Wall clock time and date at job start Mon Mar 30 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50693 * 109.46938 * 2 1 4 4 C 1.35131 * 125.61847 * 89.99944 * 3 2 1 5 5 C 1.40364 * 107.11524 * 180.02562 * 4 3 2 6 6 C 1.36539 * 106.70925 * 0.02562 * 5 4 3 7 7 C 1.46656 * 125.98808 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99799 * 6.17840 * 7 6 5 9 9 N 1.34774 * 120.00301 * 186.17574 * 7 6 5 10 10 C 1.46499 * 120.00034 * 5.35762 * 9 7 6 11 11 C 1.46500 * 120.00505 * 185.36005 * 9 7 6 12 12 H 1.09007 * 109.47001 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.47173 * 119.99786 * 11 9 7 14 14 C 1.50696 * 109.47278 * 240.00380 * 11 9 7 15 15 H 1.07998 * 120.00128 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99924 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00179 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99732 * 179.97438 * 16 14 11 19 19 H 1.48492 * 109.47221 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47253 * 119.99630 * 18 16 14 21 21 H 1.48506 * 109.47207 * 239.99494 * 18 16 14 22 22 O 1.33932 * 125.61741 * 270.29232 * 3 2 1 23 23 H 1.08999 * 109.47047 * 299.99915 * 1 2 3 24 24 H 1.09002 * 109.47050 * 60.00374 * 1 2 3 25 25 H 1.09007 * 109.46727 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47047 * 240.00085 * 2 1 3 27 27 H 1.08998 * 109.46940 * 120.00132 * 2 1 3 28 28 H 1.08003 * 126.43984 * 0.02562 * 4 3 2 29 29 H 1.08000 * 126.64097 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47522 * 275.31694 * 10 9 7 31 31 H 1.09009 * 109.46927 * 35.31515 * 10 9 7 32 32 H 1.08996 * 109.47222 * 155.31593 * 10 9 7 33 33 H 1.08995 * 109.47344 * 60.00335 * 13 11 9 34 34 H 1.08998 * 109.46957 * 299.99853 * 13 11 9 35 35 H 1.09008 * 109.47005 * 180.02562 * 13 11 9 36 36 H 0.97003 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0985 5 6 2.7377 3.4179 0.6530 6 6 2.7226 3.3779 -0.7117 7 6 3.1077 4.4712 -1.6102 8 8 3.5885 5.4923 -1.1549 9 7 2.9291 4.3452 -2.9401 10 6 2.2440 3.1676 -3.4788 11 6 3.4201 5.3856 -3.8470 12 1 3.8984 6.1759 -3.2684 13 6 4.4356 4.7787 -4.8173 14 6 2.2643 5.9608 -4.6243 15 1 1.2640 5.5884 -4.4595 16 6 2.4839 6.9619 -5.5466 17 7 3.7020 7.4152 -5.7476 18 14 1.0512 7.6744 -6.5105 19 1 -0.2057 6.9973 -6.1022 20 1 0.9428 9.1293 -6.2334 21 1 1.2777 7.4627 -7.9629 22 8 2.2871 2.1580 -1.0887 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.1841 1.8489 2.1260 29 1 3.0326 4.2537 1.2703 30 1 2.9594 2.3540 -3.5983 31 1 1.4554 2.8601 -2.7919 32 1 1.8073 3.4126 -4.4470 33 1 3.9578 3.9883 -5.3960 34 1 5.2716 4.3628 -4.2550 35 1 4.8012 5.5530 -5.4918 36 1 3.8564 8.1197 -6.3962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112733774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:59 Heat of formation + Delta-G solvation = -45.100353 kcal Electronic energy + Delta-G solvation = -18630.460073 eV Core-core repulsion = 15694.649793 eV Total energy + Delta-G solvation = -2935.810280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.71935 -40.56386 -37.33671 -35.26128 -34.71848 -33.82486 -31.71498 -29.58541 -27.75771 -27.34370 -25.43282 -23.62398 -22.51689 -21.63361 -20.68272 -18.68930 -18.29108 -17.64778 -17.34528 -16.67222 -16.14643 -15.85384 -15.18487 -14.98127 -14.47598 -14.20819 -14.07578 -14.02606 -13.96020 -13.57189 -13.21907 -13.05364 -12.84028 -12.76345 -12.68236 -12.40851 -12.25343 -12.14012 -11.86873 -11.25671 -11.14198 -10.99972 -10.56273 -9.67569 -9.31744 -8.17708 -6.34589 0.06599 1.38385 1.40631 1.42041 1.53571 1.64060 2.14761 2.29974 2.45244 3.10456 3.51192 3.85025 3.97077 4.26768 4.37339 4.39118 4.54783 4.62537 4.62865 4.69306 4.84027 4.86407 4.90138 4.98448 5.04639 5.07132 5.10338 5.38087 5.40521 5.47373 5.52506 5.60593 5.89813 6.03216 6.10187 6.61844 6.71061 7.10349 7.37219 8.87426 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031130 B = 0.005482 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.227380 B = 5106.420236 C = 5439.342347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C 0.017 3.983 4 C -0.220 4.220 5 C -0.127 4.127 6 C -0.098 4.098 7 C 0.576 3.424 8 O -0.583 6.583 9 N -0.589 5.589 10 C 0.090 3.910 11 C 0.260 3.740 12 H 0.014 0.986 13 C -0.131 4.131 14 C -0.541 4.541 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.271 1.271 22 O -0.161 6.161 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.187 0.813 29 H 0.156 0.844 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -17.421 9.860 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.036 4.036 4 C -0.238 4.238 5 C -0.148 4.148 6 C -0.150 4.150 7 C 0.365 3.635 8 O -0.466 6.466 9 N -0.317 5.317 10 C -0.052 4.052 11 C 0.158 3.842 12 H 0.032 0.968 13 C -0.190 4.190 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.197 1.197 22 O -0.057 6.057 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.205 0.795 29 H 0.174 0.826 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.778 -16.859 9.597 20.242 hybrid contribution -0.241 1.134 -0.456 1.246 sum -6.019 -15.725 9.142 19.160 Atomic orbital electron populations 1.21804 0.93037 1.03674 1.02184 1.20432 0.96895 0.84515 1.06208 1.23815 0.99582 0.96330 0.83854 1.21858 1.08000 0.92693 1.01281 1.22162 1.00151 1.00166 0.92323 1.21771 1.12582 0.85979 0.94665 1.17225 0.79017 0.85012 0.82250 1.90773 1.49024 1.30286 1.76562 1.48215 1.54964 1.23223 1.05324 1.21816 0.96911 0.86035 1.00475 1.18713 0.93661 0.84987 0.86815 0.96781 1.21881 0.97012 1.00458 0.99630 1.21543 0.93774 1.20660 1.22006 0.92256 1.25738 0.98571 0.96321 0.97635 1.70018 1.21559 1.28442 1.35391 0.85353 0.79097 0.77852 0.78371 1.19122 1.20943 1.19668 1.84214 1.64434 1.21577 1.35483 0.92038 0.93658 0.89217 0.88941 0.85748 0.79525 0.82633 0.91711 0.90592 0.90227 0.93330 0.96081 0.90821 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.90 71.99 0.71 -1.03 16 2 C -0.04 -0.55 6.47 29.85 0.19 -0.36 16 3 C 0.02 0.37 6.57 24.97 0.16 0.54 16 4 C -0.22 -4.99 10.77 22.07 0.24 -4.76 16 5 C -0.13 -4.00 10.63 22.39 0.24 -3.77 16 6 C -0.10 -3.67 6.70 24.07 0.16 -3.51 16 7 C 0.58 27.32 7.63 86.44 0.66 27.98 16 8 O -0.58 -32.16 16.21 -4.34 -0.07 -32.23 16 9 N -0.59 -27.70 2.75 -831.53 -2.29 -29.99 16 10 C 0.09 3.31 8.26 127.77 1.06 4.36 16 11 C 0.26 14.18 2.63 44.24 0.12 14.30 16 12 H 0.01 0.91 6.91 -2.38 -0.02 0.90 16 13 C -0.13 -6.56 8.97 71.98 0.65 -5.91 16 14 C -0.54 -30.41 7.96 25.60 0.20 -30.21 16 15 H 0.06 3.27 7.42 -2.91 -0.02 3.25 16 16 C 0.02 0.96 5.30 84.65 0.45 1.41 16 17 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 18 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 O -0.16 -4.92 7.53 -5.02 -0.04 -4.96 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.54 5.97 -2.38 -0.01 2.52 16 32 H 0.08 3.00 7.10 -2.39 -0.02 2.98 16 33 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 4.01 6.07 -2.38 -0.01 4.00 16 36 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -71.15 303.02 5.77 -65.37 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.07 Total: 10.10 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 4.84 Total: -0.96 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.05 Total: -83.00 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.11 Total: -37.19 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.15 5.77 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112733774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.274 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds