Wall clock time and date at job start Mon Mar 30 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46952 * 326.45591 * 3 2 1 5 5 C 1.52996 * 109.47098 * 206.45863 * 3 2 1 6 6 C 1.53001 * 109.47486 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46886 * 59.99437 * 6 5 3 8 8 C 1.52996 * 109.47328 * 300.00201 * 7 6 5 9 9 C 1.52997 * 109.47145 * 86.45811 * 3 2 1 10 10 H 1.09001 * 109.47375 * 60.00039 * 9 3 2 11 11 O 1.45206 * 109.46989 * 299.99922 * 9 3 2 12 12 C 1.34229 * 116.99848 * 150.00085 * 11 9 3 13 13 O 1.20823 * 120.00160 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99557 * 179.97438 * 12 11 9 15 15 C 1.53007 * 109.46750 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47104 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99790 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99812 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00008 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47350 * 90.00208 * 20 18 16 22 22 H 1.48505 * 109.47107 * 210.00343 * 20 18 16 23 23 H 1.48509 * 109.47273 * 329.99816 * 20 18 16 24 24 H 4.18740 * 15.03948 * 359.97438 * 4 2 1 25 25 H 1.09001 * 109.46997 * 299.99701 * 5 3 2 26 26 H 1.09000 * 109.47380 * 59.99364 * 5 3 2 27 27 H 1.09002 * 109.47508 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46652 * 299.99782 * 6 5 3 29 29 H 1.09001 * 109.47194 * 60.00677 * 7 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 31 31 H 1.08992 * 109.47554 * 300.00361 * 8 7 6 32 32 H 1.09004 * 109.47108 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46964 * 299.99925 * 14 12 11 34 34 H 1.08993 * 109.46838 * 60.00532 * 14 12 11 35 35 H 1.09001 * 109.46972 * 300.00084 * 15 14 12 36 36 H 1.08996 * 109.47398 * 59.99842 * 15 14 12 37 37 H 0.96999 * 119.99454 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.8557 0.5679 5 6 3.1554 1.2923 0.6427 6 6 4.6854 1.2933 0.6422 7 6 5.1949 1.2047 -0.7978 8 6 4.6856 -0.0870 -1.4404 9 6 3.1560 -0.0882 -1.4397 10 1 2.7923 0.7681 -2.0076 11 8 2.6726 -1.3141 -2.0496 12 6 2.4694 -1.2957 -3.3763 13 8 2.6888 -0.2888 -4.0072 14 6 1.9689 -2.5313 -4.0791 15 6 1.8247 -2.2440 -5.5750 16 6 1.3235 -3.4792 -6.2777 17 1 1.1279 -4.3794 -5.7139 18 6 1.1148 -3.4603 -7.6405 19 7 0.6779 -4.5386 -8.2538 20 14 1.4524 -1.9033 -8.6156 21 1 2.8623 -1.9073 -9.0821 22 1 0.5431 -1.8467 -9.7883 23 1 1.2202 -0.7179 -7.7516 24 1 -1.0500 -0.0004 0.0009 25 1 2.7917 2.1486 0.0748 26 1 2.7920 1.3557 1.6684 27 1 5.0483 2.2137 1.0996 28 1 5.0495 0.4369 1.2098 29 1 4.8309 2.0610 -1.3654 30 1 6.2850 1.2050 -0.7981 31 1 5.0496 -0.9433 -0.8729 32 1 5.0489 -0.1504 -2.4661 33 1 2.6788 -3.3453 -3.9326 34 1 1.0002 -2.8155 -3.6683 35 1 1.1150 -1.4297 -5.7218 36 1 2.7936 -1.9598 -5.9855 37 1 0.5307 -4.5251 -9.2125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851536755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:54 Heat of formation + Delta-G solvation = -65.203864 kcal Electronic energy + Delta-G solvation = -18058.383095 eV Core-core repulsion = 15187.126972 eV Total energy + Delta-G solvation = -2871.256123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44452 -38.48493 -35.81810 -33.68265 -33.60211 -31.46817 -30.50940 -29.88754 -26.47288 -23.45404 -23.23252 -21.45150 -20.31200 -19.70108 -18.34529 -17.54860 -16.75674 -15.93573 -15.87313 -15.02795 -14.63066 -14.35775 -14.09151 -13.71870 -13.62453 -12.97412 -12.79520 -12.68730 -12.52264 -11.80313 -11.53341 -11.46661 -11.20900 -11.07423 -11.00820 -10.83776 -10.43321 -10.27784 -10.20659 -10.13733 -10.00863 -9.84528 -9.63327 -9.24907 -8.55056 -6.06662 -4.06339 2.71717 2.75753 2.78945 3.05228 3.34520 3.41404 3.50937 4.10751 4.46146 4.46810 4.63658 4.70631 4.87803 4.93713 5.03922 5.14979 5.16471 5.28158 5.36243 5.49760 5.59042 5.74173 5.81120 5.82495 5.84087 5.97845 6.01464 6.03585 6.06414 6.14308 6.52956 6.85353 7.25012 7.32448 7.59968 7.71798 8.25306 8.48176 8.95842 9.55275 11.06005 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032870 B = 0.004668 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.648448 B = 5996.551930 C = 6389.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.183 4.183 3 C 0.028 3.972 4 H 0.101 0.899 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.095 3.905 10 H 0.086 0.914 11 O -0.355 6.355 12 C 0.458 3.542 13 O -0.512 6.512 14 C -0.096 4.096 15 C -0.001 4.001 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.217 0.783 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 11.285 19.445 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C 0.010 3.990 4 H 0.119 0.881 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.173 4.173 9 C 0.040 3.960 10 H 0.104 0.896 11 O -0.273 6.273 12 C 0.302 3.698 13 O -0.399 6.399 14 C -0.133 4.133 15 C -0.039 4.039 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.186 1.186 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.568 11.543 19.095 23.259 hybrid contribution -0.087 0.764 -0.703 1.042 sum 6.482 12.308 18.392 23.059 Atomic orbital electron populations 1.24896 0.95899 1.00681 1.00071 1.22757 0.94024 1.00571 1.00938 1.18388 0.85136 1.00142 0.95361 0.88086 1.21548 0.95847 0.96008 1.01109 1.21604 0.94754 1.02486 0.97072 1.21519 1.00809 0.97471 0.95739 1.21947 0.93873 0.98995 1.02531 1.22580 0.93918 0.87384 0.92156 0.89614 1.86622 1.77306 1.38769 1.24583 1.24718 0.73576 0.91609 0.79914 1.90597 1.48169 1.34833 1.66286 1.21534 1.02468 0.91712 0.97619 1.19473 0.97710 0.98131 0.88580 1.21039 1.44830 0.97497 0.93080 0.90658 1.24948 0.94308 0.96119 0.97687 1.69907 1.45994 1.28137 1.09880 0.86810 0.78450 0.84626 0.79750 1.20151 1.21298 1.18620 0.76572 0.91180 0.90680 0.91224 0.91352 0.91491 0.91092 0.90643 0.90699 0.88383 0.88423 0.95663 0.96073 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.43 19.25 29.55 0.57 -1.86 16 2 C -0.18 -2.40 12.20 -37.12 -0.45 -2.85 16 3 C 0.03 0.31 2.32 -93.41 -0.22 0.10 16 4 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.11 -0.92 5.16 -26.73 -0.14 -1.06 16 6 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 7 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 8 C -0.14 -1.55 5.56 -26.76 -0.15 -1.70 16 9 C 0.09 1.30 1.85 -26.76 -0.05 1.25 16 10 H 0.09 1.32 7.16 -51.93 -0.37 0.95 16 11 O -0.36 -5.92 9.50 -39.25 -0.37 -6.29 16 12 C 0.46 8.89 7.93 36.01 0.29 9.17 16 13 O -0.51 -11.18 15.20 -18.75 -0.28 -11.47 16 14 C -0.10 -1.94 5.75 -27.88 -0.16 -2.10 16 15 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 16 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 20 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 24 H 0.22 1.92 7.80 -54.09 -0.42 1.50 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 36 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -32.88 312.71 -6.78 -39.67 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.79 Total: -2.51 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.15 Total: -14.78 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.03 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.66 Total: -17.76 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.88 -6.78 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.539 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds