Wall clock time and date at job start Mon Mar 30 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35890 * 116.99940 * 2 1 4 4 C 1.38803 * 120.02915 * 0.02562 * 3 2 1 5 5 C 1.38154 * 120.05426 * 179.70351 * 4 3 2 6 6 C 1.50696 * 119.94582 * 180.27135 * 5 4 3 7 7 H 1.09003 * 109.46973 * 20.28150 * 6 5 4 8 8 N 1.46907 * 109.47088 * 140.27585 * 6 5 4 9 9 C 1.53000 * 109.47575 * 260.27686 * 6 5 4 10 10 C 1.50696 * 109.47437 * 175.00020 * 9 6 5 11 11 H 1.08003 * 119.99907 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99959 * 180.02562 * 10 9 6 13 13 N 1.31508 * 119.99943 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47487 * 89.99533 * 14 12 10 16 16 H 1.48495 * 109.47091 * 209.99825 * 14 12 10 17 17 H 1.48507 * 109.47047 * 329.99888 * 14 12 10 18 18 C 1.38199 * 120.10963 * 0.55584 * 5 4 3 19 19 C 1.38754 * 120.05262 * 359.44167 * 18 5 4 20 20 O 1.35901 * 120.02719 * 180.26083 * 19 18 5 21 21 C 1.38609 * 120.02917 * 179.97438 * 3 2 1 22 22 C 1.50698 * 120.05302 * 0.04272 * 21 3 2 23 23 H 1.09005 * 109.47138 * 60.00211 * 1 2 3 24 24 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47524 * 300.00251 * 1 2 3 26 26 H 1.07998 * 119.97202 * 359.97438 * 4 3 2 27 27 H 1.00896 * 111.00257 * 296.05321 * 8 6 5 28 28 H 1.00902 * 110.99270 * 60.00317 * 8 6 5 29 29 H 1.09005 * 109.46980 * 295.00437 * 9 6 5 30 30 H 1.09006 * 109.46809 * 54.99944 * 9 6 5 31 31 H 0.97005 * 119.99554 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.97624 * 179.72623 * 18 5 4 33 33 H 0.96697 * 114.00302 * 90.00265 * 20 19 18 34 34 H 1.08995 * 109.47369 * 269.97661 * 22 21 3 35 35 H 1.09000 * 109.47523 * 29.97578 * 22 21 3 36 36 H 1.09002 * 109.47437 * 149.97430 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0067 6 6 1.0947 4.8692 0.0135 7 1 0.0887 4.6456 0.3688 8 7 1.7203 5.8563 0.9036 9 6 1.0200 5.4369 -1.4053 10 6 0.0982 6.6290 -1.4216 11 1 -0.3856 6.9499 -0.5109 12 6 -0.1274 7.3099 -2.5990 13 7 0.4621 6.9195 -3.7078 14 14 -1.2695 8.7880 -2.6189 15 1 -0.4883 10.0210 -2.3453 16 1 -1.9152 8.8967 -3.9517 17 1 -2.3129 8.6215 -1.5754 18 6 3.2971 3.6821 0.0008 19 6 4.0567 2.5210 0.0003 20 8 5.4136 2.5960 -0.0002 21 6 3.4301 1.2841 0.0005 22 6 4.2527 0.0214 0.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2121 2.3188 0.0005 27 1 1.7231 5.5314 1.8588 28 1 2.6545 6.0804 0.5951 29 1 2.0155 5.7429 -1.7271 30 1 0.6380 4.6730 -2.0827 31 1 0.3030 7.3984 -4.5362 32 1 3.7847 4.6458 0.0012 33 1 5.8067 2.6175 0.8831 34 1 4.4510 -0.2834 1.0277 35 1 3.7054 -0.7687 -0.5139 36 1 5.1967 0.2029 -0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:52 Heat of formation + Delta-G solvation = -92.209499 kcal Electronic energy + Delta-G solvation = -18387.262120 eV Core-core repulsion = 15449.409034 eV Total energy + Delta-G solvation = -2937.853086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55133 -39.46638 -38.31688 -35.98007 -34.57385 -32.84889 -30.61461 -30.08137 -28.55856 -27.74463 -25.60000 -23.49000 -22.88554 -21.40631 -19.25125 -18.37780 -17.82891 -17.80565 -16.85276 -16.75480 -16.54955 -16.22394 -15.78864 -15.25634 -14.84464 -14.50984 -14.14195 -14.13364 -13.49271 -13.24889 -13.23121 -12.93542 -12.81937 -12.68232 -12.49019 -12.26144 -12.15379 -12.03088 -11.59935 -11.27998 -11.20483 -10.53231 -9.55522 -9.47924 -9.09927 -8.12911 -6.20213 0.17679 0.34253 1.42396 1.44056 1.54939 2.24096 2.45246 2.56561 3.20144 3.30465 3.69299 3.88063 3.93663 4.03432 4.24258 4.35750 4.37072 4.39397 4.61819 4.70313 4.73777 4.75941 4.81649 4.92405 5.20565 5.26402 5.38063 5.43757 5.45381 5.62500 5.69758 5.85157 6.26109 6.34150 6.46138 6.79184 6.82249 6.94288 7.46848 8.99102 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.005478 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.136143 B = 5110.522626 C = 5620.065220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.321 6.321 3 C 0.137 3.863 4 C -0.215 4.215 5 C -0.064 4.064 6 C 0.147 3.853 7 H 0.076 0.924 8 N -0.825 5.825 9 C 0.046 3.954 10 C -0.507 4.507 11 H 0.064 0.936 12 C -0.007 4.007 13 N -0.941 5.941 14 Si 0.964 3.036 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.188 4.188 19 C 0.144 3.856 20 O -0.497 6.497 21 C -0.167 4.167 22 C -0.091 4.091 23 H 0.052 0.948 24 H 0.128 0.872 25 H 0.064 0.936 26 H 0.137 0.863 27 H 0.342 0.658 28 H 0.338 0.662 29 H -0.011 1.011 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.125 0.875 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -13.883 11.574 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.235 6.235 3 C 0.091 3.909 4 C -0.235 4.235 5 C -0.067 4.067 6 C 0.035 3.965 7 H 0.094 0.906 8 N -0.354 5.354 9 C 0.008 3.992 10 C -0.545 4.545 11 H 0.082 0.918 12 C -0.203 4.203 13 N -0.583 5.583 14 Si 0.789 3.211 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.207 4.207 19 C 0.099 3.901 20 O -0.310 6.310 21 C -0.168 4.168 22 C -0.147 4.147 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.270 0.730 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.165 -13.537 10.593 17.687 hybrid contribution 0.017 0.365 0.064 0.371 sum 4.183 -13.172 10.657 17.452 Atomic orbital electron populations 1.23351 0.76609 1.05718 1.01957 1.85997 1.23124 1.25885 1.88477 1.18671 0.91619 0.84448 0.96154 1.21274 1.00791 0.91562 1.09832 1.20788 0.94359 0.96386 0.95131 1.20375 0.95628 0.85680 0.94849 0.90561 1.58751 1.26318 1.45287 1.05091 1.18927 0.95330 0.94568 0.90330 1.21492 1.26075 1.12531 0.94378 0.91825 1.25946 0.98150 1.00825 0.95378 1.70120 1.45669 1.42390 1.00074 0.85459 0.79002 0.79358 0.77238 1.20206 1.21187 1.18742 1.21163 0.93489 0.98708 1.07339 1.17866 0.83356 0.90555 0.98276 1.84736 1.14934 1.95991 1.35323 1.19684 0.91310 0.96733 1.09084 1.20442 0.98677 0.92651 1.02976 0.92944 0.85372 0.91727 0.84529 0.84503 0.84801 0.99301 0.99283 0.93153 0.85740 0.72962 0.90071 0.91519 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.32 -8.43 9.54 -92.31 -0.88 -9.31 16 3 C 0.14 4.14 6.66 22.49 0.15 4.29 16 4 C -0.22 -7.07 8.66 22.38 0.19 -6.88 16 5 C -0.06 -2.31 4.94 -19.89 -0.10 -2.41 16 6 C 0.15 6.00 2.93 44.17 0.13 6.13 16 7 H 0.08 3.11 8.00 -2.39 -0.02 3.09 16 8 N -0.83 -30.02 8.77 -171.79 -1.51 -31.53 16 9 C 0.05 2.44 4.60 29.85 0.14 2.58 16 10 C -0.51 -29.05 8.84 25.60 0.23 -28.83 16 11 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 12 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 13 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 14 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.19 -6.33 9.23 22.38 0.21 -6.12 16 19 C 0.14 4.31 6.67 22.49 0.15 4.46 16 20 O -0.50 -12.18 12.55 -92.43 -1.16 -13.34 16 21 C -0.17 -4.82 5.91 -19.68 -0.12 -4.94 16 22 C -0.09 -2.04 9.57 71.24 0.68 -1.36 16 23 H 0.05 1.08 7.66 -2.38 -0.02 1.07 16 24 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 26 H 0.14 4.13 6.27 -2.91 -0.02 4.11 16 27 H 0.34 10.10 9.06 -89.70 -0.81 9.28 16 28 H 0.34 11.98 7.34 -89.69 -0.66 11.33 16 29 H -0.01 -0.67 8.14 -2.38 -0.02 -0.68 16 30 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 31 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 32 H 0.12 4.14 6.66 -2.91 -0.02 4.12 16 33 H 0.41 5.48 9.06 -74.06 -0.67 4.81 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.51 7.53 -2.39 -0.02 1.49 16 36 H 0.07 1.56 7.53 -2.39 -0.02 1.55 16 Total: -1.00 -71.48 303.67 0.98 -70.51 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -1.02 Total: 26.04 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.23 Total: -31.55 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -1.22 Total: -89.96 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -2.04 Total: -22.64 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.48 0.98 -70.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.703 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds