Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36095 * 116.99713 * 2 1 4 4 C 1.38533 * 120.00222 * 359.72325 * 3 2 1 5 5 C 1.38211 * 120.07396 * 179.76644 * 4 3 2 6 6 C 1.38870 * 120.06698 * 0.51316 * 5 4 3 7 7 N 1.39920 * 119.99796 * 179.72224 * 6 5 4 8 8 C 1.46503 * 119.99665 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.50701 * 109.47040 * 89.99771 * 9 7 6 11 11 H 1.07990 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.37888 * 119.99561 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99517 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99988 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46973 * 90.00210 * 14 12 10 16 16 H 1.48501 * 109.46884 * 209.99907 * 14 12 10 17 17 H 1.48497 * 109.47256 * 329.99795 * 14 12 10 18 18 C 1.38823 * 119.99400 * 359.73922 * 6 5 4 19 19 C 1.38517 * 119.93481 * 0.02562 * 18 6 5 20 20 O 1.35990 * 120.03449 * 180.02562 * 19 18 6 21 21 C 1.42893 * 117.00160 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00156 * 1 2 3 24 24 H 1.08998 * 109.47043 * 59.99755 * 1 2 3 25 25 H 1.08000 * 119.95949 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.96476 * 180.23182 * 5 4 3 27 27 H 1.09000 * 109.46907 * 89.99905 * 8 7 6 28 28 H 1.09000 * 109.47162 * 209.99621 * 8 7 6 29 29 H 1.09000 * 109.47454 * 330.00447 * 8 7 6 30 30 H 1.09000 * 109.47359 * 209.99988 * 9 7 6 31 31 H 1.09004 * 109.47016 * 329.99837 * 9 7 6 32 32 H 0.96997 * 119.99951 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.03120 * 180.02562 * 18 6 5 34 34 H 1.08998 * 109.47180 * 180.02562 * 21 20 19 35 35 H 1.08999 * 109.47069 * 299.99970 * 21 20 19 36 36 H 1.08995 * 109.47276 * 59.99815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0058 5 6 1.9181 3.6068 -0.0009 6 6 3.3047 3.6829 -0.0010 7 7 3.9368 4.9312 -0.0019 8 6 5.3996 5.0115 -0.0025 9 6 3.1359 6.1578 -0.0023 10 6 2.8618 6.5792 1.4184 11 1 3.2461 5.9923 2.2394 12 6 2.1212 7.7148 1.6700 13 7 1.8824 8.0827 2.9098 14 14 1.4571 8.7304 0.2498 15 1 0.1085 8.2344 -0.1253 16 1 1.3643 10.1544 0.6605 17 1 2.3705 8.6096 -0.9148 18 6 4.0636 2.5204 -0.0005 19 6 3.4363 1.2855 -0.0004 20 8 4.1777 0.1454 0.0006 21 6 5.5987 0.2957 0.0011 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2138 2.3172 -0.0099 26 1 1.3282 4.5114 -0.0017 27 1 5.7620 5.0308 -1.0304 28 1 5.7139 5.9204 0.5106 29 1 5.8115 4.1430 0.5115 30 1 3.6822 6.9484 -0.5168 31 1 2.1919 5.9752 -0.5157 32 1 1.3611 8.8813 3.0868 33 1 5.1421 2.5790 -0.0001 34 1 6.0681 -0.6881 0.0014 35 1 5.9063 0.8443 -0.8891 36 1 5.9057 0.8455 0.8907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -52.036325 kcal Electronic energy + Delta-G solvation = -18532.732490 eV Core-core repulsion = 15596.621443 eV Total energy + Delta-G solvation = -2936.111047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41395 -39.24016 -39.01558 -36.17314 -34.61285 -31.64548 -30.78678 -29.73360 -28.33172 -27.96116 -26.08123 -24.24147 -22.69633 -21.58552 -19.49574 -19.06353 -17.99767 -17.64176 -16.89088 -16.86996 -16.39345 -16.01897 -15.65213 -15.56259 -15.33629 -14.87715 -14.49619 -13.70085 -13.60242 -13.55322 -13.40668 -13.12035 -12.93952 -12.49515 -12.45462 -12.24144 -12.10269 -11.96589 -11.86099 -11.76763 -11.60310 -10.80563 -10.06162 -9.28128 -8.31753 -7.75617 -6.37349 0.44804 0.76491 1.36637 1.37186 1.47841 2.32147 2.37162 2.50110 2.63237 2.92653 3.02394 3.90336 4.19715 4.23579 4.36279 4.41433 4.44741 4.49170 4.53706 4.56711 4.60542 4.67595 4.76315 4.79719 4.87233 4.91280 4.95183 5.01556 5.40446 5.47361 5.51408 5.67602 6.11607 6.23169 6.58809 6.65837 6.70420 6.87480 7.28073 8.85593 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.006280 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.270696 B = 4457.469382 C = 5229.662933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.011 3.989 4 C -0.118 4.118 5 C -0.209 4.209 6 C 0.221 3.779 7 N -0.624 5.624 8 C 0.096 3.904 9 C 0.231 3.769 10 C -0.537 4.537 11 H 0.025 0.975 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.946 3.054 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.242 1.242 18 C -0.260 4.260 19 C 0.134 3.866 20 O -0.325 6.325 21 C 0.019 3.981 22 H 0.118 0.882 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.151 0.849 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -13.086 -9.640 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C -0.035 4.035 4 C -0.137 4.137 5 C -0.232 4.232 6 C 0.116 3.884 7 N -0.333 5.333 8 C -0.047 4.047 9 C 0.109 3.891 10 C -0.575 4.575 11 H 0.043 0.957 12 C -0.186 4.186 13 N -0.587 5.587 14 Si 0.769 3.231 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.165 1.165 18 C -0.284 4.284 19 C 0.088 3.912 20 O -0.239 6.239 21 C -0.076 4.076 22 H 0.136 0.864 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.168 0.832 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.019 -13.151 -9.543 16.526 hybrid contribution -0.465 1.203 0.258 1.315 sum 2.555 -11.948 -9.285 15.346 Atomic orbital electron populations 1.23221 0.77514 1.05031 1.01591 1.86064 1.22373 1.25755 1.90609 1.18056 0.89308 0.85331 1.10775 1.20932 1.00345 0.90225 1.02233 1.20609 0.93260 0.97960 1.11322 1.17778 0.91814 0.85584 0.93208 1.46679 1.05823 1.02696 1.78107 1.21659 0.79126 1.02452 1.01462 1.19380 0.91832 0.83144 0.94790 1.21677 1.33616 1.09550 0.92705 0.95685 1.25869 0.95820 0.98443 0.98438 1.70067 1.40948 1.26196 1.21480 0.85738 0.79920 0.77738 0.79744 1.18938 1.20776 1.16493 1.20573 1.00590 0.89291 1.17930 1.18039 0.88353 0.85593 0.99250 1.86105 1.20536 1.28311 1.88940 1.23312 0.77024 1.05269 1.01946 0.86353 0.92831 0.92169 0.83192 0.86532 0.91764 0.92248 0.91076 0.94312 0.94950 0.92347 0.83018 0.85953 0.91797 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.33 -10.68 10.28 -80.66 -0.83 -11.51 16 3 C 0.01 0.40 6.70 22.56 0.15 0.55 16 4 C -0.12 -4.11 9.03 22.33 0.20 -3.91 16 5 C -0.21 -8.40 9.21 22.41 0.21 -8.19 16 6 C 0.22 8.81 6.55 38.14 0.25 9.06 16 7 N -0.62 -25.58 3.00 -726.43 -2.18 -27.76 16 8 C 0.10 3.09 10.19 127.77 1.30 4.39 16 9 C 0.23 10.66 3.98 85.63 0.34 11.00 16 10 C -0.54 -30.36 9.94 25.60 0.25 -30.10 16 11 H 0.02 1.62 8.06 -2.92 -0.02 1.60 16 12 C 0.01 0.70 5.47 84.66 0.46 1.16 16 13 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 14 Si 0.95 42.08 27.47 68.60 1.88 43.97 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 18 C -0.26 -8.97 8.19 22.48 0.18 -8.78 16 19 C 0.13 4.67 6.70 22.55 0.15 4.82 16 20 O -0.33 -10.13 10.28 -79.48 -0.82 -10.95 16 21 C 0.02 0.39 9.81 113.37 1.11 1.50 16 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.13 7.67 -2.39 -0.02 1.12 16 24 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 25 H 0.15 4.32 6.29 -2.91 -0.02 4.30 16 26 H 0.12 5.00 6.13 -2.91 -0.02 4.99 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 29 H 0.07 2.01 6.20 -2.39 -0.01 2.00 16 30 H 0.04 1.71 7.13 -2.39 -0.02 1.69 16 31 H 0.03 1.47 5.62 -2.39 -0.01 1.46 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.15 4.36 4.37 -2.91 -0.01 4.34 16 34 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 36 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 Total: -1.00 -71.03 296.57 5.12 -65.91 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.03 Total: 15.44 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.73 Total: -16.93 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.88 Total: -85.93 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.65 Total: -22.46 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Total: -71.03 5.12 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.878 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds