Wall clock time and date at job start Mon Mar 30 2020 07:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46849 * 2 1 4 4 C 1.52999 * 109.47244 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.47297 * 185.45406 * 4 2 1 6 6 F 1.39899 * 109.47131 * 58.05504 * 5 4 2 7 7 F 1.39909 * 109.46868 * 298.05677 * 5 4 2 8 8 F 1.39899 * 109.47603 * 178.05975 * 5 4 2 9 9 N 1.46897 * 109.47144 * 240.00067 * 2 1 3 10 10 C 1.46907 * 110.99984 * 85.96042 * 9 2 1 11 11 C 1.52999 * 109.46810 * 180.26892 * 10 9 2 12 12 C 1.50694 * 115.55163 * 39.80194 * 11 10 9 13 13 H 1.07999 * 119.99816 * 267.79220 * 12 11 10 14 14 C 1.37874 * 120.00469 * 87.79344 * 12 11 10 15 15 N 1.31518 * 120.00328 * 179.33213 * 14 12 11 16 16 Si 1.86801 * 119.99964 * 359.32859 * 14 12 11 17 17 H 1.48496 * 109.46785 * 90.62271 * 16 14 12 18 18 H 1.48500 * 109.47276 * 210.62504 * 16 14 12 19 19 H 1.48501 * 109.46937 * 330.62445 * 16 14 12 20 20 C 1.52995 * 117.49860 * 254.08747 * 11 10 9 21 21 C 1.52997 * 60.00123 * 252.51512 * 20 11 10 22 22 H 1.08998 * 109.47757 * 64.31061 * 1 2 3 23 23 H 1.09004 * 109.46810 * 184.30930 * 1 2 3 24 24 H 1.09002 * 109.47052 * 304.30390 * 1 2 3 25 25 H 1.09001 * 109.47284 * 65.45541 * 4 2 1 26 26 H 1.09000 * 109.47483 * 305.45362 * 4 2 1 27 27 H 1.00901 * 110.99952 * 322.00355 * 9 2 1 28 28 H 1.08998 * 109.46639 * 300.26890 * 10 9 2 29 29 H 1.09002 * 109.46986 * 60.27035 * 10 9 2 30 30 H 0.96992 * 119.99986 * 179.97438 * 15 14 12 31 31 H 1.09001 * 117.50202 * 359.97438 * 20 11 10 32 32 H 1.09006 * 117.50033 * 145.02565 * 20 11 10 33 33 H 1.09005 * 117.49891 * 252.51034 * 21 20 11 34 34 H 1.08998 * 117.52139 * 107.48063 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5638 -0.6036 1.3197 6 9 3.9270 0.7473 1.3359 7 9 4.1317 -1.2258 0.2026 8 9 4.0262 -1.2248 2.4847 9 7 2.0196 -0.6925 -1.1994 10 6 2.1040 0.2281 -2.3412 11 6 2.6102 -0.5293 -3.5705 12 6 2.0639 -1.9227 -3.7459 13 1 2.5975 -2.7675 -3.3361 14 6 0.8829 -2.1192 -4.4297 15 7 0.4129 -3.3365 -4.5941 16 14 -0.0498 -0.6565 -5.1224 17 1 0.4056 -0.3915 -6.5108 18 1 -1.5047 -0.9541 -5.1269 19 1 0.2083 0.5391 -4.2801 20 6 4.0525 -0.2745 -4.0128 21 6 2.8900 0.2843 -4.8356 22 1 -0.3634 0.4455 -0.9260 23 1 -0.3633 -1.0248 0.0772 24 1 -0.3633 0.5792 0.8489 25 1 1.7587 -1.7732 1.2018 26 1 1.5992 -0.2669 2.1366 27 1 1.4403 -1.4889 -1.4190 28 1 1.1167 0.6401 -2.5493 29 1 2.7935 1.0385 -2.1043 30 1 -0.4181 -3.4746 -5.0748 31 1 4.6407 0.4329 -3.4283 32 1 4.6067 -1.1150 -4.4307 33 1 2.6794 -0.1885 -5.7949 34 1 2.7131 1.3590 -4.7923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235157441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:18 Heat of formation + Delta-G solvation = -136.755201 kcal Electronic energy + Delta-G solvation = -19672.383602 eV Core-core repulsion = 16190.742129 eV Total energy + Delta-G solvation = -3481.641473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.63664 -47.26019 -46.92928 -37.73961 -36.02017 -32.08083 -31.25082 -28.56911 -25.81827 -24.47481 -23.15868 -21.53901 -20.63920 -18.94518 -18.04633 -17.88108 -17.10240 -16.19709 -15.03424 -14.82377 -14.59632 -14.15136 -13.94355 -13.68617 -13.59049 -13.30473 -13.20382 -13.11204 -12.71671 -12.58766 -12.37739 -12.20243 -11.79340 -11.56450 -11.12916 -11.03495 -10.80055 -10.64771 -10.37167 -10.02006 -9.48934 -8.98081 -8.61885 -8.42927 -7.58749 -6.10599 -4.11915 3.18847 3.26491 3.36386 3.40240 4.19024 4.29760 4.40999 4.46090 4.73236 5.08122 5.17922 5.21869 5.29490 5.46295 5.54335 5.68972 5.85355 5.91593 6.02080 6.16396 6.22198 6.32456 6.41373 6.55797 6.58322 6.82295 7.05807 7.21041 7.76049 7.82089 8.22050 8.57614 8.97802 9.53127 11.00821 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.007411 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.598895 B = 3777.326910 C = 4034.998554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.075 3.925 3 H 0.081 0.919 4 C -0.153 4.153 5 C 0.455 3.545 6 F -0.194 7.194 7 F -0.155 7.155 8 F -0.200 7.200 9 N -0.667 5.667 10 C 0.098 3.902 11 C 0.008 3.992 12 C -0.476 4.476 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.898 5.898 16 Si 0.876 3.124 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.259 1.259 20 C -0.173 4.173 21 C -0.209 4.209 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.363 0.637 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 7.477 11.048 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 H 0.099 0.901 4 C -0.192 4.192 5 C 0.401 3.599 6 F -0.176 7.176 7 F -0.136 7.136 8 F -0.182 7.182 9 N -0.301 5.301 10 C -0.031 4.031 11 C 0.007 3.993 12 C -0.513 4.513 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.536 5.536 16 Si 0.705 3.295 17 H -0.206 1.206 18 H -0.225 1.225 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.247 4.247 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.186 0.814 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.837 7.416 11.127 13.498 hybrid contribution -1.307 0.882 -0.740 1.742 sum 0.530 8.298 10.387 13.306 Atomic orbital electron populations 1.22452 0.96424 1.02675 1.02221 1.21502 0.93348 0.97933 0.90817 0.90126 1.22906 0.88744 1.06084 1.01479 1.20467 0.92688 0.73248 0.73504 1.93122 1.93595 1.34568 1.96298 1.93319 1.86736 1.81983 1.51551 1.93136 1.91191 1.83111 1.50728 1.60559 1.56601 1.10209 1.02706 1.21593 0.97720 0.93268 0.90492 1.19360 0.94643 0.95615 0.89715 1.20273 1.06706 0.89691 1.34665 0.90074 1.24999 0.97071 0.95249 0.95410 1.69900 1.21403 1.20376 1.41931 0.86931 0.78173 0.84193 0.80245 1.20609 1.22468 1.18322 1.22779 0.92116 1.01956 1.04154 1.22979 1.06359 0.97677 0.97688 0.91937 0.91822 0.92551 0.87313 0.88187 0.81350 0.95916 0.93453 0.92707 0.91112 0.89829 0.89672 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.18 37.16 0.34 -1.98 16 2 C 0.08 1.08 2.52 -67.72 -0.17 0.91 16 3 H 0.08 1.15 7.24 -51.93 -0.38 0.77 16 4 C -0.15 -1.88 5.01 -26.73 -0.13 -2.01 16 5 C 0.45 6.59 3.16 37.16 0.12 6.71 16 6 F -0.19 -2.88 16.63 2.25 0.04 -2.84 16 7 F -0.15 -2.74 15.73 2.25 0.04 -2.71 16 8 F -0.20 -2.82 17.32 2.25 0.04 -2.79 16 9 N -0.67 -12.28 4.54 -106.72 -0.48 -12.76 16 10 C 0.10 1.97 5.44 -3.82 -0.02 1.95 16 11 C 0.01 0.18 1.21 -155.67 -0.19 -0.01 16 12 C -0.48 -12.60 7.95 -34.44 -0.27 -12.87 16 13 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.30 13.96 55.43 0.77 -25.53 16 16 Si 0.88 21.06 25.02 -169.99 -4.25 16.81 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.26 -5.88 5.40 56.52 0.31 -5.57 16 20 C -0.17 -3.62 9.88 -26.74 -0.26 -3.89 16 21 C -0.21 -4.48 7.56 -26.73 -0.20 -4.68 16 22 H 0.06 0.90 7.43 -51.93 -0.39 0.52 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.36 7.39 7.20 -39.29 -0.28 7.11 16 28 H 0.02 0.47 5.73 -51.93 -0.30 0.17 16 29 H 0.05 0.89 7.86 -51.93 -0.41 0.49 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 32 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.08 1.92 7.14 -51.93 -0.37 1.55 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -28.33 286.10 -5.17 -33.50 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.73 Total: 5.95 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.89 Total: -13.94 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.29 Total: -38.29 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.11 Total: -8.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.25 Total: 16.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.33 -5.17 -33.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235157441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.253 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds