Wall clock time and date at job start Mon Mar 30 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35975 * 117.00346 * 2 1 4 4 C 1.38724 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.38114 * 119.99771 * 179.74594 * 4 3 2 6 6 C 1.50698 * 119.99763 * 180.29402 * 5 4 3 7 7 C 1.38715 * 119.99926 * 0.54895 * 5 4 3 8 8 O 1.35985 * 119.99950 * 179.72640 * 7 5 4 9 9 C 1.38674 * 120.00311 * 359.44663 * 7 5 4 10 10 C 1.50703 * 120.00360 * 180.25353 * 9 7 5 11 11 H 1.09003 * 109.46732 * 40.00127 * 10 9 7 12 12 N 1.46897 * 109.47001 * 160.00662 * 10 9 7 13 13 C 1.52999 * 109.47147 * 280.00405 * 10 9 7 14 14 C 1.50692 * 109.47305 * 174.99811 * 13 10 9 15 15 H 1.08000 * 119.99975 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00420 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00292 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99678 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47116 * 90.00451 * 18 16 14 20 20 H 1.48504 * 109.47484 * 209.99987 * 18 16 14 21 21 H 1.48498 * 109.47287 * 330.00220 * 18 16 14 22 22 C 1.38155 * 119.99761 * 0.27998 * 9 7 5 23 23 H 1.08997 * 109.46986 * 300.00005 * 1 2 3 24 24 H 1.09007 * 109.47215 * 59.99522 * 1 2 3 25 25 H 1.08994 * 109.47681 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00018 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46921 * 270.25140 * 6 5 4 28 28 H 1.08995 * 109.47585 * 30.25296 * 6 5 4 29 29 H 1.09003 * 109.47025 * 150.25991 * 6 5 4 30 30 H 0.96705 * 113.99622 * 269.72493 * 8 7 5 31 31 H 1.00892 * 111.00525 * 60.00197 * 12 10 9 32 32 H 1.00905 * 111.00050 * 183.95795 * 12 10 9 33 33 H 1.09002 * 109.47241 * 295.00017 * 13 10 9 34 34 H 1.09006 * 109.47260 * 54.99844 * 13 10 9 35 35 H 0.97002 * 119.99622 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.00091 * 180.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9180 3.6055 0.0048 6 6 1.0973 4.8694 0.0109 7 6 3.3033 3.6780 -0.0009 8 8 3.9207 4.8896 -0.0013 9 6 4.0585 2.5150 -0.0002 10 6 5.5635 2.5938 -0.0006 11 1 5.8852 3.3994 0.6594 12 7 6.1206 1.3200 0.4737 13 6 6.0594 2.8697 -1.4215 14 6 7.5528 3.0704 -1.4022 15 1 8.0941 3.0078 -0.4697 16 6 8.2281 3.3349 -2.5748 17 7 9.5315 3.5095 -2.5580 18 14 7.2918 3.4438 -4.1875 19 1 6.8562 4.8455 -4.4133 20 1 8.1740 3.0141 -5.3022 21 1 6.1009 2.5586 -4.1293 22 6 3.4313 1.2841 0.0002 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2124 2.3185 -0.0005 27 1 0.8952 5.1763 -1.0153 28 1 0.1552 4.6884 0.5282 29 1 1.6480 5.6578 0.5240 30 1 4.0993 5.2397 -0.8849 31 1 5.8365 0.5569 -0.1221 32 1 7.1260 1.3688 0.5440 33 1 5.8148 2.0228 -2.0626 34 1 5.5770 3.7682 -1.8066 35 1 10.0066 3.6952 -3.3831 36 1 4.0194 0.3782 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259991493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:02 Heat of formation + Delta-G solvation = -65.600924 kcal Electronic energy + Delta-G solvation = -18602.586498 eV Core-core repulsion = 15665.887246 eV Total energy + Delta-G solvation = -2936.699252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30264 -38.50008 -36.03403 -35.31661 -32.68921 -31.65380 -29.08502 -28.59933 -27.84427 -26.08543 -24.53988 -21.69930 -21.43384 -19.42818 -17.98020 -17.61217 -16.88253 -16.51511 -15.72863 -15.11912 -14.79953 -14.31101 -14.09524 -13.65054 -13.45192 -13.24477 -13.08408 -12.62252 -12.33291 -12.20796 -12.13776 -11.94483 -11.78953 -11.28795 -11.07407 -10.69777 -10.59201 -10.27189 -10.02165 -9.76089 -9.26899 -8.64877 -8.47179 -7.93801 -7.65953 -6.13949 -4.13511 1.51845 1.55526 3.22195 3.31267 3.33611 3.34148 3.81839 4.35882 4.61003 4.82324 4.94202 5.04304 5.06130 5.14082 5.20249 5.35461 5.44607 5.62626 5.71620 5.72671 5.79973 5.88637 6.11951 6.32168 6.38452 6.54211 6.56717 6.80639 6.86974 6.95962 7.24142 7.48187 7.64832 7.94168 8.05334 8.21579 8.41536 8.89263 9.47804 10.98776 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.006348 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.920219 B = 4409.841492 C = 4745.594680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.109 4.109 7 C 0.070 3.930 8 O -0.489 6.489 9 C -0.039 4.039 10 C 0.139 3.861 11 H 0.093 0.907 12 N -0.840 5.840 13 C -0.032 4.032 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.267 1.267 22 C -0.130 4.130 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.386 0.614 31 H 0.329 0.671 32 H 0.353 0.647 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.264 0.736 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 -2.332 3.046 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.072 3.928 4 C -0.228 4.228 5 C -0.078 4.078 6 C -0.166 4.166 7 C 0.025 3.975 8 O -0.299 6.299 9 C -0.040 4.040 10 C 0.028 3.972 11 H 0.111 0.889 12 N -0.369 5.369 13 C -0.071 4.071 14 C -0.561 4.561 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.149 4.149 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.241 0.759 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.757 -2.406 4.219 19.376 hybrid contribution -0.116 0.290 -2.473 2.492 sum -18.873 -2.116 1.746 19.071 Atomic orbital electron populations 1.22986 0.79032 1.03499 1.01096 1.86083 1.20846 1.27127 1.89114 1.18970 0.92279 0.83818 0.97729 1.20828 0.99381 0.91416 1.11183 1.19881 0.93136 0.95085 0.99740 1.20660 0.98771 0.95041 1.02108 1.17963 0.89168 0.84999 1.05384 1.84785 1.79704 1.32014 1.33356 1.20351 0.97154 0.91396 0.95113 1.20212 0.86633 0.92954 0.97413 0.88913 1.59251 1.17131 1.04565 1.55970 1.20236 0.97676 0.96483 0.92721 1.21021 0.90036 1.49256 0.95763 0.90668 1.24991 0.94683 0.94461 0.98967 1.69907 1.07254 1.48547 1.27886 0.86820 0.80217 0.78781 0.83689 1.20242 1.21319 1.19182 1.20146 0.90603 0.98580 1.05587 0.92909 0.92935 0.88563 0.85748 0.91448 0.91924 0.90639 0.75879 0.85956 0.83289 0.96584 0.97040 0.92616 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.46 10.50 -19.66 -0.21 -4.66 16 3 C 0.12 1.81 6.69 -39.24 -0.26 1.55 16 4 C -0.21 -2.92 8.69 -39.45 -0.34 -3.26 16 5 C -0.08 -1.14 5.89 -104.49 -0.62 -1.76 16 6 C -0.11 -1.25 9.79 36.00 0.35 -0.89 16 7 C 0.07 1.20 6.64 -39.24 -0.26 0.94 16 8 O -0.49 -8.10 11.69 -19.69 -0.23 -8.33 16 9 C -0.04 -0.72 5.10 -104.49 -0.53 -1.25 16 10 C 0.14 2.83 2.64 -68.87 -0.18 2.65 16 11 H 0.09 2.04 7.85 -51.93 -0.41 1.63 16 12 N -0.84 -15.95 8.67 -5.65 -0.05 -16.00 16 13 C -0.03 -0.74 3.67 -27.89 -0.10 -0.85 16 14 C -0.52 -14.17 9.10 -34.44 -0.31 -14.48 16 15 H 0.08 2.19 7.39 -52.49 -0.39 1.80 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 18 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.13 -2.25 9.19 -39.45 -0.36 -2.61 16 23 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.12 1.37 6.29 -52.49 -0.33 1.04 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 30 H 0.39 5.28 8.62 45.56 0.39 5.68 16 31 H 0.33 5.86 7.29 -39.30 -0.29 5.57 16 32 H 0.35 7.00 7.90 -39.29 -0.31 6.69 16 33 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 34 H 0.01 0.26 7.04 -51.93 -0.37 -0.11 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.14 2.30 6.25 -52.48 -0.33 1.97 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -31.26 297.07 -5.65 -36.91 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.02 Total: 14.01 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.73 Total: -16.80 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.72 Total: -42.16 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.44 Total: -12.99 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.26 -5.65 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.694 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds