Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.37841 * 125.89851 * 269.69161 * 4 3 2 6 6 C 1.47104 * 127.02006 * 0.02562 * 5 4 3 7 7 O 1.21547 * 120.00540 * 0.02562 * 6 5 4 8 8 O 1.34787 * 119.99741 * 180.02562 * 6 5 4 9 9 C 1.46744 * 105.95019 * 179.97438 * 5 4 3 10 10 C 1.34428 * 106.37630 * 0.34183 * 9 5 4 11 11 N 1.34623 * 125.89425 * 89.99858 * 4 3 2 12 12 C 1.46503 * 124.81373 * 359.96521 * 11 4 3 13 13 C 1.52999 * 109.47111 * 84.99716 * 12 11 4 14 14 C 1.50703 * 109.47270 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99922 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99619 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46974 * 90.00250 * 18 16 14 20 20 H 1.48507 * 109.47123 * 209.99758 * 18 16 14 21 21 H 1.48495 * 109.47287 * 330.00180 * 18 16 14 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 0.96708 * 117.00346 * 180.02562 * 8 6 5 30 30 H 1.08004 * 126.80720 * 180.15374 * 9 5 4 31 31 H 1.07995 * 125.45971 * 179.79361 * 10 9 5 32 32 H 1.08992 * 109.47669 * 204.99691 * 12 11 4 33 33 H 1.09003 * 109.46763 * 325.00037 * 12 11 4 34 34 H 1.09004 * 109.47250 * 300.00458 * 13 12 11 35 35 H 1.09002 * 109.47689 * 60.00103 * 13 12 11 36 36 H 0.97003 * 120.00042 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3548 1.4485 1.1176 6 6 3.9221 1.4558 2.5235 7 8 2.7373 1.4564 2.7949 8 8 4.8396 1.4618 3.5109 9 6 5.7344 1.4450 0.6175 10 6 5.6512 1.4450 -0.7242 11 7 4.3368 1.4421 -1.0896 12 6 3.8533 1.4412 -2.4726 13 6 3.5656 2.8778 -2.9133 14 6 3.0677 2.8768 -4.3357 15 1 2.9662 1.9447 -4.8716 16 6 2.7418 4.0659 -4.9528 17 7 2.8650 5.2009 -4.3001 18 14 2.1254 4.0647 -6.7162 19 1 0.6454 3.9425 -6.7230 20 1 2.5203 5.3333 -7.3796 21 1 2.7202 2.9174 -7.4477 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.5072 1.4661 4.4191 30 1 6.6374 1.4458 1.2100 31 1 6.4904 1.4460 -1.4039 32 1 4.6127 1.0070 -3.1227 33 1 2.9390 0.8513 -2.5374 34 1 2.8062 3.3122 -2.2631 35 1 4.4799 3.4678 -2.8484 36 1 2.6360 6.0375 -4.7344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212865797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = -75.329509 kcal Electronic energy + Delta-G solvation = -18391.923882 eV Core-core repulsion = 15454.802767 eV Total energy + Delta-G solvation = -2937.121115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06732 -39.28009 -35.74245 -34.63004 -34.17455 -32.23483 -29.70251 -29.09745 -26.08825 -25.10740 -23.11471 -21.40448 -21.26473 -20.34775 -18.40599 -17.56191 -16.83825 -16.32737 -15.27441 -15.20308 -14.75815 -14.59169 -14.04902 -13.84914 -13.41917 -13.04818 -12.67080 -12.54537 -12.33084 -12.25048 -11.63309 -11.42101 -11.24322 -11.09871 -11.02136 -10.96503 -10.75185 -10.46944 -10.28162 -10.05090 -9.93740 -9.42953 -8.55059 -8.19558 -7.84197 -6.18963 -4.25293 1.84548 2.79424 3.14771 3.21439 3.28797 3.30890 3.64978 3.76250 4.31401 4.93551 5.17178 5.23071 5.27443 5.33531 5.46005 5.57143 5.66100 5.86871 5.95499 5.99725 6.03745 6.07964 6.23596 6.30303 6.34632 6.36930 6.53728 6.55250 6.81945 7.09017 7.33928 7.36293 7.60091 7.61255 7.79905 8.11069 8.33912 8.80282 9.40717 10.91930 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.005587 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.663604 B = 5010.702551 C = 5600.269114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.069 4.069 4 C 0.136 3.864 5 C -0.252 4.252 6 C 0.559 3.441 7 O -0.536 6.536 8 O -0.518 6.518 9 C -0.157 4.157 10 C -0.017 4.017 11 N -0.418 5.418 12 C 0.095 3.905 13 C 0.012 3.988 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.404 0.596 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -8.877 9.526 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.106 4.106 4 C 0.014 3.986 5 C -0.260 4.260 6 C 0.407 3.593 7 O -0.427 6.427 8 O -0.328 6.328 9 C -0.180 4.180 10 C -0.144 4.144 11 N -0.089 5.089 12 C -0.024 4.024 13 C -0.025 4.025 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.260 0.740 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.684 -8.688 8.784 12.469 hybrid contribution -0.341 0.239 -0.410 0.585 sum 1.342 -8.449 8.374 11.971 Atomic orbital electron populations 1.21743 0.95450 1.01340 1.02176 1.21367 0.95943 0.95701 1.01750 1.20503 0.86873 0.98349 1.04924 1.20532 0.93421 0.99529 0.85094 1.19137 0.93916 1.24801 0.88141 1.19902 0.82717 0.71334 0.85334 1.90825 1.18382 1.48942 1.84592 1.84614 1.42532 1.86568 1.19117 1.21875 0.95409 1.07580 0.93131 1.21740 0.86135 1.10560 0.95979 1.44235 1.05667 1.51652 1.07393 1.22527 1.00015 1.03364 0.76531 1.19456 0.98047 0.88133 0.96862 1.20977 1.45422 0.93209 0.97335 0.92250 1.24993 0.95253 0.95449 0.98309 1.69965 1.47531 0.97850 1.37223 0.86516 0.79198 0.77626 0.84237 1.20443 1.21054 1.19732 0.92411 0.92963 0.92491 0.92464 0.91875 0.88226 0.89816 0.73966 0.83809 0.81787 0.89773 0.90034 0.95650 0.95700 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.15 0.37 -1.54 16 2 C -0.11 -1.59 5.92 -26.74 -0.16 -1.75 16 3 C -0.07 -1.16 4.67 -27.88 -0.13 -1.29 16 4 C 0.14 2.44 6.18 -81.51 -0.50 1.94 16 5 C -0.25 -4.41 6.33 -103.01 -0.65 -5.06 16 6 C 0.56 9.19 8.32 34.33 0.29 9.47 16 7 O -0.54 -9.64 15.65 -19.30 -0.30 -9.94 16 8 O -0.52 -6.67 13.33 -40.73 -0.54 -7.21 16 9 C -0.16 -2.49 11.00 -37.49 -0.41 -2.91 16 10 C -0.02 -0.28 11.30 -16.85 -0.19 -0.47 16 11 N -0.42 -7.48 2.68 -112.25 -0.30 -7.78 16 12 C 0.10 1.79 5.43 -4.04 -0.02 1.77 16 13 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 14 C -0.53 -13.90 9.11 -34.44 -0.31 -14.21 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.81 8.07 -51.93 -0.42 0.40 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 28 H 0.08 1.49 7.07 -51.93 -0.37 1.13 16 29 H 0.40 3.14 9.11 45.56 0.42 3.56 16 30 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 33 H 0.08 1.46 7.67 -51.93 -0.40 1.06 16 34 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -30.84 311.69 -7.13 -37.97 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.42 Total: 3.90 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.97 Total: -12.28 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.44 Total: -32.69 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.85 Total: -17.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.84 -7.13 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212865797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.364 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds