Wall clock time and date at job start Mon Mar 30 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 C 1.53000 * 109.47141 * 119.99899 * 2 1 3 5 5 C 1.50699 * 109.47077 * 65.00298 * 4 2 1 6 6 N 1.29523 * 124.56852 * 89.96832 * 5 4 2 7 7 C 1.30666 * 117.63799 * 179.97438 * 6 5 4 8 8 C 1.50699 * 123.22578 * 180.27070 * 7 6 5 9 9 C 1.52996 * 117.50109 * 8.33584 * 8 7 6 10 10 C 1.52998 * 117.49994 * 299.70790 * 8 7 6 11 11 C 1.38595 * 113.54858 * 0.02562 * 7 6 5 12 12 C 1.40038 * 126.25294 * 180.02562 * 11 7 6 13 13 H 1.08006 * 120.00206 * 359.97438 * 12 11 7 14 14 C 1.40075 * 120.00143 * 180.02562 * 12 11 7 15 15 N 1.30870 * 119.99633 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47391 * 59.99539 * 16 14 12 18 18 H 1.48504 * 109.47208 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47136 * 299.99356 * 16 14 12 20 20 S 1.70891 * 124.55969 * 269.97504 * 5 4 2 21 21 H 1.09002 * 109.47567 * 59.99804 * 1 2 3 22 22 H 1.09003 * 109.47526 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47252 * 300.00157 * 1 2 3 24 24 H 1.08995 * 109.46975 * 240.00110 * 2 1 3 25 25 H 1.08990 * 109.47403 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46945 * 300.00577 * 3 2 1 27 27 H 1.09007 * 109.47070 * 59.99731 * 3 2 1 28 28 H 1.08992 * 109.47300 * 305.00076 * 4 2 1 29 29 H 1.09004 * 109.46957 * 184.99535 * 4 2 1 30 30 H 1.09010 * 115.54837 * 154.03902 * 8 7 6 31 31 H 1.08999 * 117.49424 * 359.97438 * 9 8 7 32 32 H 1.08998 * 117.50391 * 145.02018 * 9 8 7 33 33 H 1.09006 * 117.49552 * 214.97767 * 10 8 7 34 34 H 1.08992 * 117.50163 * 359.97438 * 10 8 7 35 35 H 0.97001 * 119.99679 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 7 2.3581 -3.1105 0.6545 7 6 1.8805 -4.3266 0.6777 8 6 2.6101 -5.5113 0.0988 9 6 4.0518 -5.2954 -0.3653 10 6 2.9358 -5.4791 -1.3958 11 6 0.6412 -4.4232 1.2904 12 6 -0.1093 -5.5931 1.4612 13 1 0.2708 -6.5364 1.0975 14 6 -1.3533 -5.5399 2.1027 15 7 -1.8141 -4.3968 2.5429 16 14 -2.3540 -7.1005 2.3312 17 1 -1.5755 -8.0740 3.1383 18 1 -3.6217 -6.7773 3.0338 19 1 -2.6602 -7.6910 1.0034 20 16 0.1827 -2.8050 1.8161 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 2.3621 -6.4772 0.5392 31 1 4.4725 -4.2963 -0.2523 32 1 4.7528 -6.1191 -0.2304 33 1 2.9026 -6.4238 -1.9386 34 1 2.6221 -4.6012 -1.9604 35 1 -2.6754 -4.3600 2.9875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082436310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:00 Heat of formation + Delta-G solvation = 15.578317 kcal Electronic energy + Delta-G solvation = -16248.988224 eV Core-core repulsion = 13758.562039 eV Total energy + Delta-G solvation = -2490.426185 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.13387 -36.08497 -34.88320 -34.11061 -29.87656 -27.71030 -26.66376 -24.63743 -22.61003 -21.49985 -20.84305 -19.28223 -18.61159 -16.76867 -15.69907 -15.47050 -14.58775 -14.26852 -13.83821 -13.55786 -13.23321 -12.70581 -12.27268 -11.95631 -11.87842 -11.79228 -11.50101 -11.37628 -11.02540 -10.90382 -10.72123 -10.60136 -10.35437 -10.23112 -10.07009 -9.79449 -9.68464 -9.45777 -9.05682 -7.79394 -7.70732 -7.01743 -6.94445 -4.53990 2.50141 2.88512 2.92092 3.05369 3.46034 3.63407 4.02294 4.13810 4.69478 5.19523 5.44932 5.47053 5.52638 5.69880 5.89812 5.92404 6.03067 6.11549 6.17780 6.24723 6.28531 6.35359 6.39000 6.52558 6.60267 6.69202 6.73930 6.89217 6.94926 6.96741 6.99404 7.13966 7.33057 7.73247 7.95488 8.35424 8.37058 9.75377 9.84083 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.008601 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.131491 B = 3254.769011 C = 4471.361586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.000 4.000 5 C -0.173 4.173 6 N -0.424 5.424 7 C -0.120 4.120 8 C -0.022 4.022 9 C -0.181 4.181 10 C -0.187 4.187 11 C 0.004 3.996 12 C -0.367 4.367 13 H 0.097 0.903 14 C 0.049 3.951 15 N -0.774 5.774 16 Si 0.935 3.065 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.260 1.260 20 S 0.126 5.874 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 2.303 -1.424 2.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.041 4.041 5 C -0.443 4.443 6 N -0.136 5.136 7 C -0.254 4.254 8 C -0.042 4.042 9 C -0.218 4.218 10 C -0.224 4.224 11 C -0.120 4.120 12 C -0.404 4.404 13 H 0.115 0.885 14 C -0.173 4.173 15 N -0.401 5.401 16 Si 0.758 3.242 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.185 1.185 20 S 0.379 5.621 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.004 3.161 -1.012 3.319 hybrid contribution -0.048 -1.403 -0.273 1.430 sum -0.053 1.759 -1.285 2.179 Atomic orbital electron populations 1.21913 0.95467 1.02968 1.00197 1.21087 0.95941 0.94614 0.99242 1.21845 1.00524 0.96781 1.00967 1.19614 0.99443 0.88902 0.96158 1.25720 1.02337 0.98038 1.18213 1.64860 1.34255 0.99690 1.14762 1.18886 0.96469 0.90916 1.19097 1.19828 0.94771 0.95773 0.93866 1.22789 0.91852 1.02069 1.05121 1.22870 1.04848 1.01404 0.93317 1.23007 0.95512 0.96424 0.97020 1.19134 0.99438 0.94580 1.27250 0.88515 1.26218 0.98314 0.98875 0.93858 1.69005 1.18919 1.26211 1.25973 0.85869 0.78369 0.80135 0.79837 1.18488 1.19836 1.18471 1.83996 1.18662 1.00233 1.59205 0.93953 0.91194 0.93302 0.91565 0.93149 0.93367 0.93082 0.92577 0.92280 0.88500 0.88695 0.90486 0.90321 0.89738 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.88 37.16 0.33 -2.23 16 2 C -0.09 -1.56 2.91 -90.62 -0.26 -1.82 16 3 C -0.14 -2.01 9.19 37.16 0.34 -1.67 16 4 C 0.00 -0.01 5.26 -27.88 -0.15 -0.15 16 5 C -0.17 -4.13 5.99 -13.25 -0.08 -4.21 16 6 N -0.42 -10.79 9.81 -7.08 -0.07 -10.86 16 7 C -0.12 -3.06 6.52 -82.96 -0.54 -3.60 16 8 C -0.02 -0.48 5.78 -91.78 -0.53 -1.01 16 9 C -0.18 -3.53 10.09 -26.73 -0.27 -3.80 16 10 C -0.19 -3.66 10.23 -26.73 -0.27 -3.93 16 11 C 0.00 0.10 6.25 -38.78 -0.24 -0.14 16 12 C -0.37 -9.14 8.99 -38.22 -0.34 -9.48 16 13 H 0.10 2.27 7.00 -52.48 -0.37 1.90 16 14 C 0.05 1.13 5.50 -17.27 -0.09 1.03 16 15 N -0.77 -18.33 10.76 55.56 0.60 -17.73 16 16 Si 0.93 17.22 29.56 -169.99 -5.03 12.20 16 17 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 18 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 S 0.13 3.10 18.67 -107.50 -2.01 1.10 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.41 6.13 -51.93 -0.32 1.09 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.10 2.05 7.38 -51.92 -0.38 1.67 16 31 H 0.09 1.99 7.75 -51.93 -0.40 1.59 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.30 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -26.81 301.83 -9.32 -36.13 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.26 Total: 5.63 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: -2.11 Total: -31.01 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.53 Total: -28.59 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.01 Total: 1.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.81 -9.32 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082436310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.711 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds