Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.37841 * 125.89851 * 269.69161 * 4 3 2 6 6 C 1.47104 * 127.02006 * 0.02562 * 5 4 3 7 7 O 1.21547 * 120.00540 * 0.02562 * 6 5 4 8 8 O 1.34787 * 119.99741 * 180.02562 * 6 5 4 9 9 C 1.46744 * 105.95019 * 179.97438 * 5 4 3 10 10 C 1.34428 * 106.37630 * 0.34183 * 9 5 4 11 11 N 1.34623 * 125.89425 * 89.99858 * 4 3 2 12 12 C 1.46503 * 124.81373 * 359.96521 * 11 4 3 13 13 C 1.52999 * 109.47111 * 84.99716 * 12 11 4 14 14 C 1.50703 * 109.47270 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99922 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99619 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46974 * 90.00250 * 18 16 14 20 20 H 1.48507 * 109.47123 * 209.99758 * 18 16 14 21 21 H 1.48495 * 109.47287 * 330.00180 * 18 16 14 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 0.96708 * 117.00346 * 180.02562 * 8 6 5 30 30 H 1.08004 * 126.80720 * 180.15374 * 9 5 4 31 31 H 1.07995 * 125.45971 * 179.79361 * 10 9 5 32 32 H 1.08992 * 109.47669 * 204.99691 * 12 11 4 33 33 H 1.09003 * 109.46763 * 325.00037 * 12 11 4 34 34 H 1.09004 * 109.47250 * 300.00458 * 13 12 11 35 35 H 1.09002 * 109.47689 * 60.00103 * 13 12 11 36 36 H 0.97003 * 120.00042 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3548 1.4485 1.1176 6 6 3.9221 1.4558 2.5235 7 8 2.7373 1.4564 2.7949 8 8 4.8396 1.4618 3.5109 9 6 5.7344 1.4450 0.6175 10 6 5.6512 1.4450 -0.7242 11 7 4.3368 1.4421 -1.0896 12 6 3.8533 1.4412 -2.4726 13 6 3.5656 2.8778 -2.9133 14 6 3.0677 2.8768 -4.3357 15 1 2.9662 1.9447 -4.8716 16 6 2.7418 4.0659 -4.9528 17 7 2.8650 5.2009 -4.3001 18 14 2.1254 4.0647 -6.7162 19 1 0.6454 3.9425 -6.7230 20 1 2.5203 5.3333 -7.3796 21 1 2.7202 2.9174 -7.4477 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.5072 1.4661 4.4191 30 1 6.6374 1.4458 1.2100 31 1 6.4904 1.4460 -1.4039 32 1 4.6127 1.0070 -3.1227 33 1 2.9390 0.8513 -2.5374 34 1 2.8062 3.3122 -2.2631 35 1 4.4799 3.4678 -2.8484 36 1 2.6360 6.0375 -4.7344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212865797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = -92.908622 kcal Electronic energy + Delta-G solvation = -18392.686170 eV Core-core repulsion = 15454.802767 eV Total energy + Delta-G solvation = -2937.883402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39133 -40.51915 -36.92906 -36.01831 -35.80110 -34.00357 -30.95654 -30.76203 -27.43267 -26.75963 -24.57751 -23.00717 -22.51549 -21.62698 -19.77416 -18.89161 -18.47252 -17.86287 -16.70413 -16.56214 -16.43676 -15.86196 -15.49630 -15.21382 -14.74575 -14.45883 -14.18504 -14.00948 -13.76734 -13.53800 -13.24779 -12.87820 -12.74727 -12.56203 -12.41763 -12.24161 -12.13709 -12.05721 -11.74668 -11.65850 -11.45522 -11.32653 -10.62273 -9.58585 -9.14434 -8.25673 -6.38995 0.52207 1.41717 1.42295 1.50537 1.53960 1.85708 2.35834 2.38833 2.59027 3.09613 3.64083 3.94314 3.97096 4.14795 4.16303 4.32707 4.43342 4.48803 4.65923 4.67130 4.71450 4.81198 4.96679 5.00896 5.11648 5.18316 5.31770 5.36028 5.40618 5.41934 5.69053 5.73800 5.82100 6.03898 6.21084 6.35612 6.77304 7.21285 7.32156 8.86256 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.005587 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.663604 B = 5010.702551 C = 5600.269114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.063 4.063 4 C 0.114 3.886 5 C -0.269 4.269 6 C 0.562 3.438 7 O -0.557 6.557 8 O -0.507 6.507 9 C -0.153 4.153 10 C -0.025 4.025 11 N -0.427 5.427 12 C 0.112 3.888 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.074 0.926 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.257 1.257 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.427 0.573 30 H 0.170 0.830 31 H 0.190 0.810 32 H 0.104 0.896 33 H 0.090 0.910 34 H -0.007 1.007 35 H -0.005 1.005 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -10.367 9.170 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.101 4.101 4 C -0.007 4.007 5 C -0.277 4.277 6 C 0.410 3.590 7 O -0.451 6.451 8 O -0.320 6.320 9 C -0.176 4.176 10 C -0.151 4.151 11 N -0.099 5.099 12 C -0.008 4.008 13 C -0.016 4.016 14 C -0.580 4.580 15 H 0.092 0.908 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.181 1.181 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.288 0.712 30 H 0.187 0.813 31 H 0.207 0.793 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.202 -10.200 8.466 13.438 hybrid contribution -0.436 0.721 -0.174 0.861 sum 1.765 -9.479 8.292 12.717 Atomic orbital electron populations 1.21727 0.94102 1.02600 1.01958 1.21320 0.97075 0.93941 1.01693 1.20436 0.86747 0.99615 1.03340 1.20790 0.93944 1.00347 0.85612 1.19496 0.94822 1.24585 0.88778 1.19788 0.82643 0.70913 0.85665 1.90816 1.19346 1.49970 1.85004 1.84546 1.41484 1.85756 1.20235 1.22201 0.95535 1.06656 0.93213 1.22282 0.86010 1.09970 0.96816 1.44190 1.06435 1.52522 1.06799 1.22191 1.01289 0.99780 0.77588 1.19245 0.95459 0.91035 0.95862 1.21457 1.44519 0.93723 0.98277 0.90822 1.25951 0.95512 0.95103 1.02828 1.70111 1.49163 0.98593 1.39271 0.85413 0.78694 0.77879 0.78876 1.19898 1.21199 1.18119 0.92720 0.90935 0.92637 0.92074 0.92187 0.89363 0.91644 0.71247 0.81285 0.79254 0.87731 0.89121 0.98882 0.98643 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.91 71.98 0.71 -2.91 16 2 C -0.10 -2.94 5.92 30.59 0.18 -2.75 16 3 C -0.06 -2.18 4.67 29.85 0.14 -2.04 16 4 C 0.11 4.10 6.18 42.04 0.26 4.36 16 5 C -0.27 -9.20 6.33 -18.82 -0.12 -9.32 16 6 C 0.56 17.92 8.32 70.15 0.58 18.50 16 7 O -0.56 -19.89 15.65 19.68 0.31 -19.58 16 8 O -0.51 -11.99 13.33 -56.99 -0.76 -12.75 16 9 C -0.15 -4.60 11.00 23.62 0.26 -4.34 16 10 C -0.02 -0.76 11.30 83.11 0.94 0.18 16 11 N -0.43 -15.07 2.68 -509.05 -1.37 -16.43 16 12 C 0.11 4.14 5.43 86.38 0.47 4.61 16 13 C 0.02 1.06 5.30 29.85 0.16 1.22 16 14 C -0.54 -28.31 9.11 25.60 0.23 -28.08 16 15 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 0.26 5.46 84.65 0.46 0.72 16 17 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 18 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.69 8.07 -2.39 -0.02 1.67 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 3.20 6.50 -2.39 -0.02 3.18 16 28 H 0.06 2.45 7.07 -2.39 -0.02 2.43 16 29 H 0.43 5.63 9.11 -74.05 -0.67 4.96 16 30 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.10 3.44 8.11 -2.39 -0.02 3.42 16 33 H 0.09 3.18 7.67 -2.39 -0.02 3.16 16 34 H -0.01 -0.40 7.52 -2.39 -0.02 -0.41 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -66.58 311.69 5.18 -61.41 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.40 Total: 18.02 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.28 Total: -19.87 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.08 Total: -71.19 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.45 Total: -32.33 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -66.58 5.18 -61.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212865797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.503 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds