Wall clock time and date at job start Mon Mar 30 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39800 * 126.08010 * 2 1 4 4 C 1.50695 * 126.51444 * 0.03083 * 3 2 1 5 5 C 1.37998 * 106.96967 * 180.15520 * 3 2 1 6 6 C 1.46492 * 126.26272 * 179.84769 * 5 3 2 7 7 O 1.21615 * 120.00021 * 359.68679 * 6 5 3 8 8 O 1.34890 * 120.00009 * 179.68826 * 6 5 3 9 9 N 1.37701 * 107.47169 * 359.58229 * 5 3 2 10 10 C 1.46496 * 125.63321 * 180.23036 * 9 5 3 11 11 C 1.34955 * 108.72884 * 0.26281 * 9 5 3 12 12 C 1.50705 * 125.50458 * 179.97438 * 11 9 5 13 13 C 1.53002 * 109.47175 * 90.02734 * 12 11 9 14 14 C 1.50700 * 109.47178 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00239 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99778 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99921 * 18 16 14 20 20 H 1.48508 * 109.46959 * 209.99907 * 18 16 14 21 21 H 1.48501 * 109.47277 * 329.99355 * 18 16 14 22 22 H 1.08994 * 109.47738 * 270.30834 * 1 2 3 23 23 H 1.08999 * 109.46893 * 30.31213 * 1 2 3 24 24 H 1.09004 * 109.46797 * 150.30851 * 1 2 3 25 25 H 1.09001 * 109.47709 * 270.16588 * 4 3 2 26 26 H 1.09002 * 109.47412 * 30.17454 * 4 3 2 27 27 H 1.09004 * 109.47339 * 150.16760 * 4 3 2 28 28 H 0.96700 * 117.00163 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47475 * 90.02571 * 10 9 5 30 30 H 1.09001 * 109.46941 * 210.02232 * 10 9 5 31 31 H 1.08996 * 109.47099 * 330.02482 * 10 9 5 32 32 H 1.09002 * 109.47137 * 210.02704 * 12 11 9 33 33 H 1.08995 * 109.47091 * 330.02363 * 12 11 9 34 34 H 1.09002 * 109.47064 * 300.00016 * 13 12 11 35 35 H 1.08999 * 109.46711 * 59.99953 * 13 12 11 36 36 H 0.96999 * 120.00428 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3302 1.1299 0.0000 4 6 1.8795 2.5678 0.0007 5 6 3.6342 0.6781 -0.0036 6 6 4.8396 1.5105 -0.0080 7 8 4.7415 2.7227 -0.0146 8 8 6.0584 0.9325 -0.0049 9 7 3.5948 -0.6984 0.0039 10 6 4.7606 -1.5855 0.0080 11 6 2.3049 -1.0950 0.0060 12 6 1.8288 -2.5249 0.0132 13 6 1.6673 -3.0013 1.4582 14 6 1.1907 -4.4310 1.4654 15 1 1.0205 -4.9481 0.5326 16 6 0.9729 -5.0790 2.6626 17 7 0.5575 -6.3268 2.6689 18 14 1.2680 -4.1847 4.2759 19 1 0.0179 -3.5054 4.7012 20 1 1.6787 -5.1621 5.3158 21 1 2.3422 -3.1757 4.0932 22 1 -0.3634 0.0055 1.0276 23 1 -0.3633 0.8872 -0.5187 24 1 -0.3633 -0.8928 -0.5091 25 1 1.7675 2.9140 -1.0268 26 1 0.9233 2.6486 0.5176 27 1 2.6217 3.1811 0.5118 28 1 6.8243 1.5228 -0.0076 29 1 5.0501 -1.8004 1.0367 30 1 4.5106 -2.5164 -0.5010 31 1 5.5885 -1.0999 -0.5085 32 1 0.8698 -2.5911 -0.5006 33 1 2.5586 -3.1533 -0.4972 34 1 2.6263 -2.9351 1.9720 35 1 0.9375 -2.3728 1.9685 36 1 0.4039 -6.7826 3.5113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:25 Heat of formation + Delta-G solvation = -87.923242 kcal Electronic energy + Delta-G solvation = -18591.928753 eV Core-core repulsion = 15654.261533 eV Total energy + Delta-G solvation = -2937.667220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.70606 -40.66179 -37.19882 -35.97726 -35.14058 -33.98107 -31.47998 -30.01548 -28.71718 -27.29600 -25.27115 -23.86357 -22.39123 -20.35023 -20.22969 -18.95703 -18.69070 -17.82869 -17.11553 -16.41369 -16.23406 -15.81114 -15.24510 -14.85056 -14.62322 -14.45979 -14.41269 -13.67986 -13.66600 -13.59613 -13.36036 -13.17013 -12.86275 -12.81888 -12.69339 -12.54201 -12.36877 -12.01844 -11.77282 -11.71537 -11.54030 -11.34113 -10.76872 -9.32767 -9.00173 -8.29613 -6.33067 0.18273 1.34356 1.36069 1.46514 1.59400 1.77117 2.07172 2.15513 2.34305 3.06213 3.77320 3.89773 3.99624 4.22577 4.34388 4.46233 4.47647 4.55952 4.63600 4.72550 4.76971 4.87779 4.94074 5.01404 5.13964 5.18465 5.27732 5.34319 5.38556 5.48129 5.55291 5.61908 5.93065 6.11309 6.23880 6.26547 6.74741 6.97242 7.31812 8.86627 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.006059 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.006627 B = 4619.893246 C = 5017.858856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.197 4.197 3 C -0.072 4.072 4 C -0.082 4.082 5 C -0.088 4.088 6 C 0.564 3.436 7 O -0.535 6.535 8 O -0.509 6.509 9 N -0.416 5.416 10 C 0.062 3.938 11 C 0.074 3.926 12 C -0.036 4.036 13 C 0.004 3.996 14 C -0.526 4.526 15 H 0.043 0.957 16 C 0.013 3.987 17 N -0.947 5.947 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.255 1.255 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.432 0.568 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.011 0.989 35 H 0.017 0.983 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 15.654 -5.632 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.202 4.202 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.196 4.196 6 C 0.411 3.589 7 O -0.427 6.427 8 O -0.324 6.324 9 N -0.090 5.090 10 C -0.078 4.078 11 C -0.045 4.045 12 C -0.073 4.073 13 C -0.034 4.034 14 C -0.564 4.564 15 H 0.061 0.939 16 C -0.185 4.185 17 N -0.587 5.587 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.179 1.179 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.295 0.705 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.214 15.381 -5.526 18.291 hybrid contribution 0.594 -0.010 0.839 1.028 sum 8.808 15.371 -4.687 18.325 Atomic orbital electron populations 1.20152 0.88357 1.02801 1.01894 1.19460 0.97001 0.90716 1.13045 1.20140 0.89742 0.96862 1.01352 1.20326 1.01694 0.89176 1.02713 1.19254 0.92801 0.82292 1.25273 1.19263 0.82503 0.85199 0.71902 1.90881 1.87448 1.15191 1.49166 1.84592 1.16563 1.45552 1.85708 1.43865 1.06738 1.05211 1.53155 1.22430 0.86442 0.94456 1.04501 1.20757 0.83066 0.97059 1.03646 1.20097 1.01537 0.87223 0.98489 1.19373 0.96096 0.94280 0.93617 1.21389 1.44325 0.97304 0.93360 0.93918 1.25837 0.94398 0.95348 1.02893 1.70037 1.48108 1.12680 1.27901 0.85807 0.79706 0.78779 0.79236 1.19260 1.20933 1.17924 0.92217 0.90201 0.91840 0.90548 0.90285 0.91460 0.70506 0.90459 0.88802 0.86787 0.89592 0.91136 0.97016 0.96483 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 9.87 71.23 0.70 -1.35 16 2 C -0.20 -6.30 6.11 -20.12 -0.12 -6.43 16 3 C -0.07 -2.22 6.22 -19.54 -0.12 -2.34 16 4 C -0.08 -2.07 9.54 71.23 0.68 -1.39 16 5 C -0.09 -2.70 6.89 40.32 0.28 -2.42 16 6 C 0.56 15.11 8.29 69.97 0.58 15.69 16 7 O -0.54 -16.11 15.61 19.46 0.30 -15.81 16 8 O -0.51 -9.37 10.86 -58.04 -0.63 -10.00 16 9 N -0.42 -12.80 3.15 -520.21 -1.64 -14.44 16 10 C 0.06 1.51 10.34 127.77 1.32 2.83 16 11 C 0.07 2.52 6.10 41.44 0.25 2.77 16 12 C -0.04 -1.32 5.12 29.85 0.15 -1.16 16 13 C 0.00 0.19 4.02 29.85 0.12 0.31 16 14 C -0.53 -29.00 9.66 25.60 0.25 -28.75 16 15 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 16 C 0.01 0.72 5.47 84.65 0.46 1.18 16 17 N -0.95 -57.92 13.96 21.44 0.30 -57.62 16 18 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.26 -11.33 6.54 99.48 0.65 -10.68 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.79 8.01 -2.39 -0.02 1.77 16 24 H 0.06 1.75 7.09 -2.39 -0.02 1.73 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 27 H 0.07 1.80 6.50 -2.38 -0.02 1.79 16 28 H 0.43 3.52 9.11 -74.06 -0.67 2.85 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 2.20 6.94 -2.39 -0.02 2.18 16 31 H 0.11 2.27 6.15 -2.39 -0.01 2.26 16 32 H 0.09 3.13 7.09 -2.39 -0.02 3.11 16 33 H 0.07 2.50 6.97 -2.39 -0.02 2.48 16 34 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 35 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -69.25 300.80 5.14 -64.11 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.37 Total: 9.01 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.55 Total: -21.05 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.34 Total: -72.06 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.33 Total: -25.81 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -69.25 5.14 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.812 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds