Wall clock time and date at job start Mon Mar 30 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46952 * 326.45591 * 3 2 1 5 5 C 1.52996 * 109.47098 * 206.45863 * 3 2 1 6 6 C 1.53001 * 109.47486 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46886 * 59.99437 * 6 5 3 8 8 C 1.52996 * 109.47328 * 300.00201 * 7 6 5 9 9 C 1.52997 * 109.47145 * 86.45811 * 3 2 1 10 10 H 1.09001 * 109.47375 * 60.00039 * 9 3 2 11 11 O 1.45206 * 109.46989 * 299.99922 * 9 3 2 12 12 C 1.34229 * 116.99848 * 150.00085 * 11 9 3 13 13 O 1.20823 * 120.00160 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99557 * 179.97438 * 12 11 9 15 15 C 1.53007 * 109.46750 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47104 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99790 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99812 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00008 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47350 * 90.00208 * 20 18 16 22 22 H 1.48505 * 109.47107 * 210.00343 * 20 18 16 23 23 H 1.48509 * 109.47273 * 329.99816 * 20 18 16 24 24 H 4.18740 * 15.03948 * 359.97438 * 4 2 1 25 25 H 1.09001 * 109.46997 * 299.99701 * 5 3 2 26 26 H 1.09000 * 109.47380 * 59.99364 * 5 3 2 27 27 H 1.09002 * 109.47508 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46652 * 299.99782 * 6 5 3 29 29 H 1.09001 * 109.47194 * 60.00677 * 7 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 31 31 H 1.08992 * 109.47554 * 300.00361 * 8 7 6 32 32 H 1.09004 * 109.47108 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46964 * 299.99925 * 14 12 11 34 34 H 1.08993 * 109.46838 * 60.00532 * 14 12 11 35 35 H 1.09001 * 109.46972 * 300.00084 * 15 14 12 36 36 H 1.08996 * 109.47398 * 59.99842 * 15 14 12 37 37 H 0.96999 * 119.99454 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.8557 0.5679 5 6 3.1554 1.2923 0.6427 6 6 4.6854 1.2933 0.6422 7 6 5.1949 1.2047 -0.7978 8 6 4.6856 -0.0870 -1.4404 9 6 3.1560 -0.0882 -1.4397 10 1 2.7923 0.7681 -2.0076 11 8 2.6726 -1.3141 -2.0496 12 6 2.4694 -1.2957 -3.3763 13 8 2.6888 -0.2888 -4.0072 14 6 1.9689 -2.5313 -4.0791 15 6 1.8247 -2.2440 -5.5750 16 6 1.3235 -3.4792 -6.2777 17 1 1.1279 -4.3794 -5.7139 18 6 1.1148 -3.4603 -7.6405 19 7 0.6779 -4.5386 -8.2538 20 14 1.4524 -1.9033 -8.6156 21 1 2.8623 -1.9073 -9.0821 22 1 0.5431 -1.8467 -9.7883 23 1 1.2202 -0.7179 -7.7516 24 1 -1.0500 -0.0004 0.0009 25 1 2.7917 2.1486 0.0748 26 1 2.7920 1.3557 1.6684 27 1 5.0483 2.2137 1.0996 28 1 5.0495 0.4369 1.2098 29 1 4.8309 2.0610 -1.3654 30 1 6.2850 1.2050 -0.7981 31 1 5.0496 -0.9433 -0.8729 32 1 5.0489 -0.1504 -2.4661 33 1 2.6788 -3.3453 -3.9326 34 1 1.0002 -2.8155 -3.6683 35 1 1.1150 -1.4297 -5.7218 36 1 2.7936 -1.9598 -5.9855 37 1 0.5307 -4.5251 -9.2125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851536755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:54 Heat of formation + Delta-G solvation = -83.216182 kcal Electronic energy + Delta-G solvation = -18059.164168 eV Core-core repulsion = 15187.126972 eV Total energy + Delta-G solvation = -2872.037196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79610 -39.56040 -37.16207 -35.65920 -34.54865 -33.48173 -31.37742 -30.83706 -28.37993 -24.59371 -24.22938 -22.99604 -21.42956 -21.00389 -19.41958 -19.21418 -18.44761 -17.35205 -17.24827 -16.30810 -16.00650 -15.59641 -15.23118 -14.96210 -14.85648 -14.54730 -14.16267 -13.91533 -13.66987 -13.40589 -12.98362 -12.73000 -12.47532 -12.27429 -12.12741 -12.05779 -11.85363 -11.82937 -11.59213 -11.51106 -11.44078 -11.36935 -11.00823 -10.86655 -10.80638 -8.33779 -6.38176 1.18185 1.32523 1.34544 1.48445 1.61362 1.81574 1.89334 2.32827 3.01455 3.26419 3.60204 3.69349 3.87297 3.91718 4.11945 4.18277 4.19215 4.34036 4.34561 4.39304 4.41275 4.75357 4.76597 4.79053 4.97290 5.05332 5.11085 5.13337 5.22613 5.25152 5.25600 5.32452 5.37368 5.48367 5.57316 6.19354 6.65383 6.66949 6.78234 7.27058 8.81888 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032870 B = 0.004668 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.648448 B = 5996.551930 C = 6389.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.216 4.216 3 C 0.030 3.970 4 H 0.113 0.887 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.133 4.133 9 C 0.088 3.912 10 H 0.064 0.936 11 O -0.352 6.352 12 C 0.467 3.533 13 O -0.541 6.541 14 C -0.092 4.092 15 C 0.004 3.996 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.941 5.941 20 Si 0.938 3.062 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.242 0.758 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 12.600 21.072 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.216 4.216 3 C 0.012 3.988 4 H 0.131 0.869 5 C -0.140 4.140 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.171 4.171 9 C 0.034 3.966 10 H 0.082 0.918 11 O -0.269 6.269 12 C 0.312 3.688 13 O -0.430 6.430 14 C -0.129 4.129 15 C -0.034 4.034 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.181 4.181 19 N -0.581 5.581 20 Si 0.763 3.237 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 H 0.258 0.742 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.513 12.854 20.752 25.540 hybrid contribution -0.419 0.307 -1.126 1.240 sum 7.094 13.161 19.626 24.672 Atomic orbital electron populations 1.25692 0.96932 1.00111 0.99161 1.23399 0.95135 1.01266 1.01796 1.18532 0.84434 1.02165 0.93708 0.86900 1.21570 0.96934 0.94038 1.01494 1.21605 0.93442 1.04184 0.96065 1.21537 1.01816 0.95404 0.96482 1.21966 0.91996 1.01301 1.01844 1.22938 0.95573 0.85077 0.93030 0.91813 1.86577 1.76987 1.40482 1.22864 1.24331 0.73023 0.90635 0.80763 1.90587 1.49595 1.35715 1.67149 1.21339 1.03821 0.92781 0.95001 1.19302 0.96732 0.95914 0.91417 1.21324 1.44385 0.98016 0.93369 0.93075 1.25782 0.94235 0.99180 0.98943 1.70019 1.47368 1.30240 1.10509 0.85830 0.78892 0.80581 0.78439 1.19087 1.20232 1.18498 0.74186 0.91966 0.89017 0.89174 0.89999 0.92316 0.89344 0.89235 0.92924 0.86772 0.87280 0.96696 0.96513 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.70 19.25 74.32 1.43 -3.27 16 2 C -0.22 -5.42 12.20 31.13 0.38 -5.04 16 3 C 0.03 0.62 2.32 -12.60 -0.03 0.59 16 4 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 5 C -0.10 -1.53 5.16 30.59 0.16 -1.37 16 6 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 7 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 8 C -0.13 -2.88 5.56 30.58 0.17 -2.71 16 9 C 0.09 2.36 1.85 30.58 0.06 2.42 16 10 H 0.06 1.99 7.16 -2.39 -0.02 1.97 16 11 O -0.35 -11.50 9.50 -51.40 -0.49 -11.99 16 12 C 0.47 18.00 7.93 71.24 0.56 18.56 16 13 O -0.54 -23.72 15.20 21.97 0.33 -23.38 16 14 C -0.09 -3.68 5.75 29.85 0.17 -3.51 16 15 C 0.00 0.20 3.33 29.85 0.10 0.29 16 16 C -0.53 -30.78 9.66 25.60 0.25 -30.54 16 17 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 18 C 0.02 0.99 5.47 84.65 0.46 1.45 16 19 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 20 Si 0.94 46.12 27.47 68.60 1.88 48.01 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 24 H 0.24 3.86 7.80 -4.42 -0.03 3.83 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 34 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 35 H 0.01 0.76 7.15 -2.39 -0.02 0.74 16 36 H 0.02 0.83 7.53 -2.39 -0.02 0.82 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -70.79 312.71 7.07 -63.71 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.97 Total: 7.89 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.07 Total: -25.81 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.30 Total: -58.43 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.15 Total: -35.37 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Total: -70.79 7.07 -63.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851536755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds