Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38216 * 120.01247 * 2 1 4 4 C 1.38226 * 120.02378 * 179.76713 * 3 2 1 5 5 C 1.38262 * 120.05117 * 0.51023 * 4 3 2 6 6 C 1.50700 * 119.99004 * 179.76762 * 5 4 3 7 7 H 1.08999 * 109.47788 * 199.72697 * 6 5 4 8 8 C 1.53005 * 109.47104 * 79.72002 * 6 5 4 9 9 N 1.46501 * 109.46936 * 319.72724 * 6 5 4 10 10 C 1.34779 * 120.00164 * 204.99666 * 9 6 5 11 11 O 1.21688 * 119.99824 * 0.02562 * 10 9 6 12 12 C 1.46371 * 120.00201 * 179.97438 * 10 9 6 13 13 H 1.08002 * 119.99914 * 353.66899 * 12 10 9 14 14 C 1.40045 * 120.00228 * 173.93697 * 12 10 9 15 15 N 1.30681 * 119.99689 * 6.15839 * 14 12 10 16 16 Si 1.86796 * 120.00384 * 186.15291 * 14 12 10 17 17 H 1.48502 * 109.47042 * 94.98532 * 16 14 12 18 18 H 1.48498 * 109.47314 * 214.98742 * 16 14 12 19 19 H 1.48499 * 109.47098 * 334.98560 * 16 14 12 20 20 C 1.38179 * 120.02640 * 359.48831 * 5 4 3 21 21 C 1.38438 * 120.01278 * 180.02562 * 2 1 3 22 22 F 1.35099 * 120.02543 * 359.95829 * 21 2 1 23 23 H 1.08994 * 109.47163 * 269.97197 * 1 2 3 24 24 H 1.08997 * 109.47023 * 29.97979 * 1 2 3 25 25 H 1.09005 * 109.46748 * 149.97502 * 1 2 3 26 26 H 1.07993 * 119.98582 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.97346 * 180.26048 * 4 3 2 28 28 H 1.09008 * 109.46850 * 60.00800 * 8 6 5 29 29 H 1.08997 * 109.46984 * 179.97438 * 8 6 5 30 30 H 1.08992 * 109.47591 * 300.00652 * 8 6 5 31 31 H 0.97003 * 119.99755 * 24.99562 * 9 6 5 32 32 H 0.97000 * 119.99932 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.01386 * 180.27275 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1971 0.0049 5 6 4.2732 0.0005 -0.0009 6 6 5.7802 0.0025 -0.0009 7 1 6.1449 -0.9627 -0.3524 8 6 6.2899 0.2537 1.4197 9 7 6.2672 1.0612 -0.8887 10 6 7.4893 0.9625 -1.4483 11 8 8.1881 -0.0064 -1.2165 12 6 7.9756 2.0200 -2.3357 13 1 7.3189 2.8277 -2.6237 14 6 9.2907 1.9817 -2.8157 15 7 10.0455 0.9434 -2.5711 16 14 9.9657 3.4146 -3.8059 17 1 10.6980 4.3388 -2.9031 18 1 10.8918 2.9035 -4.8482 19 1 8.8439 4.1408 -4.4536 20 6 3.5843 -1.1972 -0.0009 21 6 2.1995 -1.1988 -0.0005 22 9 1.5247 -2.3692 -0.0002 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.6584 2.1321 0.0004 27 1 4.1199 2.1327 0.0091 28 1 5.9277 -0.5342 2.0803 29 1 7.3799 0.2546 1.4198 30 1 5.9253 1.2188 1.7712 31 1 5.7100 1.8334 -1.0737 32 1 10.9565 0.9170 -2.9033 33 1 4.1255 -2.1318 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094956708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -95.575523 kcal Electronic energy + Delta-G solvation = -17743.580359 eV Core-core repulsion = 14682.121007 eV Total energy + Delta-G solvation = -3061.459353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.92784 -40.71908 -39.17759 -36.30485 -34.58330 -33.31405 -31.51933 -31.16343 -28.18485 -27.67268 -24.14329 -23.92942 -22.26542 -21.01008 -19.50906 -17.99799 -17.70251 -17.29357 -16.72756 -16.60991 -16.07479 -15.90457 -15.13509 -14.97550 -14.50281 -14.37566 -14.25580 -14.10581 -13.62546 -13.35923 -13.29678 -12.95058 -12.77273 -12.61819 -12.57947 -12.40880 -12.27321 -11.99240 -11.72261 -10.92279 -9.90747 -9.85490 -9.55500 -9.44476 -8.28838 -6.84124 0.13515 0.21291 1.41539 1.42450 1.58398 2.25321 2.47320 2.55811 3.01737 3.29970 3.58106 3.65913 3.77832 3.94573 4.16934 4.29264 4.33615 4.48280 4.67260 4.70466 4.79067 4.83394 4.94363 5.06354 5.13399 5.21574 5.29119 5.33819 5.39133 5.50907 5.89310 5.93097 6.23595 6.28585 6.88230 7.55289 8.50374 8.68377 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.036280 B = 0.004711 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.597202 B = 5941.626978 C = 6253.159352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.118 4.118 5 C -0.065 4.065 6 C 0.189 3.811 7 H 0.050 0.950 8 C -0.143 4.143 9 N -0.746 5.746 10 C 0.540 3.460 11 O -0.630 6.630 12 C -0.574 4.574 13 H 0.088 0.912 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.997 3.003 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.247 1.247 20 C -0.155 4.155 21 C 0.080 3.920 22 F -0.145 7.145 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.169 0.831 27 H 0.141 0.859 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.661 3.556 5.184 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.137 4.137 5 C -0.066 4.066 6 C 0.083 3.917 7 H 0.068 0.932 8 C -0.202 4.202 9 N -0.401 5.401 10 C 0.345 3.655 11 O -0.517 6.517 12 C -0.610 4.610 13 H 0.106 0.894 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.171 1.171 20 C -0.174 4.174 21 C 0.061 3.939 22 F -0.124 7.124 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.186 0.814 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.040 2.698 5.341 18.060 hybrid contribution 0.563 -0.006 -0.448 0.720 sum -16.477 2.692 4.893 17.397 Atomic orbital electron populations 1.20787 0.88089 1.04111 1.03723 1.20295 0.98515 0.91342 1.02298 1.21244 0.93098 0.98159 0.97365 1.21239 0.94943 0.97653 0.99834 1.19752 0.94232 0.93625 0.99010 1.19392 0.88888 0.92333 0.91094 0.93188 1.22046 1.00085 1.02678 0.95359 1.45938 1.18699 1.24028 1.51474 1.18592 0.79781 0.86762 0.80401 1.90554 1.58052 1.35874 1.67251 1.21428 0.98988 1.09921 1.30693 0.89359 1.26961 0.96778 0.99063 0.95737 1.70199 1.07982 1.29593 1.37392 0.85011 0.78667 0.77027 0.77611 1.18744 1.19959 1.17060 1.21019 0.92791 0.99301 1.04325 1.17621 0.89563 0.81551 1.05162 1.91445 1.80238 1.46538 1.94165 0.89619 0.88811 0.91761 0.81390 0.84078 0.90716 0.95010 0.91027 0.77032 0.91623 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.84 71.24 0.70 -0.94 16 2 C -0.12 -2.64 5.89 -19.82 -0.12 -2.76 16 3 C -0.08 -1.59 9.70 22.26 0.22 -1.38 16 4 C -0.12 -2.94 9.05 22.27 0.20 -2.74 16 5 C -0.07 -2.02 4.95 -19.87 -0.10 -2.12 16 6 C 0.19 7.37 2.78 44.25 0.12 7.49 16 7 H 0.05 2.30 7.44 -2.39 -0.02 2.28 16 8 C -0.14 -5.08 9.46 71.98 0.68 -4.40 16 9 N -0.75 -33.17 5.02 -450.39 -2.26 -35.43 16 10 C 0.54 31.22 7.71 86.36 0.67 31.88 16 11 O -0.63 -42.22 14.71 -4.31 -0.06 -42.28 16 12 C -0.57 -32.31 9.53 24.83 0.24 -32.07 16 13 H 0.09 4.43 7.86 -2.91 -0.02 4.41 16 14 C 0.03 1.65 5.49 85.30 0.47 2.12 16 15 N -0.82 -50.45 11.85 21.84 0.26 -50.19 16 16 Si 1.00 40.68 29.56 68.60 2.03 42.71 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 20 C -0.16 -4.62 9.65 22.31 0.22 -4.41 16 21 C 0.08 2.14 7.24 22.37 0.16 2.30 16 22 F -0.15 -3.93 16.48 44.97 0.74 -3.19 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.06 1.02 7.64 -2.38 -0.02 1.00 16 26 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.14 3.17 6.93 -2.91 -0.02 3.15 16 28 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.39 14.92 6.86 -92.71 -0.64 14.29 16 32 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 33 H 0.13 3.85 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -75.15 291.99 4.65 -70.50 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.49 Total: 24.88 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 3.46 Total: -7.01 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.00 Total: -85.62 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.06 Total: -42.28 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -75.15 4.65 -70.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094956708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.077 kcal (2) G-P(sol) polarization free energy of solvation -75.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds