 0.92043 1.03271 0.99792 1.22923 0.95571 0.96958 0.81233 0.92296 1.86571 1.77072 1.42007 1.21204 1.24501 0.73034 0.85156 0.86399 1.90604 1.49547 1.19085 1.84114 1.21514 1.03613 1.00838 0.87220 1.18785 0.95430 0.92721 0.92797 1.21662 1.44601 0.95388 0.96560 0.90477 1.26108 0.95509 0.95035 1.03475 1.70169 1.49732 1.05268 1.32419 0.85245 0.77701 0.79236 0.77904 1.17687 1.20464 1.20549 0.74111 0.88829 0.92144 0.89816 0.89114 0.89284 0.92540 0.93332 0.89006 0.87067 0.86582 0.99131 0.99408 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.91 19.25 74.32 1.43 -3.48 16 2 C -0.22 -5.70 12.20 31.13 0.38 -5.32 16 3 C 0.03 0.68 2.32 -12.60 -0.03 0.65 16 4 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.10 -1.66 5.16 30.59 0.16 -1.51 16 6 C -0.11 -1.43 5.92 30.59 0.18 -1.24 16 7 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 8 C -0.13 -3.16 5.56 30.58 0.17 -2.99 16 9 C 0.09 2.55 1.85 30.58 0.06 2.60 16 10 H 0.06 2.03 7.16 -2.39 -0.02 2.01 16 11 O -0.35 -12.27 9.50 -51.46 -0.49 -12.76 16 12 C 0.46 19.57 7.93 71.24 0.56 20.13 16 13 O -0.54 -26.85 15.20 21.98 0.33 -26.51 16 14 C -0.09 -4.03 5.75 29.85 0.17 -3.86 16 15 C 0.04 2.23 4.26 29.85 0.13 2.36 16 16 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 17 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -58.91 13.29 21.45 0.28 -58.62 16 20 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 21 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H 0.24 4.08 7.80 -4.42 -0.03 4.04 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 4.29 8.14 -2.38 -0.02 4.27 16 34 H 0.12 4.37 8.14 -2.39 -0.02 4.36 16 35 H -0.01 -0.60 8.10 -2.38 -0.02 -0.62 16 36 H -0.01 -0.78 8.10 -2.38 -0.02 -0.80 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -73.70 316.31 7.27 -66.43 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.02 Total: 10.25 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 4.09 Total: -24.97 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.28 Total: -58.62 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.15 Total: -39.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.70 7.27 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.919 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds