Wall clock time and date at job start Mon Mar 30 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46849 * 2 1 4 4 C 1.52999 * 109.47244 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.47297 * 185.45406 * 4 2 1 6 6 F 1.39899 * 109.47131 * 58.05504 * 5 4 2 7 7 F 1.39909 * 109.46868 * 298.05677 * 5 4 2 8 8 F 1.39899 * 109.47603 * 178.05975 * 5 4 2 9 9 N 1.46897 * 109.47144 * 240.00067 * 2 1 3 10 10 C 1.46907 * 110.99984 * 85.96042 * 9 2 1 11 11 C 1.52999 * 109.46810 * 180.26892 * 10 9 2 12 12 C 1.50694 * 115.55163 * 39.80194 * 11 10 9 13 13 H 1.07999 * 119.99816 * 267.79220 * 12 11 10 14 14 C 1.37874 * 120.00469 * 87.79344 * 12 11 10 15 15 N 1.31518 * 120.00328 * 179.33213 * 14 12 11 16 16 Si 1.86801 * 119.99964 * 359.32859 * 14 12 11 17 17 H 1.48496 * 109.46785 * 90.62271 * 16 14 12 18 18 H 1.48500 * 109.47276 * 210.62504 * 16 14 12 19 19 H 1.48501 * 109.46937 * 330.62445 * 16 14 12 20 20 C 1.52995 * 117.49860 * 254.08747 * 11 10 9 21 21 C 1.52997 * 60.00123 * 252.51512 * 20 11 10 22 22 H 1.08998 * 109.47757 * 64.31061 * 1 2 3 23 23 H 1.09004 * 109.46810 * 184.30930 * 1 2 3 24 24 H 1.09002 * 109.47052 * 304.30390 * 1 2 3 25 25 H 1.09001 * 109.47284 * 65.45541 * 4 2 1 26 26 H 1.09000 * 109.47483 * 305.45362 * 4 2 1 27 27 H 1.00901 * 110.99952 * 322.00355 * 9 2 1 28 28 H 1.08998 * 109.46639 * 300.26890 * 10 9 2 29 29 H 1.09002 * 109.46986 * 60.27035 * 10 9 2 30 30 H 0.96992 * 119.99986 * 179.97438 * 15 14 12 31 31 H 1.09001 * 117.50202 * 359.97438 * 20 11 10 32 32 H 1.09006 * 117.50033 * 145.02565 * 20 11 10 33 33 H 1.09005 * 117.49891 * 252.51034 * 21 20 11 34 34 H 1.08998 * 117.52139 * 107.48063 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5638 -0.6036 1.3197 6 9 3.9270 0.7473 1.3359 7 9 4.1317 -1.2258 0.2026 8 9 4.0262 -1.2248 2.4847 9 7 2.0196 -0.6925 -1.1994 10 6 2.1040 0.2281 -2.3412 11 6 2.6102 -0.5293 -3.5705 12 6 2.0639 -1.9227 -3.7459 13 1 2.5975 -2.7675 -3.3361 14 6 0.8829 -2.1192 -4.4297 15 7 0.4129 -3.3365 -4.5941 16 14 -0.0498 -0.6565 -5.1224 17 1 0.4056 -0.3915 -6.5108 18 1 -1.5047 -0.9541 -5.1269 19 1 0.2083 0.5391 -4.2801 20 6 4.0525 -0.2745 -4.0128 21 6 2.8900 0.2843 -4.8356 22 1 -0.3634 0.4455 -0.9260 23 1 -0.3633 -1.0248 0.0772 24 1 -0.3633 0.5792 0.8489 25 1 1.7587 -1.7732 1.2018 26 1 1.5992 -0.2669 2.1366 27 1 1.4403 -1.4889 -1.4190 28 1 1.1167 0.6401 -2.5493 29 1 2.7935 1.0385 -2.1043 30 1 -0.4181 -3.4746 -5.0748 31 1 4.6407 0.4329 -3.4283 32 1 4.6067 -1.1150 -4.4307 33 1 2.6794 -0.1885 -5.7949 34 1 2.7131 1.3590 -4.7923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235157441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:17 Heat of formation + Delta-G solvation = -154.141142 kcal Electronic energy + Delta-G solvation = -19673.137513 eV Core-core repulsion = 16190.742129 eV Total energy + Delta-G solvation = -3482.395384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.80314 -48.39482 -48.17632 -39.27925 -37.43130 -34.17597 -32.54693 -29.67080 -27.77814 -26.00776 -24.33091 -23.24076 -21.81018 -20.76790 -19.22044 -19.04477 -18.38104 -17.98904 -16.80902 -16.25324 -16.01003 -15.41892 -15.27379 -15.06549 -14.76244 -14.72619 -14.61722 -14.41882 -14.37811 -13.93646 -13.78508 -13.30562 -13.15834 -13.09119 -12.72802 -12.52755 -12.17157 -12.06855 -11.91740 -11.81996 -11.33542 -10.88383 -10.58814 -10.21518 -9.00983 -8.22672 -6.26944 1.35848 1.39924 1.50691 2.08330 2.39941 3.04206 3.12159 3.14559 3.27503 3.40478 3.63770 4.07254 4.16627 4.26591 4.36422 4.44567 4.52666 4.61217 4.70506 4.78197 4.83989 4.88939 4.94099 5.07318 5.15288 5.27593 5.37995 5.52102 5.80122 6.33567 6.49037 6.68663 6.84076 7.40667 8.92428 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.007411 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.598895 B = 3777.326910 C = 4034.998554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H 0.087 0.913 4 C -0.145 4.145 5 C 0.452 3.548 6 F -0.195 7.195 7 F -0.179 7.179 8 F -0.198 7.198 9 N -0.680 5.680 10 C 0.107 3.893 11 C -0.016 4.016 12 C -0.464 4.464 13 H 0.034 0.966 14 C 0.024 3.976 15 N -0.947 5.947 16 Si 0.933 3.067 17 H -0.280 1.280 18 H -0.302 1.302 19 H -0.232 1.232 20 C -0.165 4.165 21 C -0.202 4.202 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.348 0.652 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 10.002 12.170 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.037 4.037 3 H 0.105 0.895 4 C -0.184 4.184 5 C 0.398 3.602 6 F -0.177 7.177 7 F -0.160 7.160 8 F -0.180 7.180 9 N -0.312 5.312 10 C -0.022 4.022 11 C -0.017 4.017 12 C -0.502 4.502 13 H 0.052 0.948 14 C -0.173 4.173 15 N -0.588 5.588 16 Si 0.759 3.241 17 H -0.206 1.206 18 H -0.229 1.229 19 H -0.155 1.155 20 C -0.202 4.202 21 C -0.240 4.240 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.129 0.871 26 H 0.156 0.844 27 H 0.169 0.831 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.491 9.970 12.272 15.882 hybrid contribution -1.082 0.029 -1.023 1.489 sum 0.409 9.999 11.249 15.056 Atomic orbital electron populations 1.22380 0.95135 1.02903 1.02777 1.21617 0.94398 0.97999 0.89666 0.89474 1.22941 0.86935 1.06468 1.02019 1.20813 0.93711 0.72922 0.72788 1.93116 1.93740 1.34578 1.96259 1.93273 1.87309 1.82492 1.52968 1.93138 1.91321 1.83097 1.50446 1.60538 1.57102 1.10008 1.03560 1.21460 0.97697 0.93333 0.89710 1.19399 0.96144 0.94220 0.91915 1.20276 1.06030 0.90622 1.33246 0.94815 1.25699 0.98075 0.97550 0.95982 1.70044 1.22180 1.22756 1.43788 0.86009 0.76388 0.81946 0.79730 1.20585 1.22934 1.15516 1.22791 0.91584 1.01962 1.03866 1.23003 1.05827 0.98968 0.96158 0.93527 0.92230 0.89362 0.87145 0.84383 0.83098 0.96176 0.91802 0.92849 0.88566 0.91192 0.91220 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 9.18 71.98 0.66 -3.35 16 2 C 0.07 1.92 2.52 44.91 0.11 2.03 16 3 H 0.09 2.18 7.24 -2.38 -0.02 2.16 16 4 C -0.15 -3.17 5.01 30.59 0.15 -3.01 16 5 C 0.45 12.23 3.16 71.98 0.23 12.46 16 6 F -0.20 -5.33 16.63 44.97 0.75 -4.58 16 7 F -0.18 -6.23 15.73 44.97 0.71 -5.52 16 8 F -0.20 -5.25 17.32 44.97 0.78 -4.47 16 9 N -0.68 -24.27 4.54 -491.56 -2.23 -26.50 16 10 C 0.11 4.06 5.44 86.30 0.47 4.53 16 11 C -0.02 -0.69 1.21 -52.93 -0.06 -0.76 16 12 C -0.46 -25.10 7.95 25.60 0.20 -24.90 16 13 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 14 C 0.02 1.34 5.47 84.65 0.46 1.80 16 15 N -0.95 -57.25 13.96 21.45 0.30 -56.95 16 16 Si 0.93 43.09 25.02 68.60 1.72 44.81 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.23 -9.64 5.40 99.48 0.54 -9.10 16 20 C -0.16 -6.64 9.88 30.59 0.30 -6.34 16 21 C -0.20 -8.15 7.56 30.59 0.23 -7.92 16 22 H 0.05 1.23 7.43 -2.39 -0.02 1.21 16 23 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.35 14.24 7.20 -89.69 -0.65 13.59 16 28 H 0.02 0.77 5.73 -2.39 -0.01 0.76 16 29 H 0.06 2.20 7.86 -2.39 -0.02 2.18 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.10 3.39 8.08 -2.39 -0.02 3.37 16 32 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 33 H 0.07 3.03 7.14 -2.38 -0.02 3.01 16 34 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -62.17 286.10 5.07 -57.11 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.29 Total: 21.58 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 2.76 Total: -25.46 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.93 Total: -83.45 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 2.23 Total: -14.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.72 Total: 44.81 kcal Total: -62.17 5.07 -57.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235157441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.035 kcal (2) G-P(sol) polarization free energy of solvation -62.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds