Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47286 * 2 1 4 4 C 1.35161 * 125.60732 * 89.99978 * 3 2 1 5 5 C 1.40335 * 107.12694 * 180.02562 * 4 3 2 6 6 C 1.36667 * 106.70275 * 0.02562 * 5 4 3 7 7 C 1.46511 * 125.99543 * 179.97438 * 6 5 4 8 8 O 1.21744 * 120.00149 * 1.78926 * 7 6 5 9 9 N 1.34779 * 119.99842 * 181.78924 * 7 6 5 10 10 C 1.36854 * 119.99471 * 181.83696 * 9 7 6 11 11 H 1.07987 * 120.00520 * 328.15785 * 10 9 7 12 12 C 1.39029 * 119.99555 * 148.43686 * 10 9 7 13 13 N 1.31386 * 120.00185 * 38.27171 * 12 10 9 14 14 Si 1.86803 * 119.99896 * 218.27003 * 12 10 9 15 15 H 1.48492 * 109.46983 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47014 * 120.00086 * 14 12 10 17 17 H 1.48497 * 109.46833 * 239.99922 * 14 12 10 18 18 C 1.46500 * 120.00125 * 1.83499 * 9 7 6 19 19 C 1.52994 * 109.47262 * 298.67555 * 18 9 7 20 20 C 1.52997 * 109.46865 * 58.67373 * 18 9 7 21 21 O 1.33963 * 125.61482 * 270.31519 * 3 2 1 22 22 H 1.09003 * 109.46961 * 299.99368 * 1 2 3 23 23 H 1.09000 * 109.47433 * 59.99569 * 1 2 3 24 24 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46961 * 240.00632 * 2 1 3 26 26 H 1.09000 * 109.47433 * 120.00431 * 2 1 3 27 27 H 1.07998 * 126.43940 * 0.03509 * 4 3 2 28 28 H 1.07996 * 126.64866 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99906 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47060 * 178.67043 * 18 9 7 31 31 H 1.08999 * 109.47535 * 20.69244 * 19 18 9 32 32 H 1.08991 * 109.47585 * 140.69939 * 19 18 9 33 33 H 1.09004 * 109.46871 * 260.69626 * 19 18 9 34 34 H 1.09007 * 109.47260 * 100.68090 * 20 18 9 35 35 H 1.08998 * 109.46979 * 220.68426 * 20 18 9 36 36 H 1.09001 * 109.47258 * 340.68434 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2947 2.1627 1.0989 5 6 2.7378 3.4178 0.6541 6 6 2.7228 3.3781 -0.7120 7 6 3.1076 4.4704 -1.6094 8 8 3.5138 5.5218 -1.1493 9 7 3.0118 4.3112 -2.9443 10 6 3.4065 5.3177 -3.7834 11 1 3.3036 6.3480 -3.4768 12 6 3.9348 5.0138 -5.0330 13 7 3.4358 4.0204 -5.7333 14 14 5.3539 6.0181 -5.7164 15 1 5.7302 7.0716 -4.7400 16 1 6.5185 5.1288 -5.9577 17 1 4.9416 6.6515 -6.9946 18 6 2.4851 3.0609 -3.4970 19 6 3.3851 1.8978 -3.0752 20 6 1.0683 2.8268 -2.9691 21 8 2.2868 2.1583 -1.0890 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.1842 1.8487 2.1263 28 1 3.0334 4.2531 1.2715 29 1 3.8047 3.8081 -6.6049 30 1 2.4614 3.1260 -4.5848 31 1 3.9643 2.1861 -2.1980 32 1 2.7699 1.0307 -2.8355 33 1 4.0626 1.6480 -3.8918 34 1 0.3443 3.1162 -3.7309 35 1 0.9401 1.7716 -2.7282 36 1 0.9111 3.4260 -2.0723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091761147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 3.444038 kcal Electronic energy + Delta-G solvation = -19670.932730 eV Core-core repulsion = 16737.227493 eV Total energy + Delta-G solvation = -2933.705237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22364 -38.45080 -35.56278 -34.01111 -32.73524 -32.06038 -30.37858 -28.42156 -26.37005 -25.28899 -23.66789 -21.89053 -20.93669 -20.43367 -18.93955 -17.20955 -16.34194 -15.92459 -15.29505 -14.79401 -14.34558 -14.11033 -13.72941 -13.52932 -13.27701 -12.85648 -12.49421 -12.30732 -11.99417 -11.82502 -11.67006 -11.49505 -11.36151 -11.24988 -11.18971 -10.91548 -10.51686 -10.34826 -10.19954 -9.61632 -9.28577 -8.79221 -8.69824 -7.88667 -7.73063 -6.52896 -3.92019 1.85194 2.90189 3.12513 3.24620 3.35449 3.41997 4.05433 4.23550 4.72992 4.91647 4.94653 5.12274 5.26984 5.44738 5.57694 5.65216 5.78547 5.89800 5.94294 6.15096 6.17903 6.26990 6.36582 6.41890 6.45303 6.50728 6.69691 6.78543 6.91072 6.99040 7.17356 7.25569 7.57445 7.76000 8.19243 8.56030 9.03138 9.30579 9.91089 10.35640 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.033567 B = 0.007523 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.960901 B = 3720.999542 C = 4224.108272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.030 4.030 4 C -0.217 4.217 5 C -0.168 4.168 6 C -0.026 4.026 7 C 0.510 3.490 8 O -0.574 6.574 9 N -0.414 5.414 10 C -0.324 4.324 11 H 0.104 0.896 12 C 0.059 3.941 13 N -0.835 5.835 14 Si 0.906 3.094 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.281 1.281 18 C 0.075 3.925 19 C -0.139 4.139 20 C -0.147 4.147 21 O -0.133 6.133 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.275 0.725 30 H 0.177 0.823 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -9.567 5.810 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.082 4.082 4 C -0.237 4.237 5 C -0.189 4.189 6 C -0.079 4.079 7 C 0.299 3.701 8 O -0.460 6.460 9 N -0.130 5.130 10 C -0.450 4.450 11 H 0.121 0.879 12 C -0.147 4.147 13 N -0.471 5.471 14 Si 0.730 3.270 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.207 1.207 18 C -0.029 4.029 19 C -0.197 4.197 20 C -0.205 4.205 21 O -0.028 6.028 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.087 0.913 30 H 0.192 0.808 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.872 -9.236 5.458 11.405 hybrid contribution 0.612 0.272 0.003 0.670 sum -3.260 -8.964 5.461 10.990 Atomic orbital electron populations 1.21787 0.94278 1.01828 1.02779 1.20017 0.96122 0.88076 1.03584 1.22666 1.04462 0.95391 0.85700 1.21349 1.08789 0.94694 0.98818 1.21706 1.05135 0.98688 0.93399 1.22710 1.05093 0.85367 0.94728 1.16408 0.85779 0.85760 0.82169 1.90688 1.52952 1.26824 1.75583 1.43798 1.51552 1.14398 1.03281 1.19444 1.39186 0.89126 0.97258 0.87861 1.25405 0.97083 0.96467 0.95789 1.69265 1.35848 1.30865 1.11104 0.86248 0.82036 0.80383 0.78321 1.18596 1.20211 1.20731 1.22762 0.90192 0.82951 1.06979 1.22316 0.99572 0.98144 0.99684 1.22483 0.97949 1.00386 0.99710 1.85007 1.63708 1.22178 1.31937 0.92337 0.92080 0.92036 0.90294 0.89497 0.84159 0.83446 0.91329 0.80752 0.93434 0.93126 0.93724 0.93760 0.92915 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 37.16 0.37 -1.17 16 2 C -0.04 -0.47 6.47 -27.88 -0.18 -0.65 16 3 C -0.03 -0.48 6.57 -35.40 -0.23 -0.71 16 4 C -0.22 -3.51 10.77 -39.89 -0.43 -3.94 16 5 C -0.17 -3.30 10.63 -39.36 -0.42 -3.72 16 6 C -0.03 -0.58 4.70 -36.82 -0.17 -0.75 16 7 C 0.51 13.45 6.61 -12.93 -0.09 13.37 16 8 O -0.57 -16.75 16.65 5.15 0.09 -16.66 16 9 N -0.41 -10.93 2.55 -109.26 -0.28 -11.21 16 10 C -0.32 -9.00 8.96 -15.02 -0.13 -9.13 16 11 H 0.10 3.01 7.76 -52.49 -0.41 2.60 16 12 C 0.06 1.53 5.31 -17.45 -0.09 1.43 16 13 N -0.83 -20.91 10.30 55.50 0.57 -20.34 16 14 Si 0.91 20.15 29.68 -169.99 -5.05 15.10 16 15 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.07 1.73 2.81 -67.93 -0.19 1.54 16 19 C -0.14 -2.92 8.11 37.15 0.30 -2.62 16 20 C -0.15 -3.02 8.17 37.16 0.30 -2.72 16 21 O -0.13 -2.56 2.51 4.90 0.01 -2.55 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.18 4.37 4.37 -58.41 -0.26 4.11 16 31 H 0.05 1.06 5.49 -51.93 -0.29 0.77 16 32 H 0.05 0.92 6.41 -51.93 -0.33 0.59 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 36 H 0.05 1.00 5.56 -51.93 -0.29 0.71 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -29.73 289.42 -6.10 -35.83 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.84 Total: 4.55 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.96 Total: -9.07 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.29 Total: -31.55 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.10 Total: -19.21 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.05 Total: 15.10 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.73 -6.10 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091761147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.273 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds