Wall clock time and date at job start Mon Mar 30 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46962 * 2 1 4 4 N 1.46292 * 114.00151 * 179.97438 * 3 2 1 5 5 C 1.46907 * 111.00249 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47530 * 186.75542 * 5 4 3 7 7 C 1.53007 * 109.46747 * 306.75422 * 5 4 3 8 8 C 1.50697 * 109.46918 * 66.75345 * 5 4 3 9 9 C 1.38308 * 119.93175 * 310.01639 * 8 5 4 10 10 C 1.38094 * 120.06766 * 180.02562 * 9 8 5 11 11 C 1.38887 * 119.93243 * 0.27177 * 10 9 8 12 12 O 1.35750 * 120.06875 * 179.72696 * 11 10 9 13 13 C 1.34827 * 116.99951 * 5.41854 * 12 11 10 14 14 H 1.07996 * 120.00179 * 354.87994 * 13 12 11 15 15 C 1.38654 * 120.00000 * 174.88037 * 13 12 11 16 16 N 1.31565 * 120.00012 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00372 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46767 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47309 * 120.00050 * 17 15 13 20 20 H 1.48497 * 109.47297 * 240.00281 * 17 15 13 21 21 C 1.38879 * 119.85945 * 359.47638 * 11 10 9 22 22 C 1.38102 * 119.93054 * 0.52255 * 21 11 10 23 23 H 1.08995 * 109.47414 * 299.99720 * 1 2 3 24 24 H 1.08999 * 109.46984 * 60.00539 * 1 2 3 25 25 H 1.09002 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47414 * 240.00280 * 2 1 3 27 27 H 1.08999 * 109.46984 * 119.99461 * 2 1 3 28 28 H 1.00897 * 111.00322 * 303.95323 * 4 3 2 29 29 H 1.09002 * 109.46703 * 179.97438 * 7 5 4 30 30 H 1.08993 * 109.47177 * 299.99694 * 7 5 4 31 31 H 1.08996 * 109.47007 * 59.99800 * 7 5 4 32 32 H 1.07992 * 119.96355 * 359.97438 * 9 8 5 33 33 H 1.08004 * 120.03825 * 180.02562 * 10 9 8 34 34 H 0.96990 * 120.00244 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.03632 * 180.25633 * 21 11 10 36 36 H 1.08002 * 119.96605 * 179.74585 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4647 1.4629 0.0006 5 6 3.8812 2.8717 -0.0001 6 1 4.9629 2.9308 -0.1205 7 6 3.1985 3.6047 -1.1566 8 6 3.4852 3.5131 1.3048 9 6 2.1919 3.3778 1.7759 10 6 1.8259 3.9649 2.9710 11 6 2.7565 4.6965 3.6974 12 8 2.3982 5.2794 4.8699 13 6 1.1581 5.0176 5.3297 14 1 0.4714 4.4377 4.7310 15 6 0.7644 5.4930 6.5713 16 7 1.6008 6.1999 7.3004 17 14 -0.9539 5.1310 7.2082 18 1 -1.6937 4.3236 6.2051 19 1 -0.8604 4.3728 8.4816 20 1 -1.6736 6.4083 7.4443 21 6 4.0558 4.8261 3.2243 22 6 4.4157 4.2366 2.0284 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8664 0.9671 0.7822 29 1 3.5072 4.6501 -1.1568 30 1 3.4849 3.1408 -2.1004 31 1 2.1168 3.5457 -1.0362 32 1 1.4673 2.8132 1.2080 33 1 0.8159 3.8586 3.3386 34 1 1.3255 6.5322 8.1691 35 1 4.7829 5.3908 3.7889 36 1 5.4249 4.3404 1.6580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134254510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:45 Heat of formation + Delta-G solvation = -27.681359 kcal Electronic energy + Delta-G solvation = -18252.556825 eV Core-core repulsion = 15317.501889 eV Total energy + Delta-G solvation = -2935.054936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.90518 -39.11720 -37.66848 -35.40401 -34.20962 -31.86186 -31.70819 -29.70953 -28.89275 -27.33992 -24.13346 -23.51428 -23.36258 -21.33145 -19.88967 -18.94540 -18.08101 -17.11739 -16.63726 -16.23818 -16.14557 -15.58281 -15.52744 -15.27223 -14.72818 -14.46271 -14.24269 -13.68346 -13.58224 -13.26093 -13.13600 -13.06247 -12.85768 -12.65928 -12.47112 -12.28070 -12.14499 -12.12091 -11.90533 -11.22216 -11.10625 -10.82553 -9.80249 -9.63640 -8.92105 -8.50968 -6.19279 0.57603 0.63112 1.31773 1.39949 1.50141 1.83685 2.14562 2.79189 3.13165 3.48340 3.85797 3.91858 4.11071 4.18529 4.22610 4.38398 4.47426 4.52102 4.56647 4.62323 4.76610 4.83184 4.99765 5.04384 5.06642 5.12749 5.16865 5.25988 5.29768 5.45294 5.52100 5.64236 5.73060 5.86917 5.99794 6.19972 6.36524 6.93774 7.74044 8.72425 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.005634 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.093141 B = 4968.707106 C = 5961.193307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.267 6.267 4 N -0.493 5.493 5 C 0.135 3.865 6 H 0.132 0.868 7 C -0.128 4.128 8 C -0.196 4.196 9 C -0.057 4.057 10 C -0.248 4.248 11 C 0.114 3.886 12 O -0.232 6.232 13 C -0.415 4.415 14 H 0.097 0.903 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.018 2.982 18 H -0.255 1.255 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.207 4.207 22 C -0.055 4.055 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.340 0.660 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.274 0.726 35 H 0.115 0.885 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -11.116 -15.233 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.275 6.275 4 N -0.162 5.162 5 C 0.026 3.974 6 H 0.150 0.850 7 C -0.186 4.186 8 C -0.198 4.198 9 C -0.075 4.075 10 C -0.267 4.267 11 C 0.064 3.936 12 O -0.138 6.138 13 C -0.491 4.491 14 H 0.114 0.886 15 C -0.219 4.219 16 N -0.557 5.557 17 Si 0.837 3.163 18 H -0.178 1.178 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.226 4.226 22 C -0.073 4.073 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.403 -10.775 -15.608 19.018 hybrid contribution -0.868 0.298 1.907 2.116 sum 0.536 -10.478 -13.701 17.256 Atomic orbital electron populations 1.21766 0.92930 1.03506 1.02365 1.22534 0.95322 0.84131 1.00753 1.90746 1.13293 1.26593 1.96916 1.66880 0.90275 1.13239 1.45810 1.20859 1.00756 0.85217 0.90593 0.85040 1.21647 1.00275 0.99612 0.97059 1.20511 0.93968 1.05521 0.99845 1.21222 0.96786 0.96053 0.93468 1.21243 0.99946 1.06430 0.99120 1.19998 0.94658 0.92066 0.86892 1.83934 1.33948 1.62757 1.33194 1.21816 0.88104 1.36223 1.02923 0.88551 1.26582 1.04726 0.95735 0.94866 1.70182 1.37901 1.35213 1.12436 0.84542 0.74338 0.78800 0.78592 1.17801 1.19064 1.19082 1.20495 0.93429 1.08374 1.00328 1.21011 1.00067 0.94401 0.91862 0.93343 0.91894 0.88827 0.91858 0.93483 0.84467 0.91849 0.90781 0.93820 0.84517 0.87175 0.91740 0.86667 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.28 71.98 0.74 -1.92 16 2 C 0.05 1.01 7.11 71.98 0.51 1.52 16 3 O -0.27 -6.89 7.10 -50.14 -0.36 -7.24 16 4 N -0.49 -11.28 7.11 -171.79 -1.22 -12.50 16 5 C 0.14 3.14 3.50 44.17 0.15 3.30 16 6 H 0.13 2.33 7.91 -2.39 -0.02 2.31 16 7 C -0.13 -2.92 9.04 71.98 0.65 -2.27 16 8 C -0.20 -6.18 4.89 -19.83 -0.10 -6.28 16 9 C -0.06 -2.14 8.83 22.25 0.20 -1.95 16 10 C -0.25 -11.48 9.17 22.39 0.21 -11.27 16 11 C 0.11 5.87 6.65 22.58 0.15 6.02 16 12 O -0.23 -14.31 9.76 -22.71 -0.22 -14.53 16 13 C -0.41 -24.83 9.49 67.92 0.64 -24.19 16 14 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 15 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 16 N -0.92 -57.07 13.67 21.61 0.30 -56.78 16 17 Si 1.02 43.68 29.55 68.60 2.03 45.70 16 18 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 C -0.21 -8.88 9.99 22.39 0.22 -8.65 16 22 C -0.06 -1.80 9.66 22.25 0.21 -1.58 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.34 7.29 8.92 -89.70 -0.80 6.49 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.16 7.31 -2.39 -0.02 1.15 16 32 H 0.14 4.84 5.49 -2.91 -0.02 4.82 16 33 H 0.11 5.29 5.64 -2.91 -0.02 5.28 16 34 H 0.27 15.46 8.31 -92.72 -0.77 14.68 16 35 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.16 3.71 7.97 -2.91 -0.02 3.69 16 Total: -1.00 -71.33 304.40 4.87 -66.46 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.28 Total: 26.92 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 4.06 Total: -48.04 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.93 Total: -69.28 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.58 Total: -21.77 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.33 4.87 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134254510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.780 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds