Wall clock time and date at job start Mon Mar 30 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47164 * 2 1 4 4 H 1.09001 * 109.47244 * 181.72212 * 3 2 1 5 5 C 1.50696 * 109.47199 * 301.72592 * 3 2 1 6 6 H 1.08000 * 120.00338 * 119.99765 * 5 3 2 7 7 C 1.37881 * 120.00145 * 300.00000 * 5 3 2 8 8 N 1.31515 * 119.99669 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00183 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47249 * 59.99848 * 9 7 5 11 11 H 1.48500 * 109.47223 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47120 * 300.00108 * 9 7 5 13 13 N 1.46906 * 109.47015 * 61.72589 * 3 2 1 14 14 C 1.46902 * 110.99938 * 66.72798 * 13 3 2 15 15 C 1.53000 * 109.46948 * 216.35832 * 14 13 3 16 16 F 1.39907 * 109.46763 * 53.22985 * 15 14 13 17 17 F 1.39899 * 109.46874 * 173.22792 * 15 14 13 18 18 F 1.39895 * 109.47433 * 293.23162 * 15 14 13 19 19 C 1.46901 * 110.99755 * 190.67939 * 13 3 2 20 20 C 1.53000 * 117.49905 * 227.97249 * 19 13 3 21 21 C 1.52997 * 117.49568 * 159.31232 * 19 13 3 22 22 H 1.09000 * 109.47603 * 305.54748 * 1 2 3 23 23 H 1.08997 * 109.47287 * 65.54936 * 1 2 3 24 24 H 1.09009 * 109.47372 * 185.54816 * 1 2 3 25 25 H 1.09001 * 109.47389 * 239.99804 * 2 1 3 26 26 H 1.09004 * 109.47035 * 119.99863 * 2 1 3 27 27 H 0.97000 * 119.99941 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47106 * 336.36035 * 14 13 3 29 29 H 1.09002 * 109.46813 * 96.36293 * 14 13 3 30 30 H 1.09005 * 115.55130 * 13.64761 * 19 13 3 31 31 H 1.09000 * 117.49537 * 0.02562 * 20 19 13 32 32 H 1.09000 * 117.49775 * 145.02440 * 20 19 13 33 33 H 1.09001 * 117.50260 * 214.97955 * 21 19 13 34 34 H 1.09005 * 117.50219 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1295 1.4426 -0.0309 5 6 1.5030 2.1651 -1.2085 6 1 0.8853 3.0420 -1.0830 7 6 1.8003 1.7067 -2.4744 8 7 2.5529 0.6391 -2.6272 9 14 1.1342 2.6020 -3.9723 10 1 1.6286 4.0024 -3.9725 11 1 1.5950 1.9147 -5.2054 12 1 -0.3503 2.6012 -3.9299 13 7 1.5846 2.1228 1.2198 14 6 2.2166 1.5436 2.4128 15 6 1.2141 1.5369 3.5685 16 9 0.0356 0.9032 3.1599 17 9 1.7610 0.8477 4.6562 18 9 0.9288 2.8533 3.9462 19 6 1.8346 3.5682 1.1409 20 6 2.5029 4.2363 2.3442 21 6 1.0180 4.4776 2.0612 22 1 -0.3634 0.5974 0.8361 23 1 -0.3634 0.4253 -0.9355 24 1 -0.3634 -1.0229 0.0994 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7618 0.3163 -3.5178 28 1 2.5304 0.5221 2.1980 29 1 3.0859 2.1403 2.6893 30 1 2.0851 3.9487 0.1505 31 1 2.7574 3.6032 3.1942 32 1 3.1928 5.0565 2.1455 33 1 0.7316 5.4565 1.6767 34 1 0.2956 4.0034 2.7256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042764913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:31 Heat of formation + Delta-G solvation = -108.766113 kcal Electronic energy + Delta-G solvation = -20353.982641 eV Core-core repulsion = 16873.554866 eV Total energy + Delta-G solvation = -3480.427775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.69325 -47.30349 -47.03691 -38.40460 -34.94250 -32.51876 -30.72304 -28.63896 -25.71320 -23.67005 -22.93073 -21.95300 -19.96269 -19.23564 -18.07025 -17.83572 -17.15451 -16.16975 -15.78451 -14.93246 -14.35747 -14.04521 -13.84112 -13.79305 -13.49621 -13.34009 -13.31323 -13.13579 -12.43586 -12.05927 -11.82085 -11.61736 -11.32147 -10.93979 -10.83051 -10.64567 -10.42037 -10.39283 -10.01490 -9.80795 -9.61928 -9.35373 -8.93734 -8.50435 -7.38010 -6.10258 -4.13929 3.21417 3.27560 3.32762 3.35936 4.09764 4.32951 4.38661 4.50271 4.63300 4.97277 5.22247 5.40818 5.50307 5.58433 5.69695 5.85341 6.07613 6.36811 6.40513 6.55332 6.59913 6.72726 6.76590 7.08871 7.14230 7.31213 7.51075 7.66342 7.74371 7.93758 8.16485 8.36363 8.89577 9.49854 10.96431 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.008322 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.924601 B = 3363.902226 C = 3860.421189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.220 3.780 4 H 0.007 0.993 5 C -0.505 4.505 6 H 0.066 0.934 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.492 5.492 14 C -0.009 4.009 15 C 0.450 3.550 16 F -0.173 7.173 17 F -0.197 7.197 18 F -0.179 7.179 19 C 0.041 3.959 20 C -0.228 4.228 21 C -0.191 4.191 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.015 0.985 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.262 0.738 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 2.318 9.282 9.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.024 0.976 5 C -0.543 4.543 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.214 5.214 14 C -0.139 4.139 15 C 0.395 3.605 16 F -0.154 7.154 17 F -0.179 7.179 18 F -0.161 7.161 19 C -0.068 4.068 20 C -0.267 4.267 21 C -0.229 4.229 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.112 0.888 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.723 2.095 9.150 9.415 hybrid contribution 0.324 0.546 -0.643 0.903 sum -0.400 2.641 8.507 8.917 Atomic orbital electron populations 1.21493 0.96891 0.97592 1.02150 1.21598 0.95771 0.97565 0.99905 1.19403 0.93590 0.91203 0.84226 0.97564 1.21000 1.31697 1.12251 0.89347 0.91555 1.24875 0.95049 0.95024 0.98870 1.69859 1.37111 1.22966 1.22866 0.86591 0.79492 0.79663 0.81884 1.20340 1.21378 1.20139 1.61773 1.55812 1.01343 1.02455 1.23441 0.93913 1.05140 0.91423 1.20981 0.82781 0.73051 0.83719 1.93171 1.50064 1.82034 1.90122 1.93126 1.85851 1.80263 1.58612 1.93046 1.94178 1.36373 1.92478 1.22893 1.01050 0.87353 0.95484 1.23548 0.96555 1.04447 1.02139 1.23507 0.94036 1.00793 1.04587 0.92917 0.92650 0.96595 0.88759 0.96957 0.92783 0.87091 0.89281 0.84983 0.88948 0.89550 0.89851 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.46 37.15 0.35 -2.36 16 2 C -0.11 -2.50 5.35 -26.74 -0.14 -2.64 16 3 C 0.22 5.08 1.71 -68.87 -0.12 4.96 16 4 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 5 C -0.50 -12.69 6.20 -34.44 -0.21 -12.90 16 6 H 0.07 1.68 6.63 -52.49 -0.35 1.34 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -23.85 11.34 55.43 0.63 -23.23 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.49 -9.76 3.43 -220.10 -0.76 -10.52 16 14 C -0.01 -0.15 4.61 -3.82 -0.02 -0.17 16 15 C 0.45 7.38 3.26 37.16 0.12 7.50 16 16 F -0.17 -3.13 15.92 2.25 0.04 -3.09 16 17 F -0.20 -3.03 17.32 2.25 0.04 -3.00 16 18 F -0.18 -2.90 11.33 2.25 0.03 -2.88 16 19 C 0.04 0.77 5.28 -67.71 -0.36 0.42 16 20 C -0.23 -3.57 8.75 -26.69 -0.23 -3.81 16 21 C -0.19 -3.16 9.63 -26.69 -0.26 -3.42 16 22 H 0.05 1.13 6.27 -51.93 -0.33 0.81 16 23 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 24 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 25 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 26 H 0.01 0.25 6.32 -51.93 -0.33 -0.08 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.11 1.88 5.88 -51.93 -0.31 1.57 16 29 H 0.09 1.38 5.42 -51.93 -0.28 1.10 16 30 H 0.13 2.71 6.29 -51.93 -0.33 2.38 16 31 H 0.09 1.39 4.55 -51.93 -0.24 1.16 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.11 1.88 5.40 -51.93 -0.28 1.60 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -25.54 270.84 -5.88 -31.43 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.96 Total: 2.61 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.96 Total: -10.84 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.13 Total: -33.74 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.10 Total: -8.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.54 -5.88 -31.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042764913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.338 kcal (2) G-P(sol) polarization free energy of solvation -25.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds