Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47286 * 2 1 4 4 C 1.35161 * 125.60732 * 89.99978 * 3 2 1 5 5 C 1.40335 * 107.12694 * 180.02562 * 4 3 2 6 6 C 1.36667 * 106.70275 * 0.02562 * 5 4 3 7 7 C 1.46511 * 125.99543 * 179.97438 * 6 5 4 8 8 O 1.21744 * 120.00149 * 1.78926 * 7 6 5 9 9 N 1.34779 * 119.99842 * 181.78924 * 7 6 5 10 10 C 1.36854 * 119.99471 * 181.83696 * 9 7 6 11 11 H 1.07987 * 120.00520 * 328.15785 * 10 9 7 12 12 C 1.39029 * 119.99555 * 148.43686 * 10 9 7 13 13 N 1.31386 * 120.00185 * 38.27171 * 12 10 9 14 14 Si 1.86803 * 119.99896 * 218.27003 * 12 10 9 15 15 H 1.48492 * 109.46983 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47014 * 120.00086 * 14 12 10 17 17 H 1.48497 * 109.46833 * 239.99922 * 14 12 10 18 18 C 1.46500 * 120.00125 * 1.83499 * 9 7 6 19 19 C 1.52994 * 109.47262 * 298.67555 * 18 9 7 20 20 C 1.52997 * 109.46865 * 58.67373 * 18 9 7 21 21 O 1.33963 * 125.61482 * 270.31519 * 3 2 1 22 22 H 1.09003 * 109.46961 * 299.99368 * 1 2 3 23 23 H 1.09000 * 109.47433 * 59.99569 * 1 2 3 24 24 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46961 * 240.00632 * 2 1 3 26 26 H 1.09000 * 109.47433 * 120.00431 * 2 1 3 27 27 H 1.07998 * 126.43940 * 0.03509 * 4 3 2 28 28 H 1.07996 * 126.64866 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99906 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47060 * 178.67043 * 18 9 7 31 31 H 1.08999 * 109.47535 * 20.69244 * 19 18 9 32 32 H 1.08991 * 109.47585 * 140.69939 * 19 18 9 33 33 H 1.09004 * 109.46871 * 260.69626 * 19 18 9 34 34 H 1.09007 * 109.47260 * 100.68090 * 20 18 9 35 35 H 1.08998 * 109.46979 * 220.68426 * 20 18 9 36 36 H 1.09001 * 109.47258 * 340.68434 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2947 2.1627 1.0989 5 6 2.7378 3.4178 0.6541 6 6 2.7228 3.3781 -0.7120 7 6 3.1076 4.4704 -1.6094 8 8 3.5138 5.5218 -1.1493 9 7 3.0118 4.3112 -2.9443 10 6 3.4065 5.3177 -3.7834 11 1 3.3036 6.3480 -3.4768 12 6 3.9348 5.0138 -5.0330 13 7 3.4358 4.0204 -5.7333 14 14 5.3539 6.0181 -5.7164 15 1 5.7302 7.0716 -4.7400 16 1 6.5185 5.1288 -5.9577 17 1 4.9416 6.6515 -6.9946 18 6 2.4851 3.0609 -3.4970 19 6 3.3851 1.8978 -3.0752 20 6 1.0683 2.8268 -2.9691 21 8 2.2868 2.1583 -1.0890 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.1842 1.8487 2.1263 28 1 3.0334 4.2531 1.2715 29 1 3.8047 3.8081 -6.6049 30 1 2.4614 3.1260 -4.5848 31 1 3.9643 2.1861 -2.1980 32 1 2.7699 1.0307 -2.8355 33 1 4.0626 1.6480 -3.8918 34 1 0.3443 3.1162 -3.7309 35 1 0.9401 1.7716 -2.7282 36 1 0.9111 3.4260 -2.0723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091761147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = -13.852178 kcal Electronic energy + Delta-G solvation = -19671.682750 eV Core-core repulsion = 16737.227493 eV Total energy + Delta-G solvation = -2934.455258 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.69679 -40.34929 -37.51031 -35.16575 -34.46990 -33.59611 -32.26600 -29.84656 -28.04853 -27.09437 -24.98902 -23.45928 -22.54783 -21.81362 -20.65507 -19.06475 -18.08535 -17.45780 -17.16070 -16.28308 -16.03969 -15.66270 -15.21597 -15.13156 -14.98042 -14.10243 -13.98840 -13.74885 -13.64898 -13.40412 -13.24815 -13.11984 -13.02801 -12.79440 -12.40996 -12.26260 -12.17023 -11.94914 -11.81384 -11.41983 -10.77027 -10.74153 -10.73239 -9.78302 -9.26838 -8.48559 -5.98826 0.28923 1.29990 1.40346 1.51722 1.58390 1.95145 2.22631 2.34733 2.85387 3.02182 3.72631 4.02991 4.10504 4.25586 4.34970 4.42989 4.46800 4.62136 4.69824 4.74618 4.79925 4.91180 4.97281 5.04571 5.07297 5.10012 5.19233 5.28465 5.32451 5.41951 5.48606 5.65596 5.72136 6.07304 6.25171 6.60868 7.02082 7.34139 7.93644 8.38762 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.033567 B = 0.007523 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.960901 B = 3720.999542 C = 4224.108272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.011 4.011 4 C -0.219 4.219 5 C -0.160 4.160 6 C -0.069 4.069 7 C 0.496 3.504 8 O -0.625 6.625 9 N -0.424 5.424 10 C -0.375 4.375 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.837 5.837 14 Si 0.967 3.033 15 H -0.281 1.281 16 H -0.265 1.265 17 H -0.261 1.261 18 C 0.068 3.932 19 C -0.126 4.126 20 C -0.135 4.135 21 O -0.139 6.139 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.180 0.820 28 H 0.144 0.856 29 H 0.286 0.714 30 H 0.161 0.839 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -12.665 6.202 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.063 4.063 4 C -0.237 4.237 5 C -0.182 4.182 6 C -0.122 4.122 7 C 0.287 3.713 8 O -0.516 6.516 9 N -0.139 5.139 10 C -0.502 4.502 11 H 0.088 0.912 12 C -0.169 4.169 13 N -0.472 5.472 14 Si 0.789 3.211 15 H -0.206 1.206 16 H -0.189 1.189 17 H -0.186 1.186 18 C -0.035 4.035 19 C -0.183 4.183 20 C -0.192 4.192 21 O -0.034 6.034 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.137 0.863 27 H 0.197 0.803 28 H 0.162 0.838 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.351 -12.373 5.808 14.344 hybrid contribution 0.678 1.117 -0.067 1.308 sum -3.673 -11.256 5.740 13.158 Atomic orbital electron populations 1.21790 0.93118 1.03507 1.02091 1.20353 0.96899 0.84844 1.05723 1.23753 1.01162 0.96700 0.84700 1.21701 1.08365 0.92819 1.00864 1.21992 1.03443 1.00154 0.92586 1.21893 1.09614 0.86111 0.94539 1.16958 0.85233 0.86469 0.82631 1.90611 1.55252 1.29165 1.76576 1.43964 1.51572 1.14962 1.03403 1.19287 1.43496 0.88573 0.98802 0.91173 1.26009 0.97749 0.97867 0.95303 1.69302 1.35559 1.30932 1.11411 0.85352 0.79096 0.78812 0.77790 1.20618 1.18947 1.18611 1.22812 0.92063 0.82482 1.06099 1.22189 0.99282 0.98202 0.98636 1.22350 0.96206 1.01861 0.98805 1.84921 1.63829 1.21307 1.33362 0.92190 0.93700 0.89216 0.89309 0.86260 0.80290 0.83782 0.90143 0.82311 0.95026 0.90006 0.94296 0.93681 0.89964 0.95212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.89 71.98 0.71 -1.65 16 2 C -0.04 -0.74 6.47 29.85 0.19 -0.55 16 3 C -0.01 -0.30 6.57 24.98 0.16 -0.14 16 4 C -0.22 -6.41 10.77 22.07 0.24 -6.17 16 5 C -0.16 -6.26 10.63 22.41 0.24 -6.02 16 6 C -0.07 -3.13 4.70 24.06 0.11 -3.02 16 7 C 0.50 27.63 6.61 86.40 0.57 28.20 16 8 O -0.63 -39.18 16.65 -4.49 -0.07 -39.25 16 9 N -0.42 -23.43 2.55 -617.80 -1.58 -25.01 16 10 C -0.38 -22.05 8.96 84.10 0.75 -21.30 16 11 H 0.07 4.45 7.76 -2.92 -0.02 4.43 16 12 C 0.04 2.01 5.31 84.95 0.45 2.46 16 13 N -0.84 -41.98 10.30 21.68 0.22 -41.76 16 14 Si 0.97 42.03 29.68 68.60 2.04 44.07 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 C 0.07 3.19 2.81 44.99 0.13 3.32 16 19 C -0.13 -5.16 8.11 71.98 0.58 -4.58 16 20 C -0.13 -5.45 8.17 71.98 0.59 -4.86 16 21 O -0.14 -5.14 2.51 -5.40 -0.01 -5.15 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.14 5.59 8.06 -2.91 -0.02 5.56 16 29 H 0.29 12.98 8.31 -92.71 -0.77 12.21 16 30 H 0.16 8.03 4.37 -15.18 -0.07 7.97 16 31 H 0.03 1.40 5.49 -2.39 -0.01 1.38 16 32 H 0.08 2.76 6.41 -2.39 -0.02 2.75 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.08 2.76 6.39 -2.39 -0.02 2.75 16 36 H 0.03 1.29 5.56 -2.39 -0.01 1.28 16 Total: -1.00 -69.07 289.42 6.35 -62.73 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 1.02 Total: 18.69 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 4.73 Total: -14.31 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -1.35 Total: -66.77 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.09 Total: -44.40 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.04 Total: 44.07 kcal Total: -69.07 6.35 -62.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091761147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.875 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds