Wall clock time and date at job start Mon Mar 30 2020 06:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47164 * 2 1 4 4 H 1.09001 * 109.47244 * 181.72212 * 3 2 1 5 5 C 1.50696 * 109.47199 * 301.72592 * 3 2 1 6 6 H 1.08000 * 120.00338 * 119.99765 * 5 3 2 7 7 C 1.37881 * 120.00145 * 300.00000 * 5 3 2 8 8 N 1.31515 * 119.99669 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00183 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47249 * 59.99848 * 9 7 5 11 11 H 1.48500 * 109.47223 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47120 * 300.00108 * 9 7 5 13 13 N 1.46906 * 109.47015 * 61.72589 * 3 2 1 14 14 C 1.46902 * 110.99938 * 66.72798 * 13 3 2 15 15 C 1.53000 * 109.46948 * 216.35832 * 14 13 3 16 16 F 1.39907 * 109.46763 * 53.22985 * 15 14 13 17 17 F 1.39899 * 109.46874 * 173.22792 * 15 14 13 18 18 F 1.39895 * 109.47433 * 293.23162 * 15 14 13 19 19 C 1.46901 * 110.99755 * 190.67939 * 13 3 2 20 20 C 1.53000 * 117.49905 * 227.97249 * 19 13 3 21 21 C 1.52997 * 117.49568 * 159.31232 * 19 13 3 22 22 H 1.09000 * 109.47603 * 305.54748 * 1 2 3 23 23 H 1.08997 * 109.47287 * 65.54936 * 1 2 3 24 24 H 1.09009 * 109.47372 * 185.54816 * 1 2 3 25 25 H 1.09001 * 109.47389 * 239.99804 * 2 1 3 26 26 H 1.09004 * 109.47035 * 119.99863 * 2 1 3 27 27 H 0.97000 * 119.99941 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47106 * 336.36035 * 14 13 3 29 29 H 1.09002 * 109.46813 * 96.36293 * 14 13 3 30 30 H 1.09005 * 115.55130 * 13.64761 * 19 13 3 31 31 H 1.09000 * 117.49537 * 0.02562 * 20 19 13 32 32 H 1.09000 * 117.49775 * 145.02440 * 20 19 13 33 33 H 1.09001 * 117.50260 * 214.97955 * 21 19 13 34 34 H 1.09005 * 117.50219 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1295 1.4426 -0.0309 5 6 1.5030 2.1651 -1.2085 6 1 0.8853 3.0420 -1.0830 7 6 1.8003 1.7067 -2.4744 8 7 2.5529 0.6391 -2.6272 9 14 1.1342 2.6020 -3.9723 10 1 1.6286 4.0024 -3.9725 11 1 1.5950 1.9147 -5.2054 12 1 -0.3503 2.6012 -3.9299 13 7 1.5846 2.1228 1.2198 14 6 2.2166 1.5436 2.4128 15 6 1.2141 1.5369 3.5685 16 9 0.0356 0.9032 3.1599 17 9 1.7610 0.8477 4.6562 18 9 0.9288 2.8533 3.9462 19 6 1.8346 3.5682 1.1409 20 6 2.5029 4.2363 2.3442 21 6 1.0180 4.4776 2.0612 22 1 -0.3634 0.5974 0.8361 23 1 -0.3634 0.4253 -0.9355 24 1 -0.3634 -1.0229 0.0994 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7618 0.3163 -3.5178 28 1 2.5304 0.5221 2.1980 29 1 3.0859 2.1403 2.6893 30 1 2.0851 3.9487 0.1505 31 1 2.7574 3.6032 3.1942 32 1 3.1928 5.0565 2.1455 33 1 0.7316 5.4565 1.6767 34 1 0.2956 4.0034 2.7256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042764913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:29 Heat of formation + Delta-G solvation = -121.884140 kcal Electronic energy + Delta-G solvation = -20354.551481 eV Core-core repulsion = 16873.554866 eV Total energy + Delta-G solvation = -3480.996615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -51.00855 -48.58934 -48.39025 -39.91704 -36.59217 -34.24598 -32.45856 -30.22928 -27.49896 -25.41384 -24.37619 -23.25932 -21.57598 -20.86124 -19.40579 -19.19969 -18.58121 -17.71065 -17.58410 -16.59328 -15.92169 -15.37437 -15.33976 -15.16721 -15.09309 -14.86003 -14.66606 -14.53336 -14.11361 -13.76546 -13.40904 -13.17485 -12.80555 -12.74843 -12.54379 -12.27992 -12.10974 -11.83396 -11.72395 -11.42616 -11.32880 -10.92175 -10.81310 -10.44416 -8.93259 -8.07977 -6.15791 1.44444 1.46448 1.52441 1.86969 2.43093 2.73535 2.99019 3.17436 3.20156 3.30324 3.60335 4.07172 4.14153 4.23833 4.32215 4.48354 4.62231 4.76066 4.83458 4.92114 5.06407 5.17168 5.31960 5.36586 5.42873 5.52251 5.71861 5.76847 5.87048 6.23260 6.33906 6.55881 6.93941 7.50497 8.97679 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.008322 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.924601 B = 3363.902226 C = 3860.421189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C 0.229 3.771 4 H -0.022 1.022 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.497 5.497 14 C -0.011 4.011 15 C 0.458 3.542 16 F -0.183 7.183 17 F -0.188 7.188 18 F -0.176 7.176 19 C 0.011 3.989 20 C -0.205 4.205 21 C -0.182 4.182 22 H 0.055 0.945 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 3.071 10.448 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.145 4.145 3 C 0.123 3.877 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.219 5.219 14 C -0.141 4.141 15 C 0.403 3.597 16 F -0.164 7.164 17 F -0.169 7.169 18 F -0.157 7.157 19 C -0.098 4.098 20 C -0.243 4.243 21 C -0.220 4.220 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.948 2.865 10.334 10.766 hybrid contribution 0.414 0.337 -0.941 1.082 sum -0.534 3.201 9.393 9.938 Atomic orbital electron populations 1.21359 0.96140 0.98576 1.00878 1.21478 0.96293 0.97252 0.99463 1.19116 0.91663 0.91622 0.85288 1.00452 1.21200 1.30977 1.11922 0.90344 0.92225 1.25502 0.95489 0.95700 1.01160 1.69976 1.38298 1.24097 1.23048 0.85761 0.78732 0.78836 0.79187 1.19820 1.21400 1.20166 1.61663 1.56198 1.01986 1.02048 1.23501 0.94589 1.05327 0.90645 1.20729 0.82128 0.73161 0.83658 1.93154 1.50692 1.82278 1.90296 1.93148 1.85653 1.80086 1.58038 1.93054 1.94125 1.36109 1.92424 1.22785 1.04394 0.86966 0.95683 1.23600 0.96370 1.04038 1.00273 1.23535 0.94560 1.00607 1.03255 0.92635 0.95005 0.94754 0.91504 0.95061 0.93049 0.87098 0.87504 0.87405 0.88017 0.87806 0.88483 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.46 71.98 0.68 -4.15 16 2 C -0.11 -4.82 5.35 30.59 0.16 -4.66 16 3 C 0.23 10.62 1.71 44.16 0.08 10.70 16 4 H -0.02 -1.13 8.12 -2.39 -0.02 -1.15 16 5 C -0.51 -25.74 6.20 25.60 0.16 -25.58 16 6 H 0.06 3.06 6.63 -2.91 -0.02 3.04 16 7 C 0.02 1.09 5.30 84.66 0.45 1.53 16 8 N -0.91 -49.90 11.34 21.45 0.24 -49.66 16 9 Si 0.95 42.22 29.54 68.60 2.03 44.24 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.50 -19.32 3.43 -850.26 -2.92 -22.24 16 14 C -0.01 -0.34 4.61 86.30 0.40 0.06 16 15 C 0.46 13.99 3.26 71.98 0.23 14.22 16 16 F -0.18 -6.27 15.92 44.97 0.72 -5.56 16 17 F -0.19 -5.29 17.32 44.97 0.78 -4.51 16 18 F -0.18 -5.21 11.33 44.97 0.51 -4.70 16 19 C 0.01 0.39 5.28 44.91 0.24 0.63 16 20 C -0.20 -5.85 8.75 30.62 0.27 -5.58 16 21 C -0.18 -5.59 9.63 30.62 0.29 -5.30 16 22 H 0.05 2.33 6.27 -2.39 -0.01 2.32 16 23 H 0.03 1.48 7.38 -2.39 -0.02 1.47 16 24 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 3.42 6.12 -2.39 -0.01 3.41 16 26 H 0.03 1.26 6.32 -2.38 -0.02 1.25 16 27 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.11 3.58 5.88 -2.39 -0.01 3.57 16 29 H 0.11 3.06 5.42 -2.39 -0.01 3.05 16 30 H 0.11 4.44 6.29 -2.38 -0.01 4.42 16 31 H 0.10 2.73 4.55 -2.39 -0.01 2.72 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.11 3.40 5.40 -2.38 -0.01 3.39 16 Total: -1.00 -53.66 270.84 5.44 -48.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.13 Total: 12.33 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 2.96 Total: -18.13 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -2.68 Total: -71.90 kcal Atomic # 9 Polarization: -16.78 SS G_CDS: 2.00 Total: -14.77 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -53.66 5.44 -48.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042764913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.663 kcal (2) G-P(sol) polarization free energy of solvation -53.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds