Wall clock time and date at job start Mon Mar 30 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35975 * 117.00346 * 2 1 4 4 C 1.38724 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.38114 * 119.99771 * 179.74594 * 4 3 2 6 6 C 1.50698 * 119.99763 * 180.29402 * 5 4 3 7 7 C 1.38715 * 119.99926 * 0.54895 * 5 4 3 8 8 O 1.35985 * 119.99950 * 179.72640 * 7 5 4 9 9 C 1.38674 * 120.00311 * 359.44663 * 7 5 4 10 10 C 1.50703 * 120.00360 * 180.25353 * 9 7 5 11 11 H 1.09003 * 109.46732 * 40.00127 * 10 9 7 12 12 N 1.46897 * 109.47001 * 160.00662 * 10 9 7 13 13 C 1.52999 * 109.47147 * 280.00405 * 10 9 7 14 14 C 1.50692 * 109.47305 * 174.99811 * 13 10 9 15 15 H 1.08000 * 119.99975 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00420 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00292 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99678 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47116 * 90.00451 * 18 16 14 20 20 H 1.48504 * 109.47484 * 209.99987 * 18 16 14 21 21 H 1.48498 * 109.47287 * 330.00220 * 18 16 14 22 22 C 1.38155 * 119.99761 * 0.27998 * 9 7 5 23 23 H 1.08997 * 109.46986 * 300.00005 * 1 2 3 24 24 H 1.09007 * 109.47215 * 59.99522 * 1 2 3 25 25 H 1.08994 * 109.47681 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00018 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46921 * 270.25140 * 6 5 4 28 28 H 1.08995 * 109.47585 * 30.25296 * 6 5 4 29 29 H 1.09003 * 109.47025 * 150.25991 * 6 5 4 30 30 H 0.96705 * 113.99622 * 269.72493 * 8 7 5 31 31 H 1.00892 * 111.00525 * 60.00197 * 12 10 9 32 32 H 1.00905 * 111.00050 * 183.95795 * 12 10 9 33 33 H 1.09002 * 109.47241 * 295.00017 * 13 10 9 34 34 H 1.09006 * 109.47260 * 54.99844 * 13 10 9 35 35 H 0.97002 * 119.99622 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.00091 * 180.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9180 3.6055 0.0048 6 6 1.0973 4.8694 0.0109 7 6 3.3033 3.6780 -0.0009 8 8 3.9207 4.8896 -0.0013 9 6 4.0585 2.5150 -0.0002 10 6 5.5635 2.5938 -0.0006 11 1 5.8852 3.3994 0.6594 12 7 6.1206 1.3200 0.4737 13 6 6.0594 2.8697 -1.4215 14 6 7.5528 3.0704 -1.4022 15 1 8.0941 3.0078 -0.4697 16 6 8.2281 3.3349 -2.5748 17 7 9.5315 3.5095 -2.5580 18 14 7.2918 3.4438 -4.1875 19 1 6.8562 4.8455 -4.4133 20 1 8.1740 3.0141 -5.3022 21 1 6.1009 2.5586 -4.1293 22 6 3.4313 1.2841 0.0002 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2124 2.3185 -0.0005 27 1 0.8952 5.1763 -1.0153 28 1 0.1552 4.6884 0.5282 29 1 1.6480 5.6578 0.5240 30 1 4.0993 5.2397 -0.8849 31 1 5.8365 0.5569 -0.1221 32 1 7.1260 1.3688 0.5440 33 1 5.8148 2.0228 -2.0626 34 1 5.5770 3.7682 -1.8066 35 1 10.0066 3.6952 -3.3831 36 1 4.0194 0.3782 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259991493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:02 Heat of formation + Delta-G solvation = -89.544102 kcal Electronic energy + Delta-G solvation = -18603.624752 eV Core-core repulsion = 15665.887246 eV Total energy + Delta-G solvation = -2937.737506 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47370 -39.62267 -37.52679 -36.57599 -34.64950 -32.96428 -30.58512 -30.20263 -28.70169 -27.09007 -26.23248 -23.30212 -22.64636 -20.89377 -19.35829 -19.08749 -18.34187 -17.80836 -16.75482 -16.51144 -16.22027 -15.96861 -15.40927 -15.05914 -14.83772 -14.74883 -14.22613 -14.04134 -13.75448 -13.66151 -13.27015 -13.04254 -12.86494 -12.80221 -12.43035 -12.28416 -12.20444 -11.79612 -11.49945 -11.45223 -11.06861 -10.80843 -9.76294 -9.44346 -8.89644 -8.31581 -6.35868 0.30977 0.35312 1.31293 1.34294 1.44761 2.32060 2.38945 2.61477 3.02874 3.43713 3.64214 3.80349 3.93133 4.22305 4.35565 4.42203 4.43928 4.49385 4.56369 4.69316 4.76030 4.78980 4.83059 4.88920 5.04165 5.16196 5.30107 5.33146 5.44126 5.54994 5.65754 5.70145 6.20546 6.33170 6.45831 6.63839 6.70869 6.88920 7.28774 8.84349 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.006348 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.920219 B = 4409.841492 C = 4745.594680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.116 3.884 4 C -0.199 4.199 5 C -0.075 4.075 6 C -0.106 4.106 7 C 0.051 3.949 8 O -0.500 6.500 9 C -0.063 4.063 10 C 0.150 3.850 11 H 0.068 0.932 12 N -0.833 5.833 13 C -0.023 4.023 14 C -0.524 4.524 15 H 0.040 0.960 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.945 3.055 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.255 1.255 22 C -0.148 4.148 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.161 0.839 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.395 0.605 31 H 0.336 0.664 32 H 0.345 0.655 33 H 0.014 0.986 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.229 -2.378 2.222 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.218 4.218 5 C -0.076 4.076 6 C -0.163 4.163 7 C 0.006 3.994 8 O -0.311 6.311 9 C -0.064 4.064 10 C 0.039 3.961 11 H 0.086 0.914 12 N -0.362 5.362 13 C -0.062 4.062 14 C -0.562 4.562 15 H 0.058 0.942 16 C -0.186 4.186 17 N -0.586 5.586 18 Si 0.769 3.231 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.179 1.179 22 C -0.167 4.167 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.178 0.822 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.252 0.748 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.457 -2.460 3.404 22.846 hybrid contribution 0.959 0.247 -2.117 2.337 sum -21.498 -2.213 1.287 21.650 Atomic orbital electron populations 1.23367 0.76364 1.05602 1.02369 1.86070 1.23592 1.26452 1.88787 1.19009 0.91822 0.85065 0.96977 1.21206 1.01075 0.90347 1.09136 1.20245 0.92338 0.96897 0.98119 1.20726 0.99062 0.93074 1.03416 1.18182 0.90342 0.84512 1.06337 1.84758 1.79976 1.31981 1.34357 1.20165 0.95579 0.92764 0.97862 1.19910 0.88675 0.92504 0.95054 0.91384 1.59225 1.16420 1.04543 1.56046 1.20117 0.94840 0.96520 0.94700 1.21273 0.92194 1.48295 0.94438 0.94177 1.25883 0.95476 0.94254 1.02948 1.70055 1.09149 1.50340 1.29008 0.85739 0.79041 0.79556 0.78748 1.18852 1.21183 1.17884 1.20152 0.91957 0.97884 1.06743 0.91544 0.91567 0.86313 0.82195 0.89789 0.89514 0.91306 0.74819 0.85072 0.84202 0.96783 0.96212 0.92502 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.53 10.50 -93.27 -0.98 -9.50 16 3 C 0.12 3.36 6.69 22.49 0.15 3.51 16 4 C -0.20 -4.85 8.69 22.36 0.19 -4.65 16 5 C -0.08 -2.00 5.89 -19.78 -0.12 -2.12 16 6 C -0.11 -2.04 9.79 71.24 0.70 -1.34 16 7 C 0.05 1.70 6.64 22.49 0.15 1.85 16 8 O -0.50 -16.30 11.69 -93.38 -1.09 -17.40 16 9 C -0.06 -2.30 5.10 -19.78 -0.10 -2.40 16 10 C 0.15 6.27 2.64 44.17 0.12 6.39 16 11 H 0.07 3.13 7.85 -2.39 -0.02 3.11 16 12 N -0.83 -32.73 8.67 -171.80 -1.49 -34.22 16 13 C -0.02 -1.06 3.67 29.85 0.11 -0.95 16 14 C -0.52 -29.24 9.10 25.60 0.23 -29.01 16 15 H 0.04 2.46 7.39 -2.91 -0.02 2.44 16 16 C 0.01 0.68 5.47 84.65 0.46 1.15 16 17 N -0.95 -58.25 13.96 21.45 0.30 -57.96 16 18 Si 0.95 43.68 27.47 68.60 1.88 45.57 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 22 C -0.15 -5.03 9.19 22.36 0.21 -4.83 16 23 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 24 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 25 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.16 2.68 6.29 -2.91 -0.02 2.67 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.07 1.43 7.53 -2.39 -0.02 1.42 16 30 H 0.39 10.57 8.62 -74.05 -0.64 9.93 16 31 H 0.34 12.27 7.29 -89.70 -0.65 11.61 16 32 H 0.34 14.40 7.90 -89.69 -0.71 13.69 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 34 H 0.02 0.88 7.04 -2.38 -0.02 0.86 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.13 4.42 6.25 -2.91 -0.02 4.41 16 Total: -1.00 -68.59 297.07 0.91 -67.68 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.93 Total: 36.87 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.21 Total: -31.04 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.19 Total: -92.17 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -2.07 Total: -26.90 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -68.59 0.91 -67.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.865 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds