Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47175 * 2 1 4 4 C 1.35135 * 125.61601 * 89.99915 * 3 2 1 5 5 C 1.40364 * 107.11557 * 180.02562 * 4 3 2 6 6 C 1.36542 * 106.70880 * 359.97438 * 5 4 3 7 7 C 1.46656 * 125.98963 * 179.97438 * 6 5 4 8 8 O 1.21697 * 120.00029 * 353.41314 * 7 6 5 9 9 N 1.34781 * 120.00068 * 173.68784 * 7 6 5 10 10 C 1.46494 * 119.99884 * 3.05569 * 9 7 6 11 11 C 1.46504 * 119.99797 * 183.05724 * 9 7 6 12 12 H 1.09002 * 109.47279 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.46943 * 239.99771 * 11 9 7 14 14 C 1.50699 * 109.46716 * 120.00044 * 11 9 7 15 15 H 1.07995 * 120.00632 * 359.97438 * 14 11 9 16 16 C 1.37881 * 119.99687 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00063 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47249 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47157 * 119.99812 * 18 16 14 21 21 H 1.48500 * 109.47178 * 239.99756 * 18 16 14 22 22 O 1.33933 * 125.61959 * 270.31426 * 3 2 1 23 23 H 1.09001 * 109.47601 * 59.99930 * 1 2 3 24 24 H 1.08999 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47366 * 299.99770 * 1 2 3 26 26 H 1.08999 * 109.46904 * 240.00262 * 2 1 3 27 27 H 1.08998 * 109.47107 * 119.99979 * 2 1 3 28 28 H 1.07996 * 126.44196 * 0.05648 * 4 3 2 29 29 H 1.08001 * 126.64575 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47282 * 84.14337 * 10 9 7 31 31 H 1.09003 * 109.46762 * 204.14361 * 10 9 7 32 32 H 1.09001 * 109.47375 * 324.14274 * 10 9 7 33 33 H 1.09004 * 109.47388 * 60.00255 * 13 11 9 34 34 H 1.09007 * 109.46976 * 180.02562 * 13 11 9 35 35 H 1.09002 * 109.47152 * 300.00100 * 13 11 9 36 36 H 0.97000 * 119.99818 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1628 1.0986 5 6 2.7378 3.4179 0.6532 6 6 2.7238 3.3776 -0.7116 7 6 3.1093 4.4707 -1.6101 8 8 3.3683 5.5695 -1.1554 9 7 3.1713 4.2600 -2.9399 10 6 2.7892 2.9588 -3.4938 11 6 3.6208 5.3323 -3.8312 12 1 3.8593 6.2181 -3.2425 13 6 2.5091 5.6668 -4.8276 14 6 4.8480 4.8810 -4.5806 15 1 5.2528 3.8945 -4.4097 16 6 5.4545 5.7282 -5.4837 17 7 4.9619 6.9298 -5.6914 18 14 6.9761 5.1692 -6.4121 19 1 7.3269 3.7862 -6.0005 20 1 6.7037 5.1978 -7.8716 21 1 8.1076 6.0795 -6.1017 22 8 2.2867 2.1582 -1.0887 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1845 1.8488 2.1260 29 1 3.0334 4.2535 1.2704 30 1 1.7085 2.9255 -3.6310 31 1 3.2822 2.8143 -4.4552 32 1 3.0929 2.1683 -2.8075 33 1 1.6214 5.9931 -4.2856 34 1 2.8437 6.4643 -5.4911 35 1 2.2702 4.7811 -5.4163 36 1 5.3884 7.5256 -6.3270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112733776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = -43.600608 kcal Electronic energy + Delta-G solvation = -18625.380352 eV Core-core repulsion = 15689.635106 eV Total energy + Delta-G solvation = -2935.745246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.72634 -40.56438 -37.33958 -35.27300 -34.71534 -33.82841 -31.72236 -29.58051 -27.76005 -27.34527 -25.43593 -23.62461 -22.52561 -21.63991 -20.72457 -18.69311 -18.26459 -17.52793 -17.43044 -16.72838 -16.17193 -15.82463 -15.19786 -14.97687 -14.47752 -14.24355 -14.15031 -14.02059 -13.91351 -13.56076 -13.23152 -13.04725 -12.79460 -12.76826 -12.65209 -12.40817 -12.25055 -12.13689 -11.86341 -11.26166 -11.14292 -11.00027 -10.56381 -9.67849 -9.31419 -8.17935 -6.35101 0.06859 1.38538 1.40881 1.42314 1.53862 1.63422 2.14455 2.30270 2.45289 3.10201 3.51010 3.84593 3.96696 4.26120 4.37202 4.40695 4.54707 4.61171 4.64217 4.69109 4.83807 4.86492 4.90012 4.98401 5.05766 5.08305 5.11560 5.37860 5.40180 5.47281 5.53132 5.60304 5.90141 6.02824 6.09467 6.61594 6.70700 7.10079 7.36901 8.87251 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.005375 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.949570 B = 5207.916180 C = 5413.468272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C 0.015 3.985 4 C -0.219 4.219 5 C -0.127 4.127 6 C -0.098 4.098 7 C 0.576 3.424 8 O -0.584 6.584 9 N -0.588 5.588 10 C 0.085 3.915 11 C 0.260 3.740 12 H 0.014 0.986 13 C -0.131 4.131 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.283 1.283 22 O -0.160 6.160 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.187 0.813 29 H 0.156 0.844 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 -16.630 9.718 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.037 4.037 4 C -0.238 4.238 5 C -0.148 4.148 6 C -0.150 4.150 7 C 0.365 3.635 8 O -0.467 6.467 9 N -0.316 5.316 10 C -0.057 4.057 11 C 0.158 3.842 12 H 0.032 0.968 13 C -0.190 4.190 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.209 1.209 22 O -0.056 6.056 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.205 0.795 29 H 0.174 0.826 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.879 -15.993 9.458 20.182 hybrid contribution 0.896 0.651 -0.447 1.194 sum -6.983 -15.342 9.011 19.114 Atomic orbital electron populations 1.21795 0.92981 1.03662 1.02186 1.20435 0.96953 0.84531 1.06190 1.23842 0.99536 0.96398 0.83959 1.21855 1.07979 0.92698 1.01269 1.22158 1.00189 1.00139 0.92309 1.21787 1.12632 0.85879 0.94693 1.17236 0.78057 0.85970 0.82246 1.90769 1.54244 1.25058 1.76675 1.48227 1.62136 1.15718 1.05549 1.21922 1.00259 0.83026 1.00513 1.18715 0.93021 0.85357 0.87077 0.96758 1.21878 0.95783 1.01765 0.99570 1.21549 1.11502 1.01461 1.23528 0.92142 1.25751 1.00411 0.94706 0.97409 1.70026 1.41480 1.08078 1.35829 0.85341 0.78535 0.78414 0.78319 1.19028 1.19711 1.20941 1.84251 1.64607 1.21528 1.35260 0.93645 0.89237 0.92012 0.88956 0.85807 0.79542 0.82631 0.91869 0.90203 0.89899 0.96179 0.90839 0.93356 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.04 -0.56 6.47 29.85 0.19 -0.37 16 3 C 0.01 0.34 6.57 24.97 0.16 0.50 16 4 C -0.22 -5.01 10.77 22.07 0.24 -4.78 16 5 C -0.13 -4.02 10.63 22.39 0.24 -3.78 16 6 C -0.10 -3.69 6.77 24.07 0.16 -3.52 16 7 C 0.58 27.33 7.64 86.44 0.66 27.99 16 8 O -0.58 -32.14 16.20 -4.34 -0.07 -32.21 16 9 N -0.59 -27.68 2.75 -831.55 -2.29 -29.97 16 10 C 0.08 3.12 8.56 127.77 1.09 4.22 16 11 C 0.26 14.19 2.63 44.24 0.12 14.31 16 12 H 0.01 0.93 6.90 -2.39 -0.02 0.91 16 13 C -0.13 -6.60 8.97 71.98 0.65 -5.96 16 14 C -0.54 -30.33 7.95 25.60 0.20 -30.13 16 15 H 0.06 3.31 7.43 -2.91 -0.02 3.29 16 16 C 0.02 0.95 5.30 84.65 0.45 1.40 16 17 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 18 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 O -0.16 -4.91 7.29 -5.06 -0.04 -4.95 16 23 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.16 4.81 8.06 -2.91 -0.02 4.78 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 3.00 7.11 -2.39 -0.02 2.98 16 32 H 0.08 2.76 5.41 -2.39 -0.01 2.75 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 4.02 6.07 -2.38 -0.01 4.01 16 35 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.98 302.59 5.82 -65.16 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.07 Total: 10.56 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 4.88 Total: -1.11 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.05 Total: -82.94 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.11 Total: -37.15 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.98 5.82 -65.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112733776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.562 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds