Wall clock time and date at job start Mon Mar 30 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48508 * 109.47083 * 239.99576 * 3 2 1 5 5 H 1.48502 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47487 * 119.99350 * 3 2 1 7 7 C 1.37875 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00625 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99756 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.03380 * 58.97544 * 9 7 2 11 11 C 1.53816 * 109.05006 * 299.99856 * 9 7 2 12 12 C 1.54169 * 111.96795 * 198.56365 * 11 9 7 13 13 C 1.50751 * 112.60958 * 318.48226 * 12 11 9 14 14 C 1.54434 * 109.02320 * 93.02062 * 13 12 11 15 15 N 1.39779 * 111.77237 * 282.59184 * 14 13 12 16 16 C 1.46897 * 111.00113 * 189.12745 * 15 14 13 17 17 C 1.52993 * 109.47275 * 77.14307 * 16 15 14 18 18 F 1.39896 * 109.47240 * 53.87637 * 17 16 15 19 19 F 1.39905 * 109.47217 * 293.87779 * 17 16 15 20 20 F 1.39908 * 109.47324 * 173.88097 * 17 16 15 21 21 C 1.47630 * 114.75643 * 62.27050 * 15 14 13 22 22 H 0.96998 * 120.00117 * 0.02562 * 1 2 3 23 23 H 1.09000 * 108.98421 * 77.91945 * 11 9 7 24 24 H 1.09004 * 108.91449 * 319.15659 * 11 9 7 25 25 H 1.09005 * 108.85318 * 197.68316 * 12 11 9 26 26 H 1.08992 * 108.85742 * 79.29689 * 12 11 9 27 27 H 1.08999 * 109.54701 * 333.16048 * 13 12 11 28 28 H 1.08994 * 109.62412 * 212.92838 * 13 12 11 29 29 H 1.09000 * 109.02394 * 162.00027 * 14 13 12 30 30 H 1.09001 * 109.02323 * 43.18019 * 14 13 12 31 31 H 1.08996 * 109.47295 * 317.13699 * 16 15 14 32 32 H 1.09008 * 109.46707 * 197.14141 * 16 15 14 33 33 H 1.08998 * 109.74601 * 36.84477 * 21 15 14 34 34 H 1.08999 * 109.74524 * 157.56091 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6136 -2.5417 -0.8827 11 6 0.3699 -2.5702 1.2594 12 6 -0.0680 -4.0141 1.5761 13 6 -0.4614 -4.7845 0.3414 14 6 0.7692 -5.5554 -0.1842 15 7 1.6530 -4.7165 -0.8690 16 6 2.7006 -5.4940 -1.5442 17 6 2.1286 -6.1240 -2.8157 18 9 1.5466 -5.1288 -3.6081 19 9 1.1592 -7.0720 -2.4711 20 9 3.1570 -6.7474 -3.5306 21 6 2.2397 -3.6368 -0.0508 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5175 -1.9561 1.1062 24 1 0.9315 -2.1762 2.1064 25 1 -0.9182 -3.9829 2.2575 26 1 0.7556 -4.5323 2.0672 27 1 -0.8122 -4.0922 -0.4240 28 1 -1.2555 -5.4893 0.5873 29 1 0.4334 -6.3436 -0.8581 30 1 1.2909 -6.0090 0.6585 31 1 3.0565 -6.2797 -0.8778 32 1 3.5296 -4.8363 -1.8057 33 1 2.4330 -4.0025 0.9577 34 1 3.1705 -3.2956 -0.5040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215779119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:07 Heat of formation + Delta-G solvation = -172.891516 kcal Electronic energy + Delta-G solvation = -19808.194482 eV Core-core repulsion = 16324.986021 eV Total energy + Delta-G solvation = -3483.208461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.99728 -48.56775 -48.41907 -40.30897 -36.20785 -34.56175 -32.47473 -30.39925 -27.68793 -26.08812 -25.07811 -23.51613 -21.68360 -20.19390 -19.44425 -19.35761 -18.60826 -18.00325 -16.67899 -16.48634 -16.02630 -15.65259 -15.37665 -15.28605 -15.14826 -14.91524 -14.65919 -14.61603 -14.49591 -14.13371 -13.39594 -13.34426 -13.03889 -12.83389 -12.81191 -12.47463 -12.29875 -11.95282 -11.62953 -11.39920 -11.09143 -11.03093 -10.58313 -10.30437 -9.17890 -8.03865 -6.14907 1.43781 1.44687 1.51637 1.83979 2.45313 2.69870 3.00600 3.17309 3.25139 3.59904 3.97829 4.12297 4.21494 4.30789 4.38568 4.54290 4.67675 4.71910 4.80343 4.96180 5.09462 5.12128 5.27468 5.37284 5.51350 5.66515 5.73866 5.91895 6.20469 6.24471 6.39751 6.55138 7.00020 7.51976 9.01998 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.006997 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.208245 B = 4000.531340 C = 4648.538562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.004 0.996 11 C -0.092 4.092 12 C -0.114 4.114 13 C -0.110 4.110 14 C 0.060 3.940 15 N -0.565 5.565 16 C 0.017 3.983 17 C 0.456 3.544 18 F -0.188 7.188 19 F -0.186 7.186 20 F -0.185 7.185 21 C 0.096 3.904 22 H 0.257 0.743 23 H 0.040 0.960 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.042 0.958 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -13.394 -1.044 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.022 0.978 11 C -0.131 4.131 12 C -0.151 4.151 13 C -0.148 4.148 14 C -0.069 4.069 15 N -0.289 5.289 16 C -0.112 4.112 17 C 0.401 3.599 18 F -0.170 7.170 19 F -0.168 7.168 20 F -0.167 7.167 21 C -0.029 4.029 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.060 0.940 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.920 -13.071 -1.371 13.715 hybrid contribution 0.381 0.876 0.260 0.991 sum 4.301 -12.195 -1.111 12.979 Atomic orbital electron populations 1.70077 1.07199 1.26841 1.51548 1.25716 0.95577 1.02264 0.95151 0.85759 0.78423 0.79551 0.78772 1.19777 1.21507 1.19554 1.21689 0.93014 0.92178 1.50254 0.92547 1.18396 0.93077 0.91563 0.93715 0.97764 1.21774 0.99552 0.94170 0.97583 1.21456 1.00133 0.96086 0.97462 1.21379 0.97306 0.98697 0.97376 1.21366 0.93471 0.94761 0.97293 1.58503 1.18282 1.14774 1.37346 1.23284 0.95322 1.00491 0.92097 1.20885 0.75810 0.76032 0.87173 1.93187 1.85309 1.61741 1.76761 1.93059 1.65300 1.66741 1.91682 1.93165 1.59100 1.83632 1.80757 1.21899 0.97213 0.89793 0.94012 0.93399 0.94166 0.96031 0.92869 0.92445 0.93577 0.89849 0.89359 0.94733 0.87621 0.85616 0.94001 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 11.56 21.45 0.25 -53.39 16 2 C 0.01 0.64 5.30 84.66 0.45 1.09 16 3 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -28.67 8.30 25.60 0.21 -28.46 16 8 H 0.06 2.91 7.45 -2.91 -0.02 2.89 16 9 C 0.05 2.50 1.66 -11.97 -0.02 2.48 16 10 H 0.00 0.24 7.26 -2.39 -0.02 0.22 16 11 C -0.09 -4.31 4.74 31.27 0.15 -4.16 16 12 C -0.11 -4.07 5.31 30.26 0.16 -3.91 16 13 C -0.11 -3.65 5.65 30.35 0.17 -3.48 16 14 C 0.06 1.77 4.74 88.07 0.42 2.19 16 15 N -0.56 -18.61 3.69 -913.25 -3.37 -21.98 16 16 C 0.02 0.44 5.16 86.30 0.45 0.88 16 17 C 0.46 12.15 3.27 71.98 0.24 12.38 16 18 F -0.19 -6.23 17.13 44.97 0.77 -5.46 16 19 F -0.19 -4.94 14.64 44.97 0.66 -4.28 16 20 F -0.18 -4.54 17.32 44.97 0.78 -3.77 16 21 C 0.10 3.64 4.87 85.45 0.42 4.05 16 22 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 23 H 0.04 2.14 6.72 -2.39 -0.02 2.13 16 24 H 0.02 1.02 7.96 -2.38 -0.02 1.00 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 27 H 0.05 1.86 7.11 -2.39 -0.02 1.84 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.42 5.18 -2.39 -0.01 2.41 16 30 H 0.03 0.91 7.54 -2.39 -0.02 0.90 16 31 H 0.11 2.02 7.96 -2.39 -0.02 2.00 16 32 H 0.13 2.90 7.39 -2.38 -0.02 2.89 16 33 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 34 H 0.07 2.58 6.73 -2.39 -0.02 2.57 16 Total: -1.00 -60.48 273.31 4.85 -55.62 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.11 Total: 4.59 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 2.64 Total: -16.95 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.12 Total: -75.37 kcal Atomic # 9 Polarization: -15.71 SS G_CDS: 2.21 Total: -13.50 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.48 4.85 -55.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215779119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.267 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds