Wall clock time and date at job start Mon Mar 30 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40036 * 120.01554 * 132.05527 * 3 2 1 5 5 C 1.38225 * 120.36608 * 180.02562 * 4 3 2 6 6 C 1.37912 * 120.41020 * 359.97438 * 5 4 3 7 7 Br 1.89104 * 119.98757 * 179.97438 * 6 5 4 8 8 C 1.40878 * 120.02401 * 359.97438 * 6 5 4 9 9 C 1.41386 * 120.18651 * 179.97438 * 8 6 5 10 10 H 1.08008 * 119.99778 * 333.80956 * 9 8 6 11 11 C 1.39929 * 120.00521 * 154.08773 * 9 8 6 12 12 N 1.30835 * 119.99911 * 343.64584 * 11 9 8 13 13 Si 1.86794 * 120.00305 * 163.64586 * 11 9 8 14 14 H 1.48497 * 109.47230 * 90.00111 * 13 11 9 15 15 H 1.48498 * 109.47300 * 210.00210 * 13 11 9 16 16 H 1.48500 * 109.47093 * 329.99786 * 13 11 9 17 17 C 1.39036 * 120.01872 * 312.30864 * 3 2 1 18 18 H 1.08000 * 119.81350 * 0.02562 * 4 3 2 19 19 H 1.08003 * 119.79270 * 179.97438 * 5 4 3 20 20 H 0.97003 * 120.00689 * 185.04149 * 12 11 9 21 21 H 1.08001 * 120.20101 * 0.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.8132 -0.9003 5 6 4.6504 0.8191 -0.9070 6 6 5.3561 0.0256 -0.0270 7 35 7.2470 0.0424 -0.0470 8 6 4.6689 -0.7976 0.8866 9 6 5.3889 -1.6129 1.7899 10 1 6.3859 -1.9450 1.5405 11 6 4.8077 -1.9942 3.0043 12 7 3.7561 -1.3591 3.4542 13 14 5.5332 -3.4101 3.9831 14 1 6.5581 -2.8885 4.9227 15 1 4.4557 -4.0847 4.7506 16 1 6.1626 -4.3829 3.0542 17 6 3.2640 -0.8094 0.8903 18 1 2.7251 1.4387 -1.5933 19 1 5.1810 1.4490 -1.6056 20 1 3.3970 -1.5742 4.3293 21 1 2.7278 -1.4409 1.5832 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238059708.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:00 Heat of formation + Delta-G solvation = 25.656802 kcal Electronic energy + Delta-G solvation = -10446.007990 eV Core-core repulsion = 8332.048165 eV Total energy + Delta-G solvation = -2113.959825 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 250.964 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74858 -37.41752 -35.63451 -32.95353 -31.65992 -30.10006 -27.26584 -23.80638 -23.07824 -20.02263 -18.26918 -16.84933 -16.40904 -15.93975 -15.15355 -14.86151 -14.47083 -13.92462 -13.81044 -13.61748 -13.10719 -12.82776 -12.63852 -12.23770 -11.77563 -11.75257 -11.28591 -11.11739 -10.56185 -9.51465 -9.28245 -8.72245 -6.44415 0.12684 0.91717 1.33718 1.43274 1.48128 1.56794 1.70501 2.05745 2.20720 2.76275 3.14710 3.53036 4.38747 4.55222 4.92932 5.04490 5.24286 5.31055 5.55042 5.78192 5.82880 6.08442 6.39620 6.55836 6.74504 6.78724 8.22686 Molecular weight = 250.96amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.014501 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.351923 B = 1930.495582 C = 3620.249060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.290 3.710 3 C -0.019 4.019 4 C -0.188 4.188 5 C -0.055 4.055 6 C -0.187 4.187 7 Br -0.076 7.076 8 C 0.100 3.900 9 C -0.465 4.465 10 H 0.097 0.903 11 C 0.041 3.959 12 N -0.815 5.815 13 Si 0.975 3.025 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.254 1.254 17 C -0.117 4.117 18 H 0.136 0.864 19 H 0.140 0.860 20 H 0.293 0.707 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 0.729 -3.370 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.023 4.023 3 C -0.023 4.023 4 C -0.210 4.210 5 C -0.075 4.075 6 C -0.268 4.268 7 Br 0.009 6.991 8 C 0.095 3.905 9 C -0.494 4.494 10 H 0.115 0.885 11 C -0.176 4.176 12 N -0.439 5.439 13 Si 0.796 3.204 14 H -0.186 1.186 15 H -0.195 1.195 16 H -0.178 1.178 17 C -0.141 4.141 18 H 0.154 0.846 19 H 0.158 0.842 20 H 0.104 0.896 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.656 0.711 -3.202 6.539 hybrid contribution 0.066 -0.498 0.703 0.864 sum 5.722 0.213 -2.499 6.247 Atomic orbital electron populations 1.81083 1.12853 1.10821 1.10841 1.26185 0.93049 0.91638 0.91450 1.16105 0.82928 1.02411 1.00875 1.20589 0.93351 1.04550 1.02493 1.20700 0.93288 0.96772 0.96741 1.21962 0.88472 1.07890 1.08503 1.96316 1.05700 1.98493 1.98640 1.17521 0.91404 0.90430 0.91108 1.20040 1.02505 1.25713 1.01095 0.88531 1.26732 0.93844 0.97994 0.99047 1.69782 1.19787 1.36038 1.18335 0.85257 0.78836 0.78018 0.78247 1.18575 1.19540 1.17788 1.21354 0.94016 1.00278 0.98416 0.84568 0.84204 0.89616 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.19 18.54 19.00 0.35 -19.83 14 2 C 0.29 11.89 15.32 88.33 1.35 13.24 14 3 C -0.02 -0.79 5.72 -21.41 -0.12 -0.91 14 4 C -0.19 -6.81 9.75 22.70 0.22 -6.59 14 5 C -0.06 -2.01 9.74 22.19 0.22 -1.79 14 6 C -0.19 -7.80 6.28 22.84 0.14 -7.65 14 7 Br -0.08 -2.79 32.07 -20.37 -0.65 -3.44 14 8 C 0.10 4.67 5.56 -21.31 -0.12 4.55 14 9 C -0.47 -21.90 8.43 23.45 0.20 -21.70 14 10 H 0.10 4.41 6.89 -2.91 -0.02 4.39 14 11 C 0.04 1.86 5.15 85.25 0.44 2.29 14 12 N -0.81 -38.62 10.98 21.82 0.24 -38.38 14 13 Si 0.98 34.87 29.59 68.60 2.03 36.90 14 14 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 15 H -0.27 -9.43 7.11 99.48 0.71 -8.72 14 16 H -0.25 -8.92 7.11 99.48 0.71 -8.22 14 17 C -0.12 -5.44 8.38 23.01 0.19 -5.25 14 18 H 0.14 4.12 8.06 -2.91 -0.02 4.10 14 19 H 0.14 4.20 8.06 -2.91 -0.02 4.18 14 20 H 0.29 12.69 8.30 -92.71 -0.77 11.92 14 21 H 0.12 5.69 6.23 -2.91 -0.02 5.67 14 Total: -1.00 -49.36 224.40 5.76 -43.61 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.27 Total: 4.96 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 2.52 Total: -23.81 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.59 Total: -58.22 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 35 Polarization: -2.79 SS G_CDS: -0.65 Total: -3.44 kcal Total: -49.36 5.76 -43.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238059708.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.264 kcal (2) G-P(sol) polarization free energy of solvation -49.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds