Wall clock time and date at job start Mon Mar 30 2020 07:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47029 * 2 1 4 4 C 1.35893 * 117.00220 * 180.02562 * 3 2 1 5 5 C 1.38793 * 120.02550 * 0.02562 * 4 3 2 6 6 C 1.38155 * 120.05260 * 179.97438 * 5 4 3 7 7 C 1.38197 * 120.10871 * 0.02562 * 6 5 4 8 8 C 1.38746 * 120.05780 * 359.72167 * 7 6 5 9 9 O 1.35896 * 120.03471 * 180.29883 * 8 7 6 10 10 C 1.42899 * 116.99667 * 0.24798 * 9 8 7 11 11 C 1.38617 * 120.02647 * 180.02562 * 4 3 2 12 12 C 1.50695 * 120.05425 * 0.02562 * 11 4 3 13 13 H 1.09000 * 109.47195 * 15.00076 * 12 11 4 14 14 N 1.46894 * 109.46988 * 135.00048 * 12 11 4 15 15 C 1.50697 * 109.47169 * 255.00173 * 12 11 4 16 16 H 1.08004 * 120.00167 * 355.12329 * 15 12 11 17 17 C 1.37877 * 120.00387 * 175.13326 * 15 12 11 18 18 N 1.31514 * 119.99771 * 352.63340 * 17 15 12 19 19 Si 1.86797 * 120.00479 * 172.91507 * 17 15 12 20 20 H 1.48508 * 109.47047 * 264.90750 * 19 17 15 21 21 H 1.48508 * 109.47120 * 24.90104 * 19 17 15 22 22 H 1.48490 * 109.47461 * 144.90570 * 19 17 15 23 23 H 1.09001 * 109.47155 * 299.99190 * 1 2 3 24 24 H 1.09004 * 109.47477 * 59.99903 * 1 2 3 25 25 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47155 * 240.00810 * 2 1 3 27 27 H 1.08994 * 109.47349 * 119.99903 * 2 1 3 28 28 H 1.07999 * 119.97260 * 359.96143 * 5 4 3 29 29 H 1.08002 * 119.94865 * 180.02562 * 6 5 4 30 30 H 1.08007 * 119.96951 * 179.97438 * 7 6 5 31 31 H 1.09006 * 109.46918 * 60.00048 * 10 9 8 32 32 H 1.09002 * 109.47263 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.47647 * 300.00616 * 10 9 8 34 34 H 1.00906 * 111.00268 * 68.06046 * 14 12 11 35 35 H 1.00903 * 111.00176 * 192.00816 * 14 12 11 36 36 H 0.97000 * 120.00483 * 180.27699 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1995 0.4252 -0.0016 6 6 5.5692 0.6056 -0.0027 7 6 6.1004 1.8815 -0.0022 8 6 5.2589 2.9846 -0.0064 9 8 5.7817 4.2389 -0.0121 10 6 7.2065 4.3478 -0.0188 11 6 3.8838 2.8062 0.0000 12 6 2.9675 4.0025 0.0017 13 1 1.9587 3.6871 0.2683 14 7 3.4481 4.9860 0.9813 15 6 2.9527 4.6259 -1.3702 16 1 3.6062 4.2476 -2.1424 17 6 2.1050 5.6794 -1.6397 18 7 1.2089 6.0465 -0.7498 19 14 2.2240 6.5803 -3.2717 20 1 3.0861 7.7792 -3.1137 21 1 2.8136 5.6780 -4.2934 22 1 0.8674 6.9999 -3.7057 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.7867 -0.5728 -0.0014 29 1 6.2260 -0.2517 -0.0039 30 1 7.1715 2.0199 -0.0026 31 1 7.6039 3.8608 -0.9094 32 1 7.4906 5.4001 -0.0233 33 1 7.6121 3.8654 0.8705 34 1 4.3241 5.3912 0.6870 35 1 2.7557 5.7014 1.1450 36 1 0.6098 6.7851 -0.9409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:13 Heat of formation + Delta-G solvation = -74.317736 kcal Electronic energy + Delta-G solvation = -19075.110639 eV Core-core repulsion = 16138.033398 eV Total energy + Delta-G solvation = -2937.077241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36082 -39.80948 -37.29880 -36.41409 -33.56624 -32.53655 -30.73988 -29.98483 -28.20308 -27.57961 -24.84791 -24.22408 -22.31471 -21.68572 -19.35160 -18.60342 -17.52517 -17.13209 -16.92103 -16.85961 -16.36103 -16.17000 -15.54909 -15.23026 -14.81091 -14.18996 -14.08817 -13.87230 -13.34802 -13.20712 -13.11778 -12.89955 -12.84457 -12.74912 -12.60120 -12.16808 -12.03778 -11.88423 -11.86272 -11.36505 -11.02970 -10.58584 -9.21589 -8.92969 -8.89224 -8.05059 -6.25788 0.63921 0.66496 1.34846 1.35157 1.46611 2.22999 2.39220 2.90116 2.99499 3.13322 3.98326 4.10711 4.16960 4.21940 4.28494 4.36212 4.42094 4.51174 4.53457 4.66664 4.79594 4.80551 4.93205 4.96754 5.15852 5.23797 5.33767 5.45735 5.59122 5.69058 5.78904 5.90857 6.20788 6.70655 6.74950 6.77556 6.97546 7.27569 7.45921 8.91329 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.010251 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.097852 B = 2730.887936 C = 4040.749935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.138 3.862 5 C -0.248 4.248 6 C -0.056 4.056 7 C -0.251 4.251 8 C 0.158 3.842 9 O -0.321 6.321 10 C 0.018 3.982 11 C -0.147 4.147 12 C 0.265 3.735 13 H 0.009 0.991 14 N -0.839 5.839 15 C -0.536 4.536 16 H 0.035 0.965 17 C 0.018 3.982 18 N -0.918 5.918 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.275 1.275 22 H -0.281 1.281 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.330 0.670 35 H 0.326 0.674 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 -11.670 1.265 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.092 3.908 5 C -0.266 4.266 6 C -0.074 4.074 7 C -0.269 4.269 8 C 0.112 3.888 9 O -0.234 6.234 10 C -0.076 4.076 11 C -0.148 4.148 12 C 0.155 3.845 13 H 0.027 0.973 14 N -0.368 5.368 15 C -0.576 4.576 16 H 0.053 0.947 17 C -0.182 4.182 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.207 1.207 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.170 0.830 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.997 -11.841 1.813 14.403 hybrid contribution -0.249 1.275 -1.617 2.074 sum 7.747 -10.566 0.195 13.104 Atomic orbital electron populations 1.21798 0.92157 1.04093 1.02455 1.23057 0.96612 0.81036 1.02215 1.86185 1.19322 1.31080 1.88445 1.18711 0.82914 0.93188 0.96025 1.21312 0.94601 0.97556 1.13167 1.20986 0.94105 0.97033 0.95253 1.21382 1.00315 0.92154 1.13069 1.18621 0.91160 0.84610 0.94436 1.86111 1.24264 1.24964 1.88034 1.23302 0.77739 1.04639 1.01969 1.19090 0.92924 0.94159 1.08673 1.17300 0.90893 0.87054 0.89216 0.97271 1.59496 1.07910 1.20529 1.48852 1.21894 1.21225 1.16037 0.98462 0.94677 1.25727 0.94140 0.98045 1.00242 1.70022 1.20174 1.28793 1.36854 0.85609 0.77414 0.78828 0.80116 1.19790 1.20013 1.20654 0.92677 0.93100 0.87017 0.91054 0.90633 0.83143 0.81925 0.82959 0.92015 0.87249 0.91390 0.85629 0.86292 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.28 71.98 0.74 -3.08 16 2 C 0.05 1.33 5.46 71.98 0.39 1.73 16 3 O -0.34 -14.67 8.97 -92.34 -0.83 -15.49 16 4 C 0.14 5.98 6.66 22.49 0.15 6.13 16 5 C -0.25 -8.14 9.04 22.38 0.20 -7.93 16 6 C -0.06 -1.61 10.04 22.24 0.22 -1.38 16 7 C -0.25 -8.09 9.04 22.38 0.20 -7.89 16 8 C 0.16 6.66 6.46 22.49 0.15 6.80 16 9 O -0.32 -13.06 7.33 -92.39 -0.68 -13.74 16 10 C 0.02 0.48 9.81 113.37 1.11 1.60 16 11 C -0.15 -7.21 4.91 -19.67 -0.10 -7.31 16 12 C 0.27 15.12 2.58 43.42 0.11 15.23 16 13 H 0.01 0.60 7.12 -2.39 -0.02 0.58 16 14 N -0.84 -45.25 8.93 -174.97 -1.56 -46.81 16 15 C -0.54 -32.09 8.40 25.60 0.22 -31.87 16 16 H 0.03 2.15 7.75 -2.91 -0.02 2.13 16 17 C 0.02 1.04 5.37 84.65 0.45 1.49 16 18 N -0.92 -55.41 12.27 21.45 0.26 -55.15 16 19 Si 0.95 46.09 29.54 68.60 2.03 48.12 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.83 7.66 -2.39 -0.02 1.82 16 27 H 0.08 1.87 7.66 -2.39 -0.02 1.85 16 28 H 0.15 3.82 6.29 -2.91 -0.02 3.80 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 3.75 6.29 -2.91 -0.02 3.73 16 31 H 0.06 1.45 7.67 -2.38 -0.02 1.43 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 1.52 7.65 -2.39 -0.02 1.50 16 34 H 0.33 17.12 6.23 -89.69 -0.56 16.56 16 35 H 0.33 18.52 7.98 -89.69 -0.72 17.81 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -73.47 297.66 2.90 -70.57 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.18 Total: 39.00 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.85 Total: -26.49 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -1.30 Total: -101.96 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.51 Total: -29.23 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.47 2.90 -70.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.747 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds