Wall clock time and date at job start Mon Mar 30 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48504 * 109.47076 * 269.99524 * 3 2 1 5 5 H 1.48492 * 109.47390 * 29.99392 * 3 2 1 6 6 H 1.48507 * 109.47207 * 149.99784 * 3 2 1 7 7 C 1.40327 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.39167 * 119.99863 * 0.02562 * 7 2 1 10 10 O 1.35489 * 126.99124 * 5.73513 * 9 7 2 11 11 C 1.34075 * 107.97533 * 179.97438 * 10 9 7 12 12 N 1.30410 * 110.14196 * 0.02562 * 11 10 9 13 13 C 1.34425 * 109.20351 * 359.97438 * 12 11 10 14 14 C 1.47463 * 126.66798 * 179.97438 * 13 12 11 15 15 C 1.39866 * 120.16935 * 132.71933 * 14 13 12 16 16 C 1.38023 * 119.83000 * 180.02562 * 15 14 13 17 17 F 1.35095 * 119.91204 * 180.02562 * 16 15 14 18 18 C 1.38716 * 120.17643 * 0.02672 * 16 15 14 19 19 C 1.38330 * 120.34987 * 359.97438 * 18 16 15 20 20 C 1.38156 * 120.16558 * 359.67680 * 19 18 16 21 21 F 1.35096 * 120.09223 * 180.32064 * 20 19 18 22 22 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.07997 * 124.92794 * 180.26532 * 11 10 9 24 24 H 1.08001 * 120.08329 * 0.03489 * 15 14 13 25 25 H 1.08003 * 119.82455 * 179.97438 * 18 16 15 26 26 H 1.07993 * 119.91825 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4386 2.6527 0.6999 6 1 3.5388 1.4402 0.7001 7 6 2.0089 -1.2152 0.0005 8 1 3.0889 -1.2152 0.0010 9 6 1.3131 -2.4205 0.0005 10 8 -0.0270 -2.5882 -0.1081 11 6 -0.2842 -3.9033 -0.0648 12 7 0.8264 -4.5741 0.0663 13 6 1.8590 -3.7147 0.1133 14 6 3.2857 -4.0593 0.2561 15 6 4.2381 -3.4720 -0.5831 16 6 5.5715 -3.8000 -0.4437 17 9 6.4929 -3.2333 -1.2530 18 6 5.9681 -4.7101 0.5252 19 6 5.0324 -5.2954 1.3591 20 6 3.6948 -4.9720 1.2368 21 9 2.7830 -5.5397 2.0562 22 1 -0.4850 0.8400 -0.0004 23 1 -1.2681 -4.3434 -0.1328 24 1 3.9310 -2.7635 -1.3381 25 1 7.0129 -4.9630 0.6291 26 1 5.3488 -6.0034 2.1107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075600708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:22 Heat of formation + Delta-G solvation = -88.027228 kcal Electronic energy + Delta-G solvation = -17600.824706 eV Core-core repulsion = 14280.399272 eV Total energy + Delta-G solvation = -3320.425434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.050 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.85495 -49.67036 -42.93831 -39.41605 -35.99123 -35.02406 -32.73829 -31.00689 -30.54873 -27.22736 -24.52779 -23.70340 -22.69774 -21.60896 -19.59303 -18.58582 -18.30625 -17.86539 -17.35744 -16.75210 -16.61820 -16.49054 -16.18977 -15.39592 -15.24727 -15.02907 -14.68094 -14.13093 -13.86988 -13.46554 -13.31303 -13.10469 -12.95440 -12.74837 -12.09118 -11.93254 -11.69219 -11.45348 -10.97085 -10.15752 -9.63857 -9.22308 -8.99451 -6.68732 0.03308 0.14293 1.03260 1.34195 1.51560 1.63406 2.08223 2.11706 2.58589 2.83602 2.99422 3.24456 3.40588 3.71120 3.90805 4.07505 4.31603 4.36840 4.80857 4.88288 4.98813 5.09094 5.16946 5.21407 5.33041 5.51136 5.91164 5.98184 6.19757 6.34869 6.41937 7.54211 8.01083 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.009420 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.677575 B = 2971.726756 C = 4091.153477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.024 3.976 3 Si 1.003 2.997 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.249 1.249 7 C -0.434 4.434 8 H 0.121 0.879 9 C 0.172 3.828 10 O -0.219 6.219 11 C 0.024 3.976 12 N -0.464 5.464 13 C -0.229 4.229 14 C 0.039 3.961 15 C -0.147 4.147 16 C 0.092 3.908 17 F -0.139 7.139 18 C -0.135 4.135 19 C -0.107 4.107 20 C 0.053 3.947 21 F -0.148 7.148 22 H 0.303 0.697 23 H 0.252 0.748 24 H 0.131 0.869 25 H 0.182 0.818 26 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -1.119 0.919 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.197 4.197 3 Si 0.820 3.180 4 H -0.176 1.176 5 H -0.184 1.184 6 H -0.172 1.172 7 C -0.461 4.461 8 H 0.139 0.861 9 C 0.117 3.883 10 O -0.109 6.109 11 C -0.200 4.200 12 N -0.191 5.191 13 C -0.349 4.349 14 C 0.037 3.963 15 C -0.166 4.166 16 C 0.073 3.927 17 F -0.117 7.117 18 C -0.154 4.154 19 C -0.125 4.125 20 C 0.034 3.966 21 F -0.126 7.126 22 H 0.114 0.886 23 H 0.268 0.732 24 H 0.149 0.851 25 H 0.199 0.801 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.655 -1.685 0.951 8.869 hybrid contribution -0.708 1.172 -0.155 1.378 sum 7.947 -0.514 0.796 8.003 Atomic orbital electron populations 1.69768 1.09509 1.32496 1.29534 1.27341 0.95892 1.05793 0.90714 0.84869 0.79012 0.73718 0.80426 1.17613 1.18371 1.17188 1.19255 0.95768 0.87735 1.43354 0.86138 1.20871 0.79615 0.95352 0.92430 1.84766 1.24797 1.27758 1.73594 1.27512 0.99922 0.78033 1.14495 1.69534 0.98838 1.36070 1.14701 1.19751 0.92348 0.88981 1.33857 1.17641 0.90087 0.95031 0.93539 1.21076 0.91315 1.03236 1.01002 1.17551 0.85204 0.97130 0.92837 1.91473 1.64957 1.83688 1.71617 1.21206 1.02161 0.97147 0.94837 1.21126 0.88722 1.01376 1.01314 1.18278 0.87608 0.98629 0.92117 1.91419 1.67476 1.83247 1.70506 0.88601 0.73215 0.85133 0.80114 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.34 12.07 21.90 0.26 -39.08 15 2 C 0.02 1.12 5.50 85.37 0.47 1.59 15 3 Si 1.00 34.44 29.56 68.60 2.03 36.47 15 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 15 6 H -0.25 -8.26 7.11 99.48 0.71 -7.56 15 7 C -0.43 -22.23 8.76 23.00 0.20 -22.03 15 8 H 0.12 5.75 6.46 -2.91 -0.02 5.73 15 9 C 0.17 9.57 6.83 23.15 0.16 9.73 15 10 O -0.22 -12.20 9.17 -12.45 -0.11 -12.32 15 11 C 0.02 1.19 13.14 130.45 1.71 2.90 15 12 N -0.46 -24.66 11.11 -302.01 -3.36 -28.02 15 13 C -0.23 -12.24 6.36 41.84 0.27 -11.97 15 14 C 0.04 1.78 5.71 -20.01 -0.11 1.66 15 15 C -0.15 -5.88 8.52 22.61 0.19 -5.68 15 16 C 0.09 3.00 7.29 22.33 0.16 3.16 15 17 F -0.14 -4.28 17.26 44.97 0.78 -3.51 15 18 C -0.13 -3.55 10.02 22.41 0.22 -3.32 15 19 C -0.11 -3.12 10.01 22.27 0.22 -2.89 15 20 C 0.05 2.17 7.29 22.70 0.17 2.34 15 21 F -0.15 -6.58 16.70 44.97 0.75 -5.83 15 22 H 0.30 13.26 8.29 -92.71 -0.77 12.50 15 23 H 0.25 9.56 8.06 -2.91 -0.02 9.54 15 24 H 0.13 5.41 7.51 -2.91 -0.02 5.39 15 25 H 0.18 3.13 8.06 -2.91 -0.02 3.11 15 26 H 0.18 3.69 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -64.91 253.07 5.26 -59.65 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.24 Total: 17.14 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.66 Total: -24.52 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -3.09 Total: -67.09 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.11 Total: -12.32 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 1.53 Total: -9.33 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -64.91 5.26 -59.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.376 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds