Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47305 * 2 1 4 4 C 1.35134 * 125.61918 * 89.99998 * 3 2 1 5 5 C 1.40364 * 107.11302 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.64393 * 180.02562 * 5 4 3 7 7 C 1.36544 * 106.71075 * 359.97438 * 5 4 3 8 8 C 1.46656 * 125.98722 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00236 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99952 * 180.02562 * 8 7 5 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46950 * 325.00285 * 11 10 8 13 13 C 1.52995 * 109.46824 * 85.00531 * 11 10 8 14 14 C 1.50706 * 109.47053 * 205.00197 * 11 10 8 15 15 H 1.08001 * 119.99930 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99762 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00279 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99682 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47299 * 60.00109 * 18 16 14 20 20 H 1.48506 * 109.47208 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47183 * 299.99603 * 18 16 14 22 22 O 1.33940 * 125.61363 * 270.32094 * 3 2 1 23 23 H 1.09001 * 109.47190 * 300.00676 * 1 2 3 24 24 H 1.09002 * 109.46881 * 60.00019 * 1 2 3 25 25 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47190 * 239.99324 * 2 1 3 27 27 H 1.09002 * 109.46881 * 119.99981 * 2 1 3 28 28 H 1.07995 * 126.43861 * 0.03174 * 4 3 2 29 29 H 1.08995 * 109.47506 * 269.97507 * 6 5 4 30 30 H 1.09005 * 109.47168 * 29.97215 * 6 5 4 31 31 H 1.09000 * 109.47209 * 149.97193 * 6 5 4 32 32 H 0.96995 * 120.00018 * 0.27849 * 10 8 7 33 33 H 1.09002 * 109.47311 * 59.99668 * 13 11 10 34 34 H 1.09002 * 109.46959 * 179.97438 * 13 11 10 35 35 H 1.09003 * 109.47335 * 299.99547 * 13 11 10 36 36 H 0.96995 * 120.00082 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2948 2.1627 1.0985 5 6 2.7379 3.4179 0.6530 6 6 3.1505 4.5837 1.5141 7 6 2.7239 3.3774 -0.7118 8 6 3.1094 4.4705 -1.6103 9 8 3.4843 5.5329 -1.1502 10 7 3.0484 4.2985 -2.9456 11 6 3.4329 5.3907 -3.8432 12 1 3.1439 6.3438 -3.4003 13 6 4.9477 5.3659 -4.0567 14 6 2.7360 5.2207 -5.1686 15 1 2.0726 4.3832 -5.3263 16 6 2.9452 6.1344 -6.1796 17 7 3.7527 7.1546 -5.9873 18 14 2.0808 5.9241 -7.8221 19 1 0.6106 5.9492 -7.6146 20 1 2.4706 7.0311 -8.7321 21 1 2.4735 4.6253 -8.4255 22 8 2.2867 2.1581 -1.0889 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1843 1.8489 2.1259 29 1 2.2812 5.2074 1.7221 30 1 3.5650 4.2140 2.4520 31 1 3.9038 5.1730 0.9912 32 1 2.7457 3.4531 -3.3124 33 1 5.2367 4.4127 -4.4996 34 1 5.2338 6.1782 -4.7249 35 1 5.4519 5.4888 -3.0982 36 1 3.8996 7.7976 -6.6985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178625058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = -63.558052 kcal Electronic energy + Delta-G solvation = -18281.137870 eV Core-core repulsion = 15344.527203 eV Total energy + Delta-G solvation = -2936.610666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.73464 -40.42230 -36.90835 -35.29799 -34.87822 -34.31103 -31.37271 -30.05500 -28.40591 -27.37451 -25.33733 -23.41852 -22.25538 -21.66629 -20.67257 -19.52092 -18.00243 -17.51034 -17.21019 -16.50269 -16.11738 -15.60601 -15.25070 -15.16852 -14.46237 -14.41478 -14.10455 -13.96119 -13.72664 -13.61109 -13.35315 -13.04753 -12.94676 -12.89801 -12.76334 -12.35420 -12.31419 -12.17521 -11.89094 -11.18044 -11.04330 -10.64708 -10.60861 -9.98152 -9.38492 -8.20460 -6.38621 0.04981 1.35579 1.43574 1.46106 1.54032 1.67287 2.18828 2.32935 2.55936 3.09690 3.56417 3.80978 3.92523 4.25792 4.35556 4.39442 4.54642 4.63851 4.70586 4.76147 4.82187 4.87184 4.99178 5.02388 5.03742 5.15052 5.21165 5.34868 5.38191 5.48547 5.55907 5.61276 5.78874 6.00649 6.03308 6.65327 6.80141 7.19878 7.36770 8.85955 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.005395 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.430716 B = 5188.928817 C = 6027.464788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.023 3.977 4 C -0.221 4.221 5 C -0.093 4.093 6 C -0.091 4.091 7 C -0.115 4.115 8 C 0.584 3.416 9 O -0.568 6.568 10 N -0.696 5.696 11 C 0.270 3.730 12 H 0.006 0.994 13 C -0.133 4.133 14 C -0.553 4.553 15 H 0.069 0.931 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.975 3.025 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.264 1.264 22 O -0.174 6.174 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.189 0.811 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.014 0.986 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -15.479 12.823 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.029 4.029 4 C -0.240 4.240 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.166 4.166 8 C 0.371 3.629 9 O -0.451 6.451 10 N -0.343 5.343 11 C 0.167 3.833 12 H 0.024 0.976 13 C -0.192 4.192 14 C -0.590 4.590 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.189 1.189 22 O -0.071 6.071 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.206 0.794 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.625 -14.630 12.688 19.910 hybrid contribution -0.269 0.236 -1.065 1.124 sum -4.895 -14.394 11.624 19.138 Atomic orbital electron populations 1.21802 0.93021 1.03721 1.02130 1.20448 0.96940 0.84537 1.06222 1.23718 0.99470 0.96211 0.83505 1.21760 1.08536 0.92448 1.01229 1.20979 0.98824 0.98162 0.91623 1.20411 1.01907 0.93990 0.98467 1.21760 1.14082 0.86144 0.94632 1.17025 0.78134 0.85423 0.82288 1.90757 1.50763 1.26975 1.76609 1.46292 1.64659 1.18294 1.05046 1.18487 0.92511 0.84713 0.87597 0.97599 1.21903 0.97292 1.01428 0.98577 1.21457 1.28272 1.11824 0.97495 0.91254 1.25790 0.95598 0.94260 1.02638 1.70031 1.36739 1.13735 1.34761 0.85357 0.78645 0.78100 0.77989 1.19660 1.20739 1.18906 1.83999 1.65052 1.21841 1.36158 0.91852 0.93944 0.89107 0.89144 0.85474 0.79401 0.90622 0.88499 0.92237 0.76228 0.94242 0.90901 0.96674 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.90 71.98 0.71 -1.19 16 2 C -0.04 -0.62 6.47 29.85 0.19 -0.42 16 3 C 0.02 0.55 6.57 24.97 0.16 0.72 16 4 C -0.22 -5.16 10.73 22.07 0.24 -4.92 16 5 C -0.09 -2.92 6.20 -19.74 -0.12 -3.04 16 6 C -0.09 -2.61 9.82 71.24 0.70 -1.91 16 7 C -0.11 -4.31 7.13 24.07 0.17 -4.14 16 8 C 0.58 26.79 7.75 86.44 0.67 27.46 16 9 O -0.57 -29.33 14.40 -4.33 -0.06 -29.40 16 10 N -0.70 -32.58 5.07 -450.08 -2.28 -34.86 16 11 C 0.27 14.72 2.56 44.24 0.11 14.83 16 12 H 0.01 0.38 7.58 -2.39 -0.02 0.37 16 13 C -0.13 -7.02 9.26 71.98 0.67 -6.36 16 14 C -0.55 -30.42 8.73 25.60 0.22 -30.20 16 15 H 0.07 3.61 7.73 -2.91 -0.02 3.59 16 16 C 0.02 0.96 5.30 84.65 0.45 1.41 16 17 N -0.91 -53.01 11.32 21.45 0.24 -52.77 16 18 Si 0.98 42.69 29.54 68.60 2.03 44.71 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 22 O -0.17 -5.64 10.40 -5.11 -0.05 -5.70 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.06 2.07 6.45 -2.39 -0.02 2.06 16 32 H 0.40 16.94 8.29 -92.71 -0.77 16.17 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 4.12 6.07 -2.39 -0.01 4.11 16 35 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -68.80 308.20 4.36 -64.44 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.31 Total: 21.33 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.18 Total: -7.77 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.04 Total: -87.63 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.12 Total: -35.09 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.80 4.36 -64.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178625058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.882 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds