Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36095 * 116.99713 * 2 1 4 4 C 1.38533 * 120.00222 * 359.72325 * 3 2 1 5 5 C 1.38211 * 120.07396 * 179.76644 * 4 3 2 6 6 C 1.38870 * 120.06698 * 0.51316 * 5 4 3 7 7 N 1.39920 * 119.99796 * 179.72224 * 6 5 4 8 8 C 1.46503 * 119.99665 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.50701 * 109.47040 * 89.99771 * 9 7 6 11 11 H 1.07990 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.37888 * 119.99561 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99517 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99988 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46973 * 90.00210 * 14 12 10 16 16 H 1.48501 * 109.46884 * 209.99907 * 14 12 10 17 17 H 1.48497 * 109.47256 * 329.99795 * 14 12 10 18 18 C 1.38823 * 119.99400 * 359.73922 * 6 5 4 19 19 C 1.38517 * 119.93481 * 0.02562 * 18 6 5 20 20 O 1.35990 * 120.03449 * 180.02562 * 19 18 6 21 21 C 1.42893 * 117.00160 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00156 * 1 2 3 24 24 H 1.08998 * 109.47043 * 59.99755 * 1 2 3 25 25 H 1.08000 * 119.95949 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.96476 * 180.23182 * 5 4 3 27 27 H 1.09000 * 109.46907 * 89.99905 * 8 7 6 28 28 H 1.09000 * 109.47162 * 209.99621 * 8 7 6 29 29 H 1.09000 * 109.47454 * 330.00447 * 8 7 6 30 30 H 1.09000 * 109.47359 * 209.99988 * 9 7 6 31 31 H 1.09004 * 109.47016 * 329.99837 * 9 7 6 32 32 H 0.96997 * 119.99951 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.03120 * 180.02562 * 18 6 5 34 34 H 1.08998 * 109.47180 * 180.02562 * 21 20 19 35 35 H 1.08999 * 109.47069 * 299.99970 * 21 20 19 36 36 H 1.08995 * 109.47276 * 59.99815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0058 5 6 1.9181 3.6068 -0.0009 6 6 3.3047 3.6829 -0.0010 7 7 3.9368 4.9312 -0.0019 8 6 5.3996 5.0115 -0.0025 9 6 3.1359 6.1578 -0.0023 10 6 2.8618 6.5792 1.4184 11 1 3.2461 5.9923 2.2394 12 6 2.1212 7.7148 1.6700 13 7 1.8824 8.0827 2.9098 14 14 1.4571 8.7304 0.2498 15 1 0.1085 8.2344 -0.1253 16 1 1.3643 10.1544 0.6605 17 1 2.3705 8.6096 -0.9148 18 6 4.0636 2.5204 -0.0005 19 6 3.4363 1.2855 -0.0004 20 8 4.1777 0.1454 0.0006 21 6 5.5987 0.2957 0.0011 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2138 2.3172 -0.0099 26 1 1.3282 4.5114 -0.0017 27 1 5.7620 5.0308 -1.0304 28 1 5.7139 5.9204 0.5106 29 1 5.8115 4.1430 0.5115 30 1 3.6822 6.9484 -0.5168 31 1 2.1919 5.9752 -0.5157 32 1 1.3611 8.8813 3.0868 33 1 5.1421 2.5790 -0.0001 34 1 6.0681 -0.6881 0.0014 35 1 5.9063 0.8443 -0.8891 36 1 5.9057 0.8455 0.8907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -31.135878 kcal Electronic energy + Delta-G solvation = -18531.826178 eV Core-core repulsion = 15596.621443 eV Total energy + Delta-G solvation = -2935.204735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08699 -38.02078 -37.59177 -34.67110 -32.58921 -30.13420 -29.38848 -28.16223 -27.06139 -26.96235 -24.55535 -22.54055 -21.33401 -20.08560 -18.18003 -16.95817 -16.66175 -16.30139 -15.70181 -15.41818 -14.93616 -14.56245 -14.32195 -14.15250 -14.04061 -13.35325 -12.64179 -12.36623 -12.29103 -12.24250 -11.85470 -11.70959 -11.48242 -11.07385 -11.03359 -10.89430 -10.83251 -10.59805 -10.25138 -10.15286 -9.56035 -8.68383 -8.60706 -7.89198 -6.27441 -6.16345 -4.16757 1.85077 2.20197 3.19710 3.27701 3.28424 3.57887 3.73100 4.01385 4.30148 4.35698 5.13398 5.17109 5.25479 5.31896 5.34582 5.40546 5.54690 5.63842 5.65406 5.73435 5.83818 5.86364 5.94443 5.99899 6.24927 6.41544 6.59120 6.68950 6.92453 6.98007 7.09072 7.43389 7.50969 7.98313 8.00437 8.30157 8.48650 8.91256 9.43121 10.96454 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.006280 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.270696 B = 4457.469382 C = 5229.662933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.017 3.983 4 C -0.121 4.121 5 C -0.183 4.183 6 C 0.244 3.756 7 N -0.610 5.610 8 C 0.100 3.900 9 C 0.221 3.779 10 C -0.536 4.536 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.894 5.894 14 Si 0.872 3.128 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.267 4.267 19 C 0.140 3.860 20 O -0.311 6.311 21 C 0.029 3.971 22 H 0.090 0.910 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -12.097 -7.645 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C -0.029 4.029 4 C -0.140 4.140 5 C -0.206 4.206 6 C 0.138 3.862 7 N -0.317 5.317 8 C -0.044 4.044 9 C 0.100 3.900 10 C -0.574 4.574 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.532 5.532 14 Si 0.699 3.301 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.291 4.291 19 C 0.095 3.905 20 O -0.224 6.224 21 C -0.066 4.066 22 H 0.108 0.892 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.744 -12.115 -7.533 14.528 hybrid contribution -0.421 1.105 -0.449 1.265 sum 2.323 -11.010 -7.983 13.796 Atomic orbital electron populations 1.22889 0.79892 1.02820 1.00846 1.86080 1.19855 1.26440 1.90800 1.17818 0.88764 0.84757 1.11549 1.20758 0.99114 0.91063 1.03093 1.20591 0.92944 0.97717 1.09309 1.17530 0.91447 0.85117 0.92068 1.46681 1.04603 1.03337 1.77112 1.21481 0.81077 1.02217 0.99662 1.19660 0.90900 0.81611 0.97806 1.21491 1.34136 1.10134 0.91650 0.90532 1.24904 0.95594 0.97055 0.95467 1.69899 1.39464 1.25212 1.18674 0.86914 0.80074 0.80068 0.83058 1.19899 1.20949 1.19004 1.20420 0.99575 0.90122 1.19011 1.17822 0.87822 0.85028 0.99875 1.86115 1.18183 1.28887 1.89263 1.22957 0.79469 1.03010 1.01166 0.89165 0.93200 0.93373 0.85465 0.84768 0.94523 0.91139 0.92676 0.95354 0.95454 0.92490 0.85239 0.88870 0.93043 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.34 10.28 -34.65 -0.36 -5.70 16 3 C 0.02 0.31 6.70 -39.14 -0.26 0.05 16 4 C -0.12 -2.14 9.03 -39.48 -0.36 -2.49 16 5 C -0.18 -3.65 9.21 -39.36 -0.36 -4.01 16 6 C 0.24 4.91 6.55 -83.72 -0.55 4.36 16 7 N -0.61 -12.60 3.00 -180.96 -0.54 -13.15 16 8 C 0.10 1.67 10.19 59.85 0.61 2.28 16 9 C 0.22 5.13 3.98 -5.20 -0.02 5.11 16 10 C -0.54 -14.71 9.94 -34.44 -0.34 -15.05 16 11 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 14 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 18 C -0.27 -4.77 8.19 -39.26 -0.32 -5.09 16 19 C 0.14 2.54 6.70 -39.14 -0.26 2.27 16 20 O -0.31 -5.14 10.28 -34.32 -0.35 -5.50 16 21 C 0.03 0.34 9.81 101.05 0.99 1.34 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.57 7.67 -51.93 -0.40 0.18 16 24 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 25 H 0.13 1.90 6.29 -52.49 -0.33 1.57 16 26 H 0.13 2.81 6.13 -52.49 -0.32 2.48 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.05 0.83 6.20 -51.93 -0.32 0.50 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.13 2.00 4.37 -52.48 -0.23 1.77 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 36 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -31.98 296.57 -5.39 -37.37 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.73 Total: 0.66 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 0.02 Total: -7.95 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.23 Total: -39.13 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.71 Total: -11.20 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.98 -5.39 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.233 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds