Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47175 * 2 1 4 4 C 1.35135 * 125.61601 * 89.99915 * 3 2 1 5 5 C 1.40364 * 107.11557 * 180.02562 * 4 3 2 6 6 C 1.36542 * 106.70880 * 359.97438 * 5 4 3 7 7 C 1.46656 * 125.98963 * 179.97438 * 6 5 4 8 8 O 1.21697 * 120.00029 * 353.41314 * 7 6 5 9 9 N 1.34781 * 120.00068 * 173.68784 * 7 6 5 10 10 C 1.46494 * 119.99884 * 3.05569 * 9 7 6 11 11 C 1.46504 * 119.99797 * 183.05724 * 9 7 6 12 12 H 1.09002 * 109.47279 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.46943 * 239.99771 * 11 9 7 14 14 C 1.50699 * 109.46716 * 120.00044 * 11 9 7 15 15 H 1.07995 * 120.00632 * 359.97438 * 14 11 9 16 16 C 1.37881 * 119.99687 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00063 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47249 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47157 * 119.99812 * 18 16 14 21 21 H 1.48500 * 109.47178 * 239.99756 * 18 16 14 22 22 O 1.33933 * 125.61959 * 270.31426 * 3 2 1 23 23 H 1.09001 * 109.47601 * 59.99930 * 1 2 3 24 24 H 1.08999 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47366 * 299.99770 * 1 2 3 26 26 H 1.08999 * 109.46904 * 240.00262 * 2 1 3 27 27 H 1.08998 * 109.47107 * 119.99979 * 2 1 3 28 28 H 1.07996 * 126.44196 * 0.05648 * 4 3 2 29 29 H 1.08001 * 126.64575 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47282 * 84.14337 * 10 9 7 31 31 H 1.09003 * 109.46762 * 204.14361 * 10 9 7 32 32 H 1.09001 * 109.47375 * 324.14274 * 10 9 7 33 33 H 1.09004 * 109.47388 * 60.00255 * 13 11 9 34 34 H 1.09007 * 109.46976 * 180.02562 * 13 11 9 35 35 H 1.09002 * 109.47152 * 300.00100 * 13 11 9 36 36 H 0.97000 * 119.99818 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1628 1.0986 5 6 2.7378 3.4179 0.6532 6 6 2.7238 3.3776 -0.7116 7 6 3.1093 4.4707 -1.6101 8 8 3.3683 5.5695 -1.1554 9 7 3.1713 4.2600 -2.9399 10 6 2.7892 2.9588 -3.4938 11 6 3.6208 5.3323 -3.8312 12 1 3.8593 6.2181 -3.2425 13 6 2.5091 5.6668 -4.8276 14 6 4.8480 4.8810 -4.5806 15 1 5.2528 3.8945 -4.4097 16 6 5.4545 5.7282 -5.4837 17 7 4.9619 6.9298 -5.6914 18 14 6.9761 5.1692 -6.4121 19 1 7.3269 3.7862 -6.0005 20 1 6.7037 5.1978 -7.8716 21 1 8.1076 6.0795 -6.1017 22 8 2.2867 2.1582 -1.0887 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1845 1.8488 2.1260 29 1 3.0334 4.2535 1.2704 30 1 1.7085 2.9255 -3.6310 31 1 3.2822 2.8143 -4.4552 32 1 3.0929 2.1683 -2.8075 33 1 1.6214 5.9931 -4.2856 34 1 2.8437 6.4643 -5.4911 35 1 2.2702 4.7811 -5.4163 36 1 5.3884 7.5256 -6.3270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112733776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = -24.680110 kcal Electronic energy + Delta-G solvation = -18624.559898 eV Core-core repulsion = 15689.635106 eV Total energy + Delta-G solvation = -2934.924792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.51588 -38.79982 -35.47129 -34.32920 -32.90050 -32.58724 -29.87450 -28.30788 -26.15116 -25.24125 -24.32748 -22.30720 -21.20263 -20.33313 -19.10646 -16.98342 -16.45127 -16.07636 -15.80365 -15.30344 -14.59872 -14.29978 -14.14936 -13.38326 -13.17320 -12.96502 -12.77496 -12.56981 -12.41581 -12.33475 -11.74728 -11.60163 -11.36483 -11.17457 -11.02706 -10.84208 -10.71763 -10.26475 -10.19355 -9.81666 -9.38038 -9.17193 -8.45379 -8.33222 -7.62628 -6.09073 -4.17287 1.40169 2.52698 2.88030 3.25733 3.33667 3.36967 3.78125 3.92846 4.38701 4.58723 4.84477 5.00614 5.07395 5.19274 5.22964 5.29347 5.57407 5.64207 5.78388 5.90113 5.95108 6.01043 6.07817 6.13928 6.46752 6.56177 6.75147 6.82803 7.02379 7.11369 7.39074 7.50250 7.68875 7.98954 8.15219 8.43588 8.75646 8.93666 9.49013 10.96389 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.005375 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.949570 B = 5207.916180 C = 5413.468272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.004 4.004 4 C -0.218 4.218 5 C -0.138 4.138 6 C -0.054 4.054 7 C 0.583 3.417 8 O -0.534 6.534 9 N -0.578 5.578 10 C 0.081 3.919 11 C 0.256 3.744 12 H 0.066 0.934 13 C -0.146 4.146 14 C -0.527 4.527 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.152 6.152 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.012 0.988 34 H 0.095 0.905 35 H 0.030 0.970 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -13.354 8.998 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.056 4.056 4 C -0.237 4.237 5 C -0.159 4.159 6 C -0.107 4.107 7 C 0.369 3.631 8 O -0.414 6.414 9 N -0.308 5.308 10 C -0.062 4.062 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.204 4.204 14 C -0.566 4.566 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.048 6.048 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.449 -12.680 8.743 17.109 hybrid contribution 0.846 -0.272 -0.346 0.954 sum -6.603 -12.952 8.397 16.789 Atomic orbital electron populations 1.21791 0.93887 1.02228 1.02857 1.20112 0.96393 0.87469 1.04160 1.22808 1.02676 0.95239 0.84918 1.21476 1.08472 0.94451 0.99339 1.21864 1.02105 0.98763 0.93158 1.22623 1.07932 0.85174 0.94936 1.16754 0.78964 0.85319 0.82034 1.90824 1.51990 1.22737 1.75818 1.48240 1.62003 1.15047 1.05468 1.21794 0.99193 0.84602 1.00633 1.19068 0.92285 0.85782 0.87200 0.91663 1.22085 0.96243 1.01889 1.00232 1.21346 1.10748 1.01361 1.23129 0.92071 1.24895 0.97466 0.94749 0.96620 1.69893 1.40162 1.07070 1.35341 0.86411 0.82657 0.78783 0.79377 1.19787 1.20883 1.20857 1.84320 1.64339 1.22298 1.33836 0.92074 0.91675 0.92172 0.89881 0.88923 0.83301 0.82613 0.93745 0.89697 0.91610 0.96862 0.88645 0.95037 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C 0.00 -0.06 6.57 -35.41 -0.23 -0.29 16 4 C -0.22 -2.85 10.77 -39.89 -0.43 -3.28 16 5 C -0.14 -2.24 10.63 -39.39 -0.42 -2.66 16 6 C -0.05 -1.02 6.77 -36.80 -0.25 -1.27 16 7 C 0.58 13.27 7.64 -12.86 -0.10 13.18 16 8 O -0.53 -13.79 16.20 5.19 0.08 -13.70 16 9 N -0.58 -13.21 2.75 -176.82 -0.49 -13.70 16 10 C 0.08 1.51 8.56 59.84 0.51 2.03 16 11 C 0.26 6.71 2.63 -69.08 -0.18 6.53 16 12 H 0.07 1.95 6.90 -51.93 -0.36 1.60 16 13 C -0.15 -3.56 8.97 37.15 0.33 -3.23 16 14 C -0.53 -14.42 7.95 -34.44 -0.27 -14.69 16 15 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 O -0.15 -2.45 7.29 4.99 0.04 -2.42 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.62 7.11 -51.93 -0.37 1.25 16 32 H 0.07 1.13 5.41 -51.93 -0.28 0.85 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 2.52 6.07 -51.92 -0.32 2.21 16 35 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -31.14 302.59 -6.20 -37.34 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.05 Total: -0.32 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.94 Total: -3.34 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.14 Total: -38.19 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.12 Total: -16.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.14 -6.20 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112733776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.660 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds