Wall clock time and date at job start Mon Mar 30 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46962 * 2 1 4 4 N 1.46292 * 114.00151 * 179.97438 * 3 2 1 5 5 C 1.46907 * 111.00249 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47530 * 186.75542 * 5 4 3 7 7 C 1.53007 * 109.46747 * 306.75422 * 5 4 3 8 8 C 1.50697 * 109.46918 * 66.75345 * 5 4 3 9 9 C 1.38308 * 119.93175 * 310.01639 * 8 5 4 10 10 C 1.38094 * 120.06766 * 180.02562 * 9 8 5 11 11 C 1.38887 * 119.93243 * 0.27177 * 10 9 8 12 12 O 1.35750 * 120.06875 * 179.72696 * 11 10 9 13 13 C 1.34827 * 116.99951 * 5.41854 * 12 11 10 14 14 H 1.07996 * 120.00179 * 354.87994 * 13 12 11 15 15 C 1.38654 * 120.00000 * 174.88037 * 13 12 11 16 16 N 1.31565 * 120.00012 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00372 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46767 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47309 * 120.00050 * 17 15 13 20 20 H 1.48497 * 109.47297 * 240.00281 * 17 15 13 21 21 C 1.38879 * 119.85945 * 359.47638 * 11 10 9 22 22 C 1.38102 * 119.93054 * 0.52255 * 21 11 10 23 23 H 1.08995 * 109.47414 * 299.99720 * 1 2 3 24 24 H 1.08999 * 109.46984 * 60.00539 * 1 2 3 25 25 H 1.09002 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47414 * 240.00280 * 2 1 3 27 27 H 1.08999 * 109.46984 * 119.99461 * 2 1 3 28 28 H 1.00897 * 111.00322 * 303.95323 * 4 3 2 29 29 H 1.09002 * 109.46703 * 179.97438 * 7 5 4 30 30 H 1.08993 * 109.47177 * 299.99694 * 7 5 4 31 31 H 1.08996 * 109.47007 * 59.99800 * 7 5 4 32 32 H 1.07992 * 119.96355 * 359.97438 * 9 8 5 33 33 H 1.08004 * 120.03825 * 180.02562 * 10 9 8 34 34 H 0.96990 * 120.00244 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.03632 * 180.25633 * 21 11 10 36 36 H 1.08002 * 119.96605 * 179.74585 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4647 1.4629 0.0006 5 6 3.8812 2.8717 -0.0001 6 1 4.9629 2.9308 -0.1205 7 6 3.1985 3.6047 -1.1566 8 6 3.4852 3.5131 1.3048 9 6 2.1919 3.3778 1.7759 10 6 1.8259 3.9649 2.9710 11 6 2.7565 4.6965 3.6974 12 8 2.3982 5.2794 4.8699 13 6 1.1581 5.0176 5.3297 14 1 0.4714 4.4377 4.7310 15 6 0.7644 5.4930 6.5713 16 7 1.6008 6.1999 7.3004 17 14 -0.9539 5.1310 7.2082 18 1 -1.6937 4.3236 6.2051 19 1 -0.8604 4.3728 8.4816 20 1 -1.6736 6.4083 7.4443 21 6 4.0558 4.8261 3.2243 22 6 4.4157 4.2366 2.0284 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8664 0.9671 0.7822 29 1 3.5072 4.6501 -1.1568 30 1 3.4849 3.1408 -2.1004 31 1 2.1168 3.5457 -1.0362 32 1 1.4673 2.8132 1.2080 33 1 0.8159 3.8586 3.3386 34 1 1.3255 6.5322 8.1691 35 1 4.7829 5.3908 3.7889 36 1 5.4249 4.3404 1.6580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134254510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:45 Heat of formation + Delta-G solvation = -7.784899 kcal Electronic energy + Delta-G solvation = -18251.694050 eV Core-core repulsion = 15317.501889 eV Total energy + Delta-G solvation = -2934.192161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.20392 -37.63512 -36.35058 -34.10042 -32.22386 -30.80375 -30.12580 -28.20780 -27.77998 -25.32667 -22.86696 -22.34908 -21.76937 -19.92987 -18.00280 -17.21019 -16.93682 -15.81997 -15.32620 -14.77082 -14.49446 -14.13827 -13.98198 -13.61078 -13.35963 -12.86841 -12.70207 -12.52694 -12.33940 -12.01148 -11.76995 -11.72015 -11.54057 -11.30486 -11.10278 -10.89416 -10.66919 -10.57784 -10.43309 -10.10057 -9.32486 -8.85136 -8.49279 -8.15927 -7.17453 -6.46427 -4.05114 2.22846 2.27714 2.88841 3.11323 3.12614 3.18214 3.95586 4.56188 4.88879 5.06108 5.07912 5.19858 5.22013 5.27018 5.38284 5.45031 5.58191 5.71384 5.81210 5.88793 5.89983 6.01538 6.10566 6.16025 6.22360 6.46056 6.51056 6.69684 6.73345 6.96941 7.05965 7.24186 7.35321 7.44018 7.48068 7.84033 7.99283 8.99464 9.69815 10.71737 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.005634 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.093141 B = 4968.707106 C = 5961.193307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.243 6.243 4 N -0.500 5.500 5 C 0.134 3.866 6 H 0.099 0.901 7 C -0.131 4.131 8 C -0.225 4.225 9 C -0.056 4.056 10 C -0.237 4.237 11 C 0.156 3.844 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.197 4.197 22 C -0.066 4.066 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.334 0.666 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -9.398 -12.774 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.252 6.252 4 N -0.169 5.169 5 C 0.025 3.975 6 H 0.117 0.883 7 C -0.189 4.189 8 C -0.227 4.227 9 C -0.075 4.075 10 C -0.257 4.257 11 C 0.102 3.898 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.216 4.216 22 C -0.085 4.085 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.022 -9.025 -13.092 15.934 hybrid contribution -0.927 -0.091 1.468 1.738 sum 0.095 -9.115 -11.625 14.773 Atomic orbital electron populations 1.21745 0.93695 1.02203 1.03171 1.22361 0.94706 0.85261 1.00070 1.90781 1.12896 1.24732 1.96808 1.66908 0.90448 1.13935 1.45560 1.20632 0.98757 0.85241 0.92906 0.88315 1.21675 1.01580 0.99099 0.96519 1.19937 0.95370 1.08355 0.99013 1.21019 0.95256 0.96510 0.94676 1.21203 1.00710 1.05867 0.97893 1.19443 0.92757 0.90438 0.87160 1.83973 1.33379 1.59984 1.30840 1.21378 0.87635 1.35608 1.02114 0.89060 1.25295 0.99937 0.96241 0.95066 1.70048 1.35196 1.32934 1.11602 0.85649 0.80260 0.78500 0.79045 1.19114 1.20115 1.20090 1.20177 0.94603 1.07984 0.98878 1.20523 0.97842 0.96396 0.93773 0.91797 0.91887 0.91130 0.93064 0.93759 0.85101 0.92435 0.92667 0.91932 0.85724 0.85774 0.92067 0.86629 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.05 0.61 7.11 37.16 0.26 0.87 16 3 O -0.24 -3.46 7.10 -13.92 -0.10 -3.56 16 4 N -0.50 -6.65 7.11 -5.65 -0.04 -6.69 16 5 C 0.13 1.85 3.50 -68.86 -0.24 1.61 16 6 H 0.10 1.19 7.91 -51.93 -0.41 0.78 16 7 C -0.13 -1.74 9.04 37.16 0.34 -1.41 16 8 C -0.22 -3.88 4.89 -104.57 -0.51 -4.39 16 9 C -0.06 -1.09 8.83 -39.61 -0.35 -1.44 16 10 C -0.24 -5.35 9.17 -39.39 -0.36 -5.72 16 11 C 0.16 3.85 6.65 -39.10 -0.26 3.59 16 12 O -0.18 -5.18 9.76 0.06 0.00 -5.18 16 13 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 14 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 17 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.20 -4.23 9.99 -39.39 -0.39 -4.62 16 22 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.33 4.20 8.92 -39.29 -0.35 3.85 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.93 7.31 -51.93 -0.38 0.55 16 32 H 0.13 2.29 5.49 -52.49 -0.29 2.00 16 33 H 0.12 2.84 5.64 -52.48 -0.30 2.54 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.11 1.60 7.97 -52.49 -0.42 1.18 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -30.84 304.40 -6.07 -36.91 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.93 Total: 6.98 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.32 Total: -24.00 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.72 Total: -31.45 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.10 Total: -8.74 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.84 -6.07 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134254510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.124 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds