Wall clock time and date at job start Mon Mar 30 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35890 * 116.99940 * 2 1 4 4 C 1.38803 * 120.02915 * 0.02562 * 3 2 1 5 5 C 1.38154 * 120.05426 * 179.70351 * 4 3 2 6 6 C 1.50696 * 119.94582 * 180.27135 * 5 4 3 7 7 H 1.09003 * 109.46973 * 20.28150 * 6 5 4 8 8 N 1.46907 * 109.47088 * 140.27585 * 6 5 4 9 9 C 1.53000 * 109.47575 * 260.27686 * 6 5 4 10 10 C 1.50696 * 109.47437 * 175.00020 * 9 6 5 11 11 H 1.08003 * 119.99907 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99959 * 180.02562 * 10 9 6 13 13 N 1.31508 * 119.99943 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47487 * 89.99533 * 14 12 10 16 16 H 1.48495 * 109.47091 * 209.99825 * 14 12 10 17 17 H 1.48507 * 109.47047 * 329.99888 * 14 12 10 18 18 C 1.38199 * 120.10963 * 0.55584 * 5 4 3 19 19 C 1.38754 * 120.05262 * 359.44167 * 18 5 4 20 20 O 1.35901 * 120.02719 * 180.26083 * 19 18 5 21 21 C 1.38609 * 120.02917 * 179.97438 * 3 2 1 22 22 C 1.50698 * 120.05302 * 0.04272 * 21 3 2 23 23 H 1.09005 * 109.47138 * 60.00211 * 1 2 3 24 24 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47524 * 300.00251 * 1 2 3 26 26 H 1.07998 * 119.97202 * 359.97438 * 4 3 2 27 27 H 1.00896 * 111.00257 * 296.05321 * 8 6 5 28 28 H 1.00902 * 110.99270 * 60.00317 * 8 6 5 29 29 H 1.09005 * 109.46980 * 295.00437 * 9 6 5 30 30 H 1.09006 * 109.46809 * 54.99944 * 9 6 5 31 31 H 0.97005 * 119.99554 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.97624 * 179.72623 * 18 5 4 33 33 H 0.96697 * 114.00302 * 90.00265 * 20 19 18 34 34 H 1.08995 * 109.47369 * 269.97661 * 22 21 3 35 35 H 1.09000 * 109.47523 * 29.97578 * 22 21 3 36 36 H 1.09002 * 109.47437 * 149.97430 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0067 6 6 1.0947 4.8692 0.0135 7 1 0.0887 4.6456 0.3688 8 7 1.7203 5.8563 0.9036 9 6 1.0200 5.4369 -1.4053 10 6 0.0982 6.6290 -1.4216 11 1 -0.3856 6.9499 -0.5109 12 6 -0.1274 7.3099 -2.5990 13 7 0.4621 6.9195 -3.7078 14 14 -1.2695 8.7880 -2.6189 15 1 -0.4883 10.0210 -2.3453 16 1 -1.9152 8.8967 -3.9517 17 1 -2.3129 8.6215 -1.5754 18 6 3.2971 3.6821 0.0008 19 6 4.0567 2.5210 0.0003 20 8 5.4136 2.5960 -0.0002 21 6 3.4301 1.2841 0.0005 22 6 4.2527 0.0214 0.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2121 2.3188 0.0005 27 1 1.7231 5.5314 1.8588 28 1 2.6545 6.0804 0.5951 29 1 2.0155 5.7429 -1.7271 30 1 0.6380 4.6730 -2.0827 31 1 0.3030 7.3984 -4.5362 32 1 3.7847 4.6458 0.0012 33 1 5.8067 2.6175 0.8831 34 1 4.4510 -0.2834 1.0277 35 1 3.7054 -0.7687 -0.5139 36 1 5.1967 0.2029 -0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260187391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:52 Heat of formation + Delta-G solvation = -67.129930 kcal Electronic energy + Delta-G solvation = -18386.174588 eV Core-core repulsion = 15449.409034 eV Total energy + Delta-G solvation = -2936.765554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37267 -38.37525 -36.94919 -34.60086 -32.59441 -31.53539 -29.28262 -28.30477 -27.56736 -26.43431 -23.80353 -22.14957 -21.53235 -19.95675 -17.96689 -16.80103 -16.66276 -16.14518 -15.72605 -15.48249 -14.98901 -14.68341 -14.34507 -13.99796 -13.54302 -13.16040 -12.84029 -12.38585 -12.32480 -12.01742 -11.87176 -11.64074 -11.21244 -11.15468 -10.95588 -10.82628 -10.48399 -10.40216 -10.20644 -9.49760 -9.09145 -8.31418 -8.24225 -8.06604 -7.83994 -5.90990 -3.90411 1.39890 1.59508 3.26008 3.38689 3.44370 3.48218 3.78602 4.39278 4.54405 4.91575 5.06318 5.11533 5.18596 5.29367 5.33459 5.42147 5.49087 5.56667 5.68495 5.71194 5.79481 5.88812 6.16928 6.31119 6.44417 6.57512 6.66073 6.78742 6.90127 7.43258 7.53130 7.70246 7.74870 7.96256 8.08533 8.15595 8.51772 9.15729 9.71600 11.20710 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.005478 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.136143 B = 5110.522626 C = 5620.065220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.139 3.861 4 C -0.206 4.206 5 C -0.048 4.048 6 C 0.131 3.869 7 H 0.079 0.921 8 N -0.820 5.820 9 C 0.037 3.963 10 C -0.495 4.495 11 H 0.063 0.937 12 C 0.051 3.949 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.275 1.275 18 C -0.175 4.175 19 C 0.139 3.861 20 O -0.493 6.493 21 C -0.161 4.161 22 C -0.096 4.096 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.322 0.678 28 H 0.335 0.665 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.386 0.614 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -13.181 10.299 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.094 3.906 4 C -0.225 4.225 5 C -0.050 4.050 6 C 0.019 3.981 7 H 0.097 0.903 8 N -0.347 5.347 9 C 0.000 4.000 10 C -0.534 4.534 11 H 0.081 0.919 12 C -0.149 4.149 13 N -0.542 5.542 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.200 1.200 18 C -0.194 4.194 19 C 0.095 3.905 20 O -0.302 6.302 21 C -0.162 4.162 22 C -0.152 4.152 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.149 0.851 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.226 -12.823 9.271 16.377 hybrid contribution -0.057 0.238 0.440 0.504 sum 4.169 -12.584 9.711 16.433 Atomic orbital electron populations 1.23061 0.78378 1.03575 1.01841 1.85995 1.21322 1.26917 1.88836 1.18571 0.91216 0.84153 0.96700 1.21174 1.00189 0.91568 1.09587 1.21069 0.94069 0.97018 0.92871 1.20862 0.94816 0.84438 0.97968 0.90334 1.58870 1.26142 1.45517 1.04131 1.19137 0.97790 0.95839 0.87228 1.21143 1.25979 1.11891 0.94364 0.91926 1.25030 0.96465 0.97666 0.95760 1.69978 1.44003 1.40817 0.99396 0.86570 0.80992 0.83287 0.76944 1.20819 1.21570 1.19978 1.21107 0.93665 0.98057 1.06538 1.17890 0.82518 0.90936 0.99186 1.84798 1.16248 1.96119 1.33079 1.19300 0.91009 0.95708 1.10177 1.20413 0.99109 0.94151 1.01576 0.92265 0.88475 0.92632 0.85243 0.86746 0.85130 0.96373 0.96209 0.93206 0.85487 0.75847 0.92181 0.91476 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.43 9.54 -19.40 -0.19 -4.61 16 3 C 0.14 2.18 6.66 -39.24 -0.26 1.91 16 4 C -0.21 -3.40 8.66 -39.40 -0.34 -3.74 16 5 C -0.05 -0.85 4.94 -104.67 -0.52 -1.37 16 6 C 0.13 2.63 2.93 -68.86 -0.20 2.43 16 7 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 8 N -0.82 -14.95 8.77 -5.65 -0.05 -15.00 16 9 C 0.04 0.96 4.60 -27.88 -0.13 0.83 16 10 C -0.50 -13.98 8.84 -34.44 -0.30 -14.29 16 11 H 0.06 1.76 7.74 -52.48 -0.41 1.35 16 12 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 13 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 14 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.17 -2.94 9.23 -39.40 -0.36 -3.31 16 19 C 0.14 2.16 6.67 -39.24 -0.26 1.89 16 20 O -0.49 -6.50 12.55 -19.43 -0.24 -6.75 16 21 C -0.16 -2.44 5.91 -104.33 -0.62 -3.06 16 22 C -0.10 -1.19 9.57 36.00 0.34 -0.85 16 23 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 26 H 0.13 1.96 6.27 -52.49 -0.33 1.63 16 27 H 0.32 4.89 9.06 -39.29 -0.36 4.53 16 28 H 0.33 5.90 7.34 -39.29 -0.29 5.61 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.08 6.66 -52.49 -0.35 1.73 16 33 H 0.39 3.05 9.06 45.56 0.41 3.46 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 36 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -33.14 303.67 -6.08 -39.22 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.14 Total: 9.13 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.76 Total: -16.90 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.69 Total: -41.78 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.43 Total: -11.36 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.14 -6.08 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.912 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds