Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38216 * 120.01247 * 2 1 4 4 C 1.38226 * 120.02378 * 179.76713 * 3 2 1 5 5 C 1.38262 * 120.05117 * 0.51023 * 4 3 2 6 6 C 1.50700 * 119.99004 * 179.76762 * 5 4 3 7 7 H 1.08999 * 109.47788 * 199.72697 * 6 5 4 8 8 C 1.53005 * 109.47104 * 79.72002 * 6 5 4 9 9 N 1.46501 * 109.46936 * 319.72724 * 6 5 4 10 10 C 1.34779 * 120.00164 * 204.99666 * 9 6 5 11 11 O 1.21688 * 119.99824 * 0.02562 * 10 9 6 12 12 C 1.46371 * 120.00201 * 179.97438 * 10 9 6 13 13 H 1.08002 * 119.99914 * 353.66899 * 12 10 9 14 14 C 1.40045 * 120.00228 * 173.93697 * 12 10 9 15 15 N 1.30681 * 119.99689 * 6.15839 * 14 12 10 16 16 Si 1.86796 * 120.00384 * 186.15291 * 14 12 10 17 17 H 1.48502 * 109.47042 * 94.98532 * 16 14 12 18 18 H 1.48498 * 109.47314 * 214.98742 * 16 14 12 19 19 H 1.48499 * 109.47098 * 334.98560 * 16 14 12 20 20 C 1.38179 * 120.02640 * 359.48831 * 5 4 3 21 21 C 1.38438 * 120.01278 * 180.02562 * 2 1 3 22 22 F 1.35099 * 120.02543 * 359.95829 * 21 2 1 23 23 H 1.08994 * 109.47163 * 269.97197 * 1 2 3 24 24 H 1.08997 * 109.47023 * 29.97979 * 1 2 3 25 25 H 1.09005 * 109.46748 * 149.97502 * 1 2 3 26 26 H 1.07993 * 119.98582 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.97346 * 180.26048 * 4 3 2 28 28 H 1.09008 * 109.46850 * 60.00800 * 8 6 5 29 29 H 1.08997 * 109.46984 * 179.97438 * 8 6 5 30 30 H 1.08992 * 109.47591 * 300.00652 * 8 6 5 31 31 H 0.97003 * 119.99755 * 24.99562 * 9 6 5 32 32 H 0.97000 * 119.99932 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.01386 * 180.27275 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1971 0.0049 5 6 4.2732 0.0005 -0.0009 6 6 5.7802 0.0025 -0.0009 7 1 6.1449 -0.9627 -0.3524 8 6 6.2899 0.2537 1.4197 9 7 6.2672 1.0612 -0.8887 10 6 7.4893 0.9625 -1.4483 11 8 8.1881 -0.0064 -1.2165 12 6 7.9756 2.0200 -2.3357 13 1 7.3189 2.8277 -2.6237 14 6 9.2907 1.9817 -2.8157 15 7 10.0455 0.9434 -2.5711 16 14 9.9657 3.4146 -3.8059 17 1 10.6980 4.3388 -2.9031 18 1 10.8918 2.9035 -4.8482 19 1 8.8439 4.1408 -4.4536 20 6 3.5843 -1.1972 -0.0009 21 6 2.1995 -1.1988 -0.0005 22 9 1.5247 -2.3692 -0.0002 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.6584 2.1321 0.0004 27 1 4.1199 2.1327 0.0091 28 1 5.9277 -0.5342 2.0803 29 1 7.3799 0.2546 1.4198 30 1 5.9253 1.2188 1.7712 31 1 5.7100 1.8334 -1.0737 32 1 10.9565 0.9170 -2.9033 33 1 4.1255 -2.1318 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094956708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -74.088150 kcal Electronic energy + Delta-G solvation = -17742.648597 eV Core-core repulsion = 14682.121007 eV Total energy + Delta-G solvation = -3060.527590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84636 -39.48001 -37.34252 -34.69644 -32.55284 -31.87460 -30.47410 -29.55150 -26.64650 -26.10630 -22.87457 -22.74374 -20.80237 -19.30478 -17.71558 -16.65275 -16.38155 -15.66465 -15.62056 -15.25229 -14.52644 -14.24747 -13.75290 -13.54551 -13.33943 -13.13562 -13.02652 -12.50678 -12.33043 -12.11926 -11.67327 -11.62832 -11.36623 -11.19405 -10.99142 -10.85547 -10.51835 -10.35741 -10.21210 -8.87270 -8.81336 -8.45665 -7.63506 -7.57233 -6.21105 -4.65492 1.21464 1.27273 3.13066 3.20447 3.23824 3.61744 4.08879 4.25888 4.56670 4.65525 4.73927 4.87466 5.02329 5.15756 5.38649 5.44534 5.54180 5.66055 5.69437 5.82298 5.97788 6.02652 6.10149 6.14020 6.27626 6.38260 6.38950 6.71576 6.80985 6.97968 7.42399 7.89377 8.06037 8.31039 9.01161 9.49723 10.57729 10.76011 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.036280 B = 0.004711 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.597202 B = 5941.626978 C = 6253.159352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.091 4.091 4 C -0.118 4.118 5 C -0.049 4.049 6 C 0.187 3.813 7 H 0.086 0.914 8 C -0.152 4.152 9 N -0.760 5.760 10 C 0.556 3.444 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.143 4.143 21 C 0.095 3.905 22 F -0.142 7.142 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.380 0.620 32 H 0.268 0.732 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 0.990 5.429 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.133 4.133 3 C -0.109 4.109 4 C -0.136 4.136 5 C -0.050 4.050 6 C 0.081 3.919 7 H 0.104 0.896 8 C -0.211 4.211 9 N -0.416 5.416 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.396 5.396 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.162 4.162 21 C 0.075 3.925 22 F -0.121 7.121 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.212 0.788 32 H 0.079 0.921 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.664 0.118 5.564 15.685 hybrid contribution -0.030 0.850 -0.571 1.025 sum -14.694 0.969 4.993 15.549 Atomic orbital electron populations 1.20679 0.90502 1.03064 1.02451 1.19863 0.96742 0.92061 1.04598 1.20872 0.93985 0.96824 0.99248 1.21075 0.93826 0.98345 1.00388 1.20134 0.96659 0.92223 0.95939 1.19425 0.86225 0.95056 0.91213 0.89574 1.22157 1.02636 1.00619 0.95685 1.46304 1.20245 1.22992 1.52046 1.18225 0.78483 0.87214 0.80044 1.90598 1.56050 1.34067 1.65492 1.20874 0.97817 1.09348 1.30253 0.91413 1.25694 0.96738 0.95840 0.94866 1.70029 1.07249 1.26608 1.35686 0.86369 0.79211 0.81639 0.79600 1.19802 1.20462 1.18897 1.21024 0.91955 0.99604 1.03662 1.17480 0.89896 0.80796 1.04282 1.91455 1.80374 1.46201 1.94056 0.91140 0.91135 0.91455 0.85199 0.85104 0.93091 0.91262 0.93075 0.78769 0.92110 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.84 36.01 0.35 -0.68 16 2 C -0.13 -1.61 5.89 -104.56 -0.62 -2.23 16 3 C -0.09 -1.07 9.70 -39.59 -0.38 -1.46 16 4 C -0.12 -1.60 9.05 -39.58 -0.36 -1.96 16 5 C -0.05 -0.76 4.95 -104.63 -0.52 -1.28 16 6 C 0.19 3.53 2.78 -69.08 -0.19 3.34 16 7 H 0.09 1.83 7.44 -51.93 -0.39 1.45 16 8 C -0.15 -2.64 9.46 37.16 0.35 -2.29 16 9 N -0.76 -16.57 5.02 -56.34 -0.28 -16.85 16 10 C 0.56 15.51 7.71 -12.99 -0.10 15.41 16 11 O -0.58 -18.37 14.71 5.20 0.08 -18.30 16 12 C -0.55 -15.23 9.53 -35.63 -0.34 -15.57 16 13 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 14 C 0.09 2.45 5.49 -17.36 -0.10 2.35 16 15 N -0.77 -22.82 11.85 55.55 0.66 -22.16 16 16 Si 0.91 19.96 29.56 -169.99 -5.03 14.93 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.14 -2.12 9.65 -39.51 -0.38 -2.51 16 21 C 0.09 1.32 7.24 -39.42 -0.29 1.03 16 22 F -0.14 -1.99 16.48 2.25 0.04 -1.95 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.63 7.64 -51.93 -0.40 0.24 16 26 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.13 1.65 6.93 -52.49 -0.36 1.29 16 28 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.38 7.28 6.86 -40.82 -0.28 7.00 16 32 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 33 H 0.14 1.90 8.04 -52.49 -0.42 1.47 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -33.05 291.99 -6.63 -39.67 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.93 Total: 6.07 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.56 Total: -5.82 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.38 Total: -39.01 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.08 Total: -18.30 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.05 -6.63 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094956708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.413 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds