Wall clock time and date at job start Mon Mar 30 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50693 * 109.46938 * 2 1 4 4 C 1.35131 * 125.61847 * 89.99944 * 3 2 1 5 5 C 1.40364 * 107.11524 * 180.02562 * 4 3 2 6 6 C 1.36539 * 106.70925 * 0.02562 * 5 4 3 7 7 C 1.46656 * 125.98808 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99799 * 6.17840 * 7 6 5 9 9 N 1.34774 * 120.00301 * 186.17574 * 7 6 5 10 10 C 1.46499 * 120.00034 * 5.35762 * 9 7 6 11 11 C 1.46500 * 120.00505 * 185.36005 * 9 7 6 12 12 H 1.09007 * 109.47001 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.47173 * 119.99786 * 11 9 7 14 14 C 1.50696 * 109.47278 * 240.00380 * 11 9 7 15 15 H 1.07998 * 120.00128 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99924 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00179 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99732 * 179.97438 * 16 14 11 19 19 H 1.48492 * 109.47221 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47253 * 119.99630 * 18 16 14 21 21 H 1.48506 * 109.47207 * 239.99494 * 18 16 14 22 22 O 1.33932 * 125.61741 * 270.29232 * 3 2 1 23 23 H 1.08999 * 109.47047 * 299.99915 * 1 2 3 24 24 H 1.09002 * 109.47050 * 60.00374 * 1 2 3 25 25 H 1.09007 * 109.46727 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47047 * 240.00085 * 2 1 3 27 27 H 1.08998 * 109.46940 * 120.00132 * 2 1 3 28 28 H 1.08003 * 126.43984 * 0.02562 * 4 3 2 29 29 H 1.08000 * 126.64097 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47522 * 275.31694 * 10 9 7 31 31 H 1.09009 * 109.46927 * 35.31515 * 10 9 7 32 32 H 1.08996 * 109.47222 * 155.31593 * 10 9 7 33 33 H 1.08995 * 109.47344 * 60.00335 * 13 11 9 34 34 H 1.08998 * 109.46957 * 299.99853 * 13 11 9 35 35 H 1.09008 * 109.47005 * 180.02562 * 13 11 9 36 36 H 0.97003 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0985 5 6 2.7377 3.4179 0.6530 6 6 2.7226 3.3779 -0.7117 7 6 3.1077 4.4712 -1.6102 8 8 3.5885 5.4923 -1.1549 9 7 2.9291 4.3452 -2.9401 10 6 2.2440 3.1676 -3.4788 11 6 3.4201 5.3856 -3.8470 12 1 3.8984 6.1759 -3.2684 13 6 4.4356 4.7787 -4.8173 14 6 2.2643 5.9608 -4.6243 15 1 1.2640 5.5884 -4.4595 16 6 2.4839 6.9619 -5.5466 17 7 3.7020 7.4152 -5.7476 18 14 1.0512 7.6744 -6.5105 19 1 -0.2057 6.9973 -6.1022 20 1 0.9428 9.1293 -6.2334 21 1 1.2777 7.4627 -7.9629 22 8 2.2871 2.1580 -1.0887 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.1841 1.8489 2.1260 29 1 3.0326 4.2537 1.2703 30 1 2.9594 2.3540 -3.5983 31 1 1.4554 2.8601 -2.7919 32 1 1.8073 3.4126 -4.4470 33 1 3.9578 3.9883 -5.3960 34 1 5.2716 4.3628 -4.2550 35 1 4.8012 5.5530 -5.4918 36 1 3.8564 8.1197 -6.3962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112733774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:59 Heat of formation + Delta-G solvation = -26.108418 kcal Electronic energy + Delta-G solvation = -18629.636521 eV Core-core repulsion = 15694.649793 eV Total energy + Delta-G solvation = -2934.986728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.51447 -38.79922 -35.46657 -34.32591 -32.88956 -32.59376 -29.86715 -28.31458 -26.14915 -25.24100 -24.32145 -22.31063 -21.20122 -20.32323 -19.07241 -16.97987 -16.42340 -16.27804 -15.64345 -15.27607 -14.61114 -14.30008 -14.16932 -13.39643 -13.15981 -12.89321 -12.72641 -12.53460 -12.48225 -12.36517 -11.74299 -11.61012 -11.37784 -11.19858 -11.04552 -10.84524 -10.71951 -10.27100 -10.18861 -9.82035 -9.37622 -9.16437 -8.44954 -8.33717 -7.62529 -6.08395 -4.16347 1.39591 2.52010 2.88045 3.26253 3.34171 3.37521 3.78292 3.92326 4.39348 4.58415 4.84454 5.00759 5.07214 5.19502 5.23534 5.29074 5.57452 5.64487 5.79979 5.89165 5.95524 6.00571 6.09996 6.10598 6.44198 6.55485 6.74256 6.81942 7.01801 7.10329 7.39427 7.50220 7.69205 7.98875 8.16072 8.43671 8.76467 8.93928 9.49823 10.97132 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031130 B = 0.005482 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.227380 B = 5106.420236 C = 5439.342347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 C -0.003 4.003 4 C -0.219 4.219 5 C -0.138 4.138 6 C -0.054 4.054 7 C 0.583 3.417 8 O -0.532 6.532 9 N -0.579 5.579 10 C 0.085 3.915 11 C 0.256 3.744 12 H 0.065 0.935 13 C -0.146 4.146 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.153 6.153 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.012 0.988 35 H 0.095 0.905 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -14.683 9.149 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.055 4.055 4 C -0.238 4.238 5 C -0.159 4.159 6 C -0.107 4.107 7 C 0.369 3.631 8 O -0.412 6.412 9 N -0.309 5.309 10 C -0.058 4.058 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.205 4.205 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.049 6.049 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.114 0.886 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.105 -14.081 8.893 17.152 hybrid contribution -0.742 0.404 -0.358 0.917 sum -4.847 -13.676 8.535 16.834 Atomic orbital electron populations 1.21798 0.93847 1.02250 1.02914 1.20111 0.96428 0.87438 1.04130 1.22777 1.02736 0.95168 0.84801 1.21479 1.08494 0.94457 0.99351 1.21869 1.02075 0.98787 0.93175 1.22617 1.07841 0.85309 0.94920 1.16742 0.79939 0.84374 0.82039 1.90828 1.46780 1.27891 1.75680 1.48227 1.54548 1.22811 1.05280 1.21699 0.96299 0.87165 1.00644 1.19063 0.93581 0.84800 0.86893 0.91689 1.22095 0.97157 1.00910 1.00314 1.21336 0.93624 1.19927 1.21557 0.92086 1.24891 0.95956 0.96149 0.96745 1.69887 1.19642 1.28100 1.34902 0.86413 0.82295 0.79028 0.79502 1.19805 1.20855 1.20902 1.84268 1.64171 1.22351 1.34069 0.92152 0.92024 0.91664 0.89901 0.88920 0.83284 0.82605 0.93686 0.92193 0.89686 0.94999 0.96913 0.88610 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.81 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C 0.00 -0.03 6.57 -35.42 -0.23 -0.27 16 4 C -0.22 -2.84 10.77 -39.89 -0.43 -3.27 16 5 C -0.14 -2.24 10.63 -39.40 -0.42 -2.66 16 6 C -0.05 -1.02 6.70 -36.80 -0.25 -1.26 16 7 C 0.58 13.26 7.63 -12.86 -0.10 13.16 16 8 O -0.53 -13.77 16.21 5.19 0.08 -13.69 16 9 N -0.58 -13.22 2.75 -176.81 -0.49 -13.71 16 10 C 0.09 1.59 8.26 59.85 0.49 2.09 16 11 C 0.26 6.71 2.63 -69.08 -0.18 6.53 16 12 H 0.07 1.95 6.91 -51.93 -0.36 1.59 16 13 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 14 C -0.53 -14.41 7.96 -34.44 -0.27 -14.68 16 15 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 O -0.15 -2.46 7.53 5.00 0.04 -2.43 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.15 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.03 5.97 -51.92 -0.31 0.72 16 32 H 0.08 1.62 7.10 -51.93 -0.37 1.25 16 33 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 2.53 6.07 -51.92 -0.32 2.21 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -31.20 303.02 -6.23 -37.43 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.08 Total: -0.51 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.96 Total: -3.26 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.14 Total: -38.24 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.12 Total: -16.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.20 -6.23 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112733774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.322 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds