Wall clock time and date at job start Mon Mar 30 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99919 * 2 1 4 4 C 1.52997 * 109.47003 * 124.99794 * 3 2 1 5 5 H 1.09002 * 109.78329 * 304.51875 * 4 3 2 6 6 C 1.53235 * 109.62577 * 184.04284 * 4 3 2 7 7 C 1.52952 * 109.41537 * 185.66346 * 6 4 3 8 8 C 1.52961 * 109.82016 * 63.58451 * 7 6 4 9 9 C 1.53233 * 109.41225 * 296.41917 * 8 7 6 10 10 C 1.51266 * 109.62593 * 65.00178 * 4 3 2 11 11 N 1.28011 * 120.85158 * 351.07860 * 10 4 3 12 12 N 1.40102 * 120.00135 * 175.08024 * 11 10 4 13 13 C 1.46503 * 119.99770 * 185.26562 * 12 11 10 14 14 H 1.09000 * 109.46763 * 30.00472 * 13 12 11 15 15 C 1.53000 * 109.47175 * 270.00208 * 13 12 11 16 16 C 1.50702 * 109.46590 * 150.00283 * 13 12 11 17 17 H 1.07996 * 120.00286 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99668 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99881 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99832 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47146 * 89.99998 * 20 18 16 22 22 H 1.48501 * 109.47258 * 209.99648 * 20 18 16 23 23 H 1.48499 * 109.47233 * 330.00240 * 20 18 16 24 24 H 1.08002 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00084 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99894 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47235 * 4.99723 * 3 2 1 28 28 H 1.09000 * 109.47213 * 244.99840 * 3 2 1 29 29 H 1.08998 * 109.48103 * 305.64252 * 6 4 3 30 30 H 1.09004 * 109.47776 * 65.66612 * 6 4 3 31 31 H 1.08997 * 109.40992 * 303.47797 * 7 6 4 32 32 H 1.09009 * 109.42146 * 183.69022 * 7 6 4 33 33 H 1.08999 * 109.48797 * 176.43761 * 8 7 6 34 34 H 1.08994 * 109.48631 * 56.39874 * 8 7 6 35 35 H 1.08998 * 109.62919 * 174.33332 * 9 8 7 36 36 H 1.09006 * 109.62467 * 294.71677 * 9 8 7 37 37 H 0.96995 * 119.99889 * 5.27368 * 12 11 10 38 38 H 1.09000 * 109.46652 * 60.00459 * 15 13 12 39 39 H 1.09000 * 109.46824 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.47186 * 300.00216 * 15 13 12 41 41 H 0.96998 * 119.99289 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4919 1.1559 2.1100 6 6 3.7299 2.6974 1.2444 7 6 4.7998 2.6732 2.3371 8 6 5.8827 1.6535 1.9802 9 6 5.2688 0.2499 1.9451 10 6 4.0895 0.2644 0.9978 11 7 3.9868 -0.6055 0.0642 12 7 5.0227 -1.5229 -0.1554 13 6 4.9578 -2.4420 -1.2945 14 1 4.4029 -1.9741 -2.1077 15 6 4.2510 -3.7309 -0.8702 16 6 6.3544 -2.7646 -1.7597 17 1 7.2052 -2.3290 -1.2569 18 6 6.5460 -3.6160 -2.8272 19 7 5.5099 -4.1468 -3.4391 20 14 8.2771 -4.0165 -3.4034 21 1 8.7754 -5.2133 -2.6791 22 1 8.2619 -4.2917 -4.8626 23 1 9.1703 -2.8629 -3.1265 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.1969 2.9120 0.2832 30 1 2.9949 3.4695 1.4720 31 1 4.3415 2.3975 3.2868 32 1 5.2491 3.6624 2.4265 33 1 6.6736 1.6857 2.7296 34 1 6.2990 1.8926 1.0017 35 1 6.0119 -0.4660 1.5939 36 1 4.9356 -0.0290 2.9448 37 1 5.7827 -1.5496 0.4466 38 1 3.2408 -3.4974 -0.5337 39 1 4.2031 -4.4149 -1.7175 40 1 4.8058 -4.1987 -0.0569 41 1 5.6447 -4.7454 -4.1903 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853323607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:54 Heat of formation + Delta-G solvation = 39.276547 kcal Electronic energy + Delta-G solvation = -18768.734900 eV Core-core repulsion = 16070.135234 eV Total energy + Delta-G solvation = -2698.599667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.93652 -35.75485 -34.70586 -33.64028 -31.23259 -30.98155 -28.41284 -26.43155 -25.25182 -24.99299 -21.89870 -21.05205 -20.15572 -19.21622 -18.45999 -16.76842 -15.77279 -15.33486 -14.88930 -14.40889 -14.09218 -13.69892 -13.44718 -13.17034 -13.07592 -12.46483 -12.44775 -12.12709 -11.81813 -11.33253 -11.27093 -11.04486 -10.99870 -10.89983 -10.80098 -10.66618 -10.34423 -10.28769 -10.23349 -10.14218 -9.84740 -9.12285 -8.92550 -8.76205 -8.47187 -6.75252 -6.09684 -4.17335 2.70946 3.03265 3.25552 3.32151 3.35003 3.99770 4.40718 4.83754 4.94216 5.00877 5.21841 5.22691 5.26870 5.49224 5.57395 5.63093 5.64655 5.75126 5.78959 5.93714 5.98654 6.07365 6.12195 6.18537 6.26410 6.38167 6.41603 6.55015 6.64359 6.83878 7.05049 7.06920 7.22061 7.22414 7.27906 7.63839 7.86990 7.94073 8.25165 8.42761 8.92985 9.49209 9.56074 10.96114 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.005933 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.409497 B = 4717.842863 C = 5635.078216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.123 4.123 3 C -0.080 4.080 4 C -0.007 4.007 5 H 0.075 0.925 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.110 4.110 9 C -0.104 4.104 10 C -0.001 4.001 11 N -0.204 5.204 12 N -0.642 5.642 13 C 0.301 3.699 14 H 0.038 0.962 15 C -0.150 4.150 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.366 0.634 38 H 0.010 0.990 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 11.356 9.982 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.141 4.141 3 C -0.118 4.118 4 C -0.027 4.027 5 H 0.093 0.907 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.195 4.195 11 N -0.013 5.013 12 N -0.381 5.381 13 C 0.198 3.802 14 H 0.056 0.944 15 C -0.209 4.209 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.204 0.796 38 H 0.029 0.971 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.716 10.750 8.902 14.733 hybrid contribution 1.823 -0.333 0.486 1.916 sum -2.893 10.417 9.388 14.319 Atomic orbital electron populations 1.23711 0.96098 1.00850 1.05702 1.23309 0.95364 0.99897 0.95521 1.20675 0.97247 0.95017 0.98834 1.19852 0.92726 0.91692 0.98442 0.90652 1.21610 0.97698 0.96059 0.99444 1.21472 0.96515 0.98673 0.98703 1.21469 0.97405 0.94465 1.01526 1.20965 0.96924 0.97487 0.99040 1.24084 0.98379 0.98504 0.98571 1.73446 1.13655 0.98596 1.15590 1.48973 1.18299 1.38035 1.32776 1.18398 0.95690 0.84059 0.82014 0.94422 1.22205 0.96116 1.01441 1.01133 1.21250 0.91837 1.28140 1.15402 0.92425 1.24857 0.97280 0.95502 0.96046 1.69899 1.29261 1.31302 1.21987 0.86462 0.84151 0.78670 0.77904 1.20589 1.21053 1.19936 0.89519 0.89178 0.85622 0.92248 0.90491 0.91678 0.91831 0.92071 0.92304 0.92352 0.91923 0.91553 0.91346 0.79581 0.97066 0.89417 0.95770 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.14 14.32 29.01 0.42 -2.72 16 2 C -0.12 -1.93 8.77 -36.02 -0.32 -2.24 16 3 C -0.08 -1.13 4.82 -27.88 -0.13 -1.26 16 4 C -0.01 -0.09 2.47 -91.37 -0.23 -0.31 16 5 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.11 -1.22 5.23 -26.63 -0.14 -1.36 16 7 C -0.12 -1.21 5.81 -26.78 -0.16 -1.36 16 8 C -0.11 -1.34 5.94 -26.63 -0.16 -1.50 16 9 C -0.10 -1.50 5.92 -27.48 -0.16 -1.67 16 10 C 0.00 -0.02 6.22 -78.35 -0.49 -0.51 16 11 N -0.20 -4.08 8.22 35.87 0.29 -3.79 16 12 N -0.64 -14.36 5.99 -5.88 -0.04 -14.39 16 13 C 0.30 7.79 3.23 -69.08 -0.22 7.56 16 14 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.15 -3.76 9.29 37.16 0.35 -3.42 16 16 C -0.53 -14.39 8.74 -34.44 -0.30 -14.69 16 17 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 19 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.09 1.04 7.84 -52.49 -0.41 0.63 16 25 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.13 2.34 6.28 -52.49 -0.33 2.02 16 27 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 28 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.06 5.57 -51.93 -0.29 0.77 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.37 7.76 6.07 -182.60 -1.11 6.65 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -27.99 323.87 -8.79 -36.77 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.90 Total: 6.71 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.64 Total: -21.77 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.89 Total: -42.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.99 -8.79 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853323607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.051 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds