Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39800 * 126.08010 * 2 1 4 4 C 1.50695 * 126.51444 * 0.03083 * 3 2 1 5 5 C 1.37998 * 106.96967 * 180.15520 * 3 2 1 6 6 C 1.46492 * 126.26272 * 179.84769 * 5 3 2 7 7 O 1.21615 * 120.00021 * 359.68679 * 6 5 3 8 8 O 1.34890 * 120.00009 * 179.68826 * 6 5 3 9 9 N 1.37701 * 107.47169 * 359.58229 * 5 3 2 10 10 C 1.46496 * 125.63321 * 180.23036 * 9 5 3 11 11 C 1.34955 * 108.72884 * 0.26281 * 9 5 3 12 12 C 1.50705 * 125.50458 * 179.97438 * 11 9 5 13 13 C 1.53002 * 109.47175 * 90.02734 * 12 11 9 14 14 C 1.50700 * 109.47178 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00239 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99778 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99921 * 18 16 14 20 20 H 1.48508 * 109.46959 * 209.99907 * 18 16 14 21 21 H 1.48501 * 109.47277 * 329.99355 * 18 16 14 22 22 H 1.08994 * 109.47738 * 270.30834 * 1 2 3 23 23 H 1.08999 * 109.46893 * 30.31213 * 1 2 3 24 24 H 1.09004 * 109.46797 * 150.30851 * 1 2 3 25 25 H 1.09001 * 109.47709 * 270.16588 * 4 3 2 26 26 H 1.09002 * 109.47412 * 30.17454 * 4 3 2 27 27 H 1.09004 * 109.47339 * 150.16760 * 4 3 2 28 28 H 0.96700 * 117.00163 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47475 * 90.02571 * 10 9 5 30 30 H 1.09001 * 109.46941 * 210.02232 * 10 9 5 31 31 H 1.08996 * 109.47099 * 330.02482 * 10 9 5 32 32 H 1.09002 * 109.47137 * 210.02704 * 12 11 9 33 33 H 1.08995 * 109.47091 * 330.02363 * 12 11 9 34 34 H 1.09002 * 109.47064 * 300.00016 * 13 12 11 35 35 H 1.08999 * 109.46711 * 59.99953 * 13 12 11 36 36 H 0.96999 * 120.00428 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3302 1.1299 0.0000 4 6 1.8795 2.5678 0.0007 5 6 3.6342 0.6781 -0.0036 6 6 4.8396 1.5105 -0.0080 7 8 4.7415 2.7227 -0.0146 8 8 6.0584 0.9325 -0.0049 9 7 3.5948 -0.6984 0.0039 10 6 4.7606 -1.5855 0.0080 11 6 2.3049 -1.0950 0.0060 12 6 1.8288 -2.5249 0.0132 13 6 1.6673 -3.0013 1.4582 14 6 1.1907 -4.4310 1.4654 15 1 1.0205 -4.9481 0.5326 16 6 0.9729 -5.0790 2.6626 17 7 0.5575 -6.3268 2.6689 18 14 1.2680 -4.1847 4.2759 19 1 0.0179 -3.5054 4.7012 20 1 1.6787 -5.1621 5.3158 21 1 2.3422 -3.1757 4.0932 22 1 -0.3634 0.0055 1.0276 23 1 -0.3633 0.8872 -0.5187 24 1 -0.3633 -0.8928 -0.5091 25 1 1.7675 2.9140 -1.0268 26 1 0.9233 2.6486 0.5176 27 1 2.6217 3.1811 0.5118 28 1 6.8243 1.5228 -0.0076 29 1 5.0501 -1.8004 1.0367 30 1 4.5106 -2.5164 -0.5010 31 1 5.5885 -1.0999 -0.5085 32 1 0.8698 -2.5911 -0.5006 33 1 2.5586 -3.1533 -0.4972 34 1 2.6263 -2.9351 1.9720 35 1 0.9375 -2.3728 1.9685 36 1 0.4039 -6.7826 3.5113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = -67.736351 kcal Electronic energy + Delta-G solvation = -18591.053383 eV Core-core repulsion = 15654.261533 eV Total energy + Delta-G solvation = -2936.791851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50750 -39.57849 -36.17864 -34.19332 -33.99012 -32.11979 -30.01546 -28.93245 -27.39907 -25.69526 -24.16074 -22.40390 -20.81127 -19.09746 -19.03700 -17.66699 -16.89703 -16.65113 -15.96648 -15.01871 -14.81233 -14.21904 -13.97964 -13.42052 -13.34461 -13.06507 -12.75385 -12.54934 -12.50964 -12.24705 -12.10778 -11.84269 -11.67063 -11.57216 -11.37176 -11.09453 -11.01455 -10.46695 -10.27131 -9.97906 -9.82741 -9.28801 -8.60596 -8.14975 -7.71078 -6.11479 -4.10705 1.36077 2.85043 2.89799 3.16945 3.23822 3.26960 3.34737 3.38714 4.39440 4.92640 5.02863 5.21896 5.23239 5.34895 5.42378 5.51638 5.70499 5.73290 5.85515 5.89037 5.92453 6.07102 6.19821 6.30121 6.31870 6.39016 6.47722 6.60702 6.61746 7.03474 7.16361 7.23628 7.36506 7.46482 7.70075 7.92977 8.43729 8.92139 9.50707 11.01546 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.006059 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.006627 B = 4619.893246 C = 5017.858856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.192 4.192 3 C -0.056 4.056 4 C -0.088 4.088 5 C -0.079 4.079 6 C 0.557 3.443 7 O -0.518 6.518 8 O -0.521 6.521 9 N -0.415 5.415 10 C 0.067 3.933 11 C 0.099 3.901 12 C -0.048 4.048 13 C -0.004 4.004 14 C -0.523 4.523 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.267 1.267 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.409 0.591 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.013 0.987 35 H 0.018 0.982 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 13.781 -5.912 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.197 4.197 3 C -0.064 4.064 4 C -0.145 4.145 5 C -0.186 4.186 6 C 0.405 3.595 7 O -0.408 6.408 8 O -0.333 6.333 9 N -0.089 5.089 10 C -0.074 4.074 11 C -0.020 4.020 12 C -0.086 4.086 13 C -0.041 4.041 14 C -0.561 4.561 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.267 0.733 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.198 13.503 -5.794 16.361 hybrid contribution 0.827 0.587 1.012 1.433 sum 8.025 14.090 -4.782 16.905 Atomic orbital electron populations 1.20097 0.89489 1.01802 1.01759 1.19135 0.95992 0.90700 1.13877 1.19773 0.89606 0.95857 1.01211 1.20323 1.01352 0.90839 1.01950 1.18849 0.91725 0.82079 1.25963 1.19510 0.81878 0.85813 0.72334 1.90882 1.86969 1.14565 1.48355 1.84665 1.16830 1.45257 1.86592 1.43695 1.06571 1.04845 1.53769 1.22235 0.86663 0.94349 1.04125 1.20993 0.82041 0.97834 1.01166 1.20393 1.01095 0.85943 1.01196 1.19516 0.96766 0.97083 0.90767 1.21067 1.45159 0.95296 0.94578 0.90798 1.24977 0.94418 0.94670 0.99076 1.69901 1.46289 1.10891 1.26842 0.86824 0.79293 0.79768 0.83693 1.20092 1.21339 1.19163 0.92000 0.92425 0.91559 0.91612 0.91688 0.90671 0.73295 0.90479 0.89200 0.88789 0.89657 0.91574 0.96875 0.96338 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.87 36.00 0.36 -0.72 16 2 C -0.19 -3.22 6.11 -105.02 -0.64 -3.86 16 3 C -0.06 -0.90 6.22 -104.13 -0.65 -1.55 16 4 C -0.09 -1.19 9.54 36.00 0.34 -0.85 16 5 C -0.08 -1.28 6.89 -81.99 -0.56 -1.85 16 6 C 0.56 8.12 8.29 34.06 0.28 8.41 16 7 O -0.52 -8.33 15.61 -19.35 -0.30 -8.64 16 8 O -0.52 -5.60 10.86 -41.01 -0.45 -6.04 16 9 N -0.41 -6.74 3.15 -115.78 -0.36 -7.10 16 10 C 0.07 0.89 10.34 59.84 0.62 1.51 16 11 C 0.10 1.74 6.10 -82.20 -0.50 1.24 16 12 C -0.05 -0.91 5.12 -27.88 -0.14 -1.05 16 13 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 14 C -0.52 -14.26 9.66 -34.44 -0.33 -14.59 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 18 Si 0.88 21.46 27.47 -169.99 -4.67 16.80 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 24 H 0.07 0.94 7.09 -51.93 -0.37 0.58 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 27 H 0.07 1.07 6.50 -51.93 -0.34 0.74 16 28 H 0.41 2.38 9.11 45.56 0.42 2.79 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.11 6.94 -51.93 -0.36 0.75 16 31 H 0.09 1.06 6.15 -51.93 -0.32 0.74 16 32 H 0.09 1.56 7.09 -51.93 -0.37 1.19 16 33 H 0.07 1.18 6.97 -51.93 -0.36 0.82 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 35 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -32.59 300.80 -6.07 -38.66 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.15 Total: -0.28 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.44 Total: -11.61 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.41 Total: -33.41 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.75 Total: -14.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.59 -6.07 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.081 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds